Translocatome
Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting based machine learning algorithm (XGBoost), using highly curated positive and negative learning sets.
Description
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Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting based machine learning algorithm (XGBoost), using highly curated positive and negative learning sets.
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://translocatome.linkgroup.huWebpage
More detailed information about this field from each metasource.
http://translocatome.linkgroup.hu
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence:
Name: Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
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https://creativecommons.org/licenses/by-sa/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
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Translocatome: a novel resource for the analysis of protein translocation between cellular organelles
PMID: 30380112
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
Translocatome: a novel resource for the analysis of protein translocation between cellular organelles
PMID: 30380112
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Translocatome: a novel resource for the analysis of protein translocation between cellular organelles
PubMed citations: 7.
7 articles citing: Translocatome: a novel resource for the analysis of protein translocation between cellular organelles
Translocating proteins compartment-specifically alter the fate of epithelial-mesenchymal transition in a compartmentalized Boolean network model. PMID:35680961
Subcellular proteomics. PMID:34549195
A Novel XGBoost Method to Infer the Primary Lesion of 20 Solid Tumor Types From Gene Expression Data. PMID:33613644
Modular Reorganization of Signaling Networks during the Development of Colon Adenoma and Carcinoma. PMID:33562960
The role of 3'UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization. PMID:32484544
TRANSPIRE: A Computational Pipeline to Elucidate Intracellular Protein Movements from Spatial Proteomics Data Sets. PMID:32401031
Temporal dynamics of protein complex formation and dissociation during human cytomegalovirus infection. PMID:32041945
Tags:
Tags
More detailed information about this field from each metasource.
cellular localization
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
interactome
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein localization
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
signaling
metasource: Fairsharing.org
version: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
cellular localization
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
interactome
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein localization
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
signaling
metasource: Fairsharing.orgversion: FAIRsharing.org: Translocatome; Translocatome; DOI: https://doi.org/10.25504/FAIRsharing.FL1LNB; Last edited: Jan. 9, 2019, 3:07 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
cellular localization interactome network model protein interaction protein localization signaling
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