webKnossos
webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, link-sharing to specific locations in the data, and collaborative annotation features (volume labelling, line-segment annotation and more). Users may browse and view publicly-available data, while registered users can search, download and analyze database content.
Description
More detailed information about this field from each metasource.
webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, link-sharing to specific locations in the data, and collaborative annotation features (volume labelling, line-segment annotation and more). Users may browse and view publicly-available data, while registered users can search, download and analyze database content.
metasource: Fairsharing.orgversion: None
Webpage:
https://webknossos.orgWebpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
webKnossos: efficient online 3D data annotation for connectomics
PMID: 28604722
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
webKnossos: efficient online 3D data annotation for connectomics
PMID: 28604722
metasource: Fairsharing.org
version: None
-
webKnossos: efficient online 3D data annotation for connectomics
PubMed citations: 29.
29 articles citing: webKnossos: efficient online 3D data annotation for connectomics
Sample Preparation and Warping Accuracy for Correlative Multimodal Imaging in the Mouse Olfactory Bulb Using 2-Photon, Synchrotron X-Ray and Volume Electron Microscopy. PMID:35756997
Cross-modality synthesis of EM time series and live fluorescence imaging. PMID:35666127
Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability. PMID:35651719
Neuropathic pain caused by miswiring and abnormal end organ targeting. PMID:35614217
Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron microtomography and volume electron microscopy. PMID:35614048
Deep learning -- promises for 3D nuclear imaging: a guide for biologists. PMID:35420128
The connectome from the cerebral cortex to the viscera using viral transneuronal tracers. PMID:34956443
Aligned Organization of Synapses and Mitochondria in Auditory Hair Cells. PMID:34837647
Advanced Technologies for Local Neural Circuits in the Cerebral Cortex. PMID:34803616
A specialized spinal circuit for command amplification and directionality during escape behavior. PMID:34663699
Integration of signals from different cortical areas in higher order thalamic neurons. PMID:34282018
Methods for analyzing neuronal structure and activity in Caenorhabditis elegans. PMID:34151952
Segmentor: a tool for manual refinement of 3D microscopy annotations. PMID:34022787
Cellular connectomes as arbiters of local circuit models in the cerebral cortex. PMID:33986261
Cytoarchitecture and innervation of the mouse cochlear amplifier revealed by large-scale volume electron microscopy. PMID:33719053
webTDat: A Web-Based, Real-Time, 3D Visualization Framework for Mesoscopic Whole-Brain Images. PMID:33519408
Statistical Laws of Protein Motion in Neuronal Dendritic Trees. PMID:33207192
Massive Data Management and Sharing Module for Connectome Reconstruction. PMID:32455914
Cell-type specific innervation of cortical pyramidal cells at their apical dendrites. PMID:32108571
UNI-EM: An Environment for Deep Neural Network-Based Automated Segmentation of Neuronal Electron Microscopic Images. PMID:31857624
A Pipeline for Volume Electron Microscopy of the Caenorhabditis elegans Nervous System. PMID:30524248
Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset. PMID:30485333
NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction. PMID:30483068
Fully-Automatic Synapse Prediction and Validation on a Large Data Set. PMID:30420797
Methods for Mapping Neuronal Activity to Synaptic Connectivity: Lessons From Larval Zebrafish. PMID:30410437
VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks. PMID:30386216
FluoEM, virtual labeling of axons in three-dimensional electron microscopy data for long-range connectomics. PMID:30106377
Architecture of a mammalian glomerular domain revealed by novel volume electroporation using nanoengineered microelectrodes. PMID:29330458
SynEM, automated synapse detection for connectomics. PMID:28708060
Tags:
Tags
More detailed information about this field from each metasource.
electron microscopy
metasource: Fairsharing.org
version: None
light microscopy
metasource: Fairsharing.org
version: None
Tags
More detailed information about this field from each metasource.
electron microscopy
metasource: Fairsharing.orgversion: None
light microscopy
metasource: Fairsharing.orgversion: None
electron microscopy light microscopy
Need help integrating and/or managing biomedical data?