Mammalian Protein Localization Database
Names
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Mammalian Protein Localization Database
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
locate
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
Names
More detailed information about this field from each metasource.
Mammalian Protein Localization Database
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
locate
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
Names
More detailed information about this field from each metasource.
Mammalian Protein Localization Database
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
locate
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
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LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.
Description
More detailed information about this field from each metasource.
LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE is a curated, web-accessible database that houses data describing the membrane organization and subcellular localization of proteins from the FANTOM3 Isoform Protein Sequence set (1). Membrane organization is predicted by the high-throughput, computational pipeline MemO. The subcellular locations of selected proteins from this set were determined by a high-throughput, immunofluorescence-based assay and by manually reviewing over 1700 peer-reviewed publications. LOCATE represents the first effort to catalogue the experimentally-verified subcellular location and membrane organization of mammalian proteins using a high-throughput approach and provides localization data for nearly 40% of the mouse proteome.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of mouse proteins.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
Webpage:
http://locate.imb.uq.edu.au/Webpage
More detailed information about this field from each metasource.
http://locate.imb.uq.edu.au/
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
Licence:
Name: NIH Web Policies and NoticesLicence name
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NIH Web Policies and Notices
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
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https://www.nih.gov/web-policies-notices
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
LOCATE: a mammalian protein subcellular localization database
PMID: 17986452
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE: a mouse protein subcellular localization database
PMID: 16381849
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
Publications
More detailed information about this field from each metasource.
LOCATE: a mammalian protein subcellular localization database
PMID: 17986452
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LOCATE: a mouse protein subcellular localization database
PMID: 16381849
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
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LOCATE: a mammalian protein subcellular localization database
PubMed citations: 74.
74 articles citing: LOCATE: a mammalian protein subcellular localization database
Systematic evaluation and optimization of protein extraction parameters in diagnostic FFPE specimens. PMID:35501693
Spirocyclic dimer SpiD7 activates the unfolded protein response to selectively inhibit growth and induce apoptosis of cancer cells. PMID:35378132
SecProCT: In Silico Prediction of Human Secretory Proteins Based on Capsule Network and Transformer. PMID:34445760
Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly. PMID:33384371
CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins. PMID:32517646
Extracellular Vesicles Secreted by Corneal Epithelial Cells Promote Myofibroblast Differentiation. PMID:32357574
The mitochondrial protein PGAM5 suppresses energy consumption in brown adipocytes by repressing expression of uncoupling protein 1. PMID:32144202
In Silico Strategies in Tuberculosis Drug Discovery. PMID:32033144
Golgi-localized cyclophilin 21 proteins negatively regulate ABA signalling via the peptidyl prolyl isomerase activity during early seedling development. PMID:31786704
Cell maps on the human genome. PMID:30930962
Alanine Scanning Mutagenesis of the C-Terminal Cytosolic End of Gpm6a Identifies Key Residues Essential for the Formation of Filopodia. PMID:30233315
A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis. PMID:29928007
Integration of genome-scale metabolic networks into whole-body PBPK models shows phenotype-specific cases of drug-induced metabolic perturbation. PMID:29507756
Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine. PMID:28890846
In silico re-identification of properties of drug target proteins. PMID:28617227
Systems biology of facial development: contributions of ectoderm and mesenchyme. PMID:28363736
SheddomeDB: the ectodomain shedding database for membrane-bound shed markers. PMID:28361715
Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia. PMID:28176486
Secreted Proteins Defy the Expression Level-Evolutionary Rate Anticorrelation. PMID:28007979
Prediction of Protein-Protein Interactions by Evidence Combining Methods. PMID:27879651
Isolation of human trophoblastic extracellular vesicles and characterization of their cargo and antiviral activity. PMID:27780544
Phosphoproteomics reveals ALK promote cell progress via RAS/ JNK pathway in neuroblastoma. PMID:27732954
Unconventional secretory processing diversifies neuronal ion channel properties. PMID:27677849
RNALocate: a resource for RNA subcellular localizations. PMID:27543076
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
Human Protein Subcellular Localization with Integrated Source and Multi-label Ensemble Classifier. PMID:27323846
Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories. PMID:26845334
Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad. PMID:26581338
MetazSecKB: the human and animal secretome and subcellular proteome knowledgebase. PMID:26255309
A hepatic stellate cell gene expression signature associated with outcomes in hepatitis C cirrhosis and hepatocellular carcinoma after curative resection. PMID:26045137
LocSigDB: a database of protein localization signals. PMID:25725059
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. PMID:25348397
CHOPPI: a web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production. PMID:24888712
A Novel Type III Endosome Transmembrane Protein, TEMP. PMID:24710541
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. PMID:24573882
HMPAS: Human Membrane Protein Analysis System. PMID:24564858
Computational prediction of human salivary proteins from blood circulation and application to diagnostic biomarker identification. PMID:24324552
Age distribution patterns of human gene families: divergent for Gene Ontology categories and concordant between different subcellular localizations. PMID:24322347
Complex disease interventions from a network model for type 2 diabetes. PMID:23776558
Bioanalysis of eukaryotic organelles. PMID:23570618
Spatial and functional organization of mitochondrial protein network. PMID:23466738
Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates. PMID:23282184
Genes involved in host-parasite interactions can be revealed by their correlated expression. PMID:23275547
A survey of putative secreted and transmembrane proteins encoded in the C. elegans genome. PMID:22823938
Minimalist ensemble algorithms for genome-wide protein localization prediction. PMID:22759391
Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks. PMID:22035267
Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies. PMID:21918620
Network clustering revealed the systemic alterations of mitochondrial protein expression. PMID:21738461
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. PMID:21699738
Context-dependent transcriptional regulations between signal transduction pathways. PMID:21232126
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling. PMID:21144021
Gerontome: a web-based database server for aging-related genes and analysis pipelines. PMID:21143804
Network analysis of human protein location. PMID:21106131
LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. PMID:21071420
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. PMID:21037261
A testis-specific regulator of complex and hybrid N-glycan synthesis. PMID:20805325
GolgiP: prediction of Golgi-resident proteins in plants. PMID:20733061
A comprehensive comparison of transmembrane domains reveals organelle-specific properties. PMID:20603021
Communicating subcellular distributions. PMID:20552685
A screen for endocytic motifs. PMID:20214754
Protein subcellular localization profiling of breast cancer cells by dissociable antibody microarray staining. PMID:20127686
A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics. PMID:20087442
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins. PMID:20055997
Evolutionary descent of prion genes from the ZIP family of metal ion transporters. PMID:19784368
Retinoid metabolism and ALDH1A2 (RALDH2) expression are altered in the transgenic adenocarcinoma mouse prostate model. PMID:19549509
Statistical and visual differentiation of subcellular imaging. PMID:19302715
Predicted mouse peroxisome-targeted proteins and their actual subcellular locations. PMID:19091015
Genome-scale computational biology and bioinformatics in Australia. PMID:18769502
Predicting sub-Golgi localization of type II membrane proteins. PMID:18562268
The zebrafish secretome. PMID:18554177
The mannose 6-phosphate glycoprotein proteome. PMID:18507433
Protein databases on the internet. PMID:18265344
Visualizing and clustering high throughput sub-cellular localization imaging. PMID:18241353
Towards defining the nuclear proteome. PMID:18211718 -
LOCATE: a mouse protein subcellular localization database
PubMed citations: 32.
32 articles citing: LOCATE: a mouse protein subcellular localization database
The mitochondrial protein PGAM5 suppresses energy consumption in brown adipocytes by repressing expression of uncoupling protein 1. PMID:32144202
Systems biology of facial development: contributions of ectoderm and mesenchyme. PMID:28363736
Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia. PMID:28176486
Texture Descriptors Ensembles Enable Image-Based Classification of Maturation of Human Stem Cell-Derived Retinal Pigmented Epithelium. PMID:26895509
A Novel Type III Endosome Transmembrane Protein, TEMP. PMID:24710541
Automated protein subcellular localization based on local invariant features. PMID:23512411
Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses. PMID:23386199
Identification and analysis of biomarkers for mismatch repair proteins: A bioinformatic approach. PMID:23225975
Identification of CrkL-SH3 binding proteins from embryonic murine brain: implications for Reelin signaling during brain development. PMID:21879738
Proteomic analysis of metabolic, cytoskeletal and stress response proteins in human heart failure. PMID:21545686
A testis-specific regulator of complex and hybrid N-glycan synthesis. PMID:20805325
The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression. PMID:20388198
A screen for endocytic motifs. PMID:20214754
BayesMotif: de novo protein sorting motif discovery from impure datasets. PMID:20122242
Lipase maturation factor LMF1, membrane topology and interaction with lipase proteins in the endoplasmic reticulum. PMID:19783858
Protein-protein interaction as a predictor of subcellular location. PMID:19243629
Genome-wide analysis of cancer/testis gene expression. PMID:19088187
The mannose 6-phosphate glycoprotein proteome. PMID:18507433
DBMLoc: a Database of proteins with multiple subcellular localizations. PMID:18304364
Visualizing and clustering high throughput sub-cellular localization imaging. PMID:18241353
Towards defining the nuclear proteome. PMID:18211718
Gene regulatory networks in lactation: identification of global principles using bioinformatics. PMID:18039394
LOCATE: a mammalian protein subcellular localization database. PMID:17986452
The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research. PMID:17932059
Using biomarker signature patterns for an mRNA molecular diagnostic of mouse embryonic stem cell differentiation state. PMID:17605829
Fast automated cell phenotype image classification. PMID:17394669
Evaluation and comparison of mammalian subcellular localization prediction methods. PMID:17254308
The subcellular localization of the mammalian proteome comes a fraction closer. PMID:16938898
Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. PMID:16845118
Genome Network and FANTOM3: assessing the complexity of the transcriptome. PMID:16683037
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units. PMID:16683029
PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. PMID:16504016
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curated information
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein localization and targeting
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
membrane and lipoproteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: LOCATE; Mammalian Protein Localization Database; DOI: https://doi.org/10.25504/FAIRsharing.pcmg8s; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein localization and targeting
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
membrane and lipoproteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
protein folds and structural domains
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.566826
protein protein sequence protein localization and targeting membrane and lipoproteins proteomics model organisms protein folds and structural domains proteins
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