Tag: electron microscopy

The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data contained in the archive include atomic ...

Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps ...

The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises a ...

NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience communit ...

DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), founded by Prof. Norbert Perrimon in 2003, and the Transgenic RNAi Project (TRiP), founded by Prof. Perrimon in 2008. DRSC-FGR has been previously kno ...

This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular ...

WALTZ-DB 2.0 is a database for characterizing short peptides for their amyloid fiber-forming capacities. The majority of the data comes from electron microscopy, FTIR and Thioflavin-T experiments done by the Switch lab. Apart from that class of data ...

EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. The purpose of EMPIAR is to provide easy access to s ...

Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataResource project provides a unified portal for deposition, retriev ...

The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes.

Anatomy ontology for planaria and terms specific to the developmental stages of the planarian Schmidtea mediterranea. As the regenerative flatworm Schmidtea mediterranea gains popularity as a developmental research organism the need for standard nome ...

webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, link-sharing to specific locations in the data, and ...

The Biological Structure Model Archive (BSM-Arc) aims to collect raw data obtained via in silico methods related to structural biology, such as computationally modeled 3D structures and molecular dynamics trajectories. Since BSM-Arc does not enforce ...

Covalent Inhibitor DataBase

The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM) is a database of barcoded Chytridiomyceta and Blastocladiomycota cultures.

The CryoEM Ontology for describing objects and workflows in Single Particle Analysis by Cryo Electron Microscopy.

Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is applied to most structures present in the electron ...

The Open Microscopy Environment Ontology (OME-OWL) is a light microscopy imaging ontology that has been developed through translation of the OME data model. The aim of this ontology is to support multi-modal imaging technologies and integrate life-sc ...

CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; prepare and separate material for further analysis, such as sample ionisation, chromatography, and ...

The Recommended Metadata for Biological Images (REMBI) are a set of guidelines developed by the bioimaging community as a framework for discussing different aspects of useful sharing of imaging data. Its goal is to reach community-wide consensus on t ...

CERES is a cryo-EM re-refinement system for continuous improvement of deposited models.

Repository of workflows for image processing in cryo-electron microscopy using Scipion.

Scalable volumetric 3D and 4D database for the cloud.

A repository of cleaned PDB-derived RNA 3D structures.

The Hustedt Diatom Collection Database stores information on a large collection of diatom specimens that began with the private collection of Friedrich Hustedt which, in 1968 was housed at the Institut für Meeresforschung in Bremerhaven (now the Alfr ...

ConoMode is a database dedicated to collection of the complex 3D structures of conopeptides binding with their target proteins.

Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit. Client for the HASTE Storage Engine. Smart middleware for working with a variety of storage media with Scientific Computing datasets. ...