Other names: Cryo Electron Microscopy, CRYOEM, cryoem_ontology
The CryoEM Ontology for describing objects and workflows in Single Particle Analysis by Cryo Electron Microscopy.
electron microscopy
Repository of workflows for image processing in cryo-electron microscopy using Scipion.
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a publ ...
3D cryo-electron microscopy maps, models and metadata
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. Th ...
The Electron Microscopy Exchange (EMX) format is a standard for metadata exchange in 3D electron microscopy.
Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataResource project ...
The Open Microscopy Environment Ontology (OME-OWL) is a light microscopy imaging ontology that has been developed through translation of the OME data model. The aim of this ontology is to support mult ...
webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, li ...
CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; prepare and separate material for further analys ...
Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is ...
Cellular Microscopy Phenotype Ontology (CMPO) is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell ...
CERES is a cryo-EM re-refinement system for continuous improvement of deposited models.
The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes.
The Recommended Metadata for Biological Images (REMBI) are a set of guidelines developed by the bioimaging community as a framework for discussing different aspects of useful sharing of imaging data. ...
Robust computational infrastructure capable of supporting the automatic and standardised benchmarking of image processing applications for cryoEM.
A service for evaluating the electron density (and, indirectly, some aspects of the model quality) of crystal structures deposited in the Protein Data Bank. In addition to electron density maps and to ...
Ontology to describe general clinical studies.
The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM) is a database of barcoded Chytridiomyceta and Blastocladiomycota cultures.
CoDNaS-RNA is a database of the Conformational Diversity in the Native State of RNA molecules. Each entry in CoDNaS-RNA is a redundant collection of known structures of the same RNA molecule, which ca ...
Scalable volumetric 3D and 4D database for the cloud.