TargetMine
TargetMine integrates many types of data for human, rat and mouse. Flexible queries, export of results and data analysis are available.
Description
More detailed information about this field from each metasource.
TargetMine integrates many types of data for human, rat and mouse. Flexible queries, export of results and data analysis are available.
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://targetmine.mizuguchilab.org/targetmineWebpage
More detailed information about this field from each metasource.
http://targetmine.mizuguchilab.org/targetmine
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery
PMID: 21408081
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework
PMID: 26989145
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery
PMID: 21408081
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework
PMID: 26989145
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery
PubMed citations: 55.
55 articles citing: TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery
HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040
d-Serine Mediates Cellular Proliferation for Kidney Remodeling. PMID:35372967
PCA-based unsupervised feature extraction for gene expression analysis of COVID-19 patients. PMID:34456333
TrendyGenes, a computational pipeline for the detection of literature trends in academia and drug discovery. PMID:34344904
Integrative Analysis Reveals Common and Unique Roles of Tetraspanins in Fibrosis and Emphysema. PMID:33424923
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data. PMID:33275647
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma. PMID:32703153
Search for Therapeutic Agents for Cardiac Arrest Using a Drug Discovery Tool and Large-Scale Medical Information Database. PMID:31780928
Comorbidity of asthma and hypertension may be mediated by shared genetic dysregulation and drug side effects. PMID:31705029
The TargetMine Data Warehouse: Enhancement and Updates. PMID:31649722
Effects of Iron Oxide Nanoparticles (γ-Fe2O3) on Liver, Lung and Brain Proteomes following Sub-Acute Intranasal Exposure: A New Toxicological Assessment in Rat Model Using iTRAQ-Based Quantitative Proteomics. PMID:31635106
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases. PMID:31494632
Computing of Low Shear Stress-Driven Endothelial Gene Network Involved in Early Stages of Atherosclerotic Process. PMID:30356351
Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. PMID:30012088
Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism. PMID:29186632
Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates. PMID:28469246
Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosis. PMID:28453527
Principal Components Analysis Based Unsupervised Feature Extraction Applied to Gene Expression Analysis of Blood from Dengue Haemorrhagic Fever Patients. PMID:28276456
Gene expression profiles reveal key pathways and genes associated with neuropathic pain in patients with spinal cord injury. PMID:28260076
Classification of idiopathic interstitial pneumonias using anti-myxovirus resistance-protein 1 autoantibody. PMID:28230086
Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice. PMID:28097151
Identification of temporal genes involved in the mechanisms of spinal cord injury. PMID:28071686
Pharos: Collating protein information to shed light on the druggable genome. PMID:27903890
Integrated Analysis of DNA Methylation and mRNA Expression Profiles Data to Identify Key Genes in Lung Adenocarcinoma. PMID:27610375
Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study. PMID:27564214
SFRP1 is a possible candidate for epigenetic therapy in non-small cell lung cancer. PMID:27534621
Genomic expression profiling and bioinformatics analysis on diabetic nephrology with ginsenoside Rg3. PMID:27279428
CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction. PMID:27059647
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. PMID:26989145
Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin lineage. PMID:26677731
Profiles of microRNA networks in intestinal epithelial cells in a mouse model of colitis. PMID:26647826
Gene Network Rewiring to Study Melanoma Stage Progression and Elements Essential for Driving Melanoma. PMID:26558755
Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data. PMID:26556537
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment. PMID:26494363
OVA: integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioritization. PMID:26272982
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules. PMID:26147120
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. PMID:26130662
Cross-organism analysis using InterMine. PMID:26097192
Bioinformatics analyses of significant prognostic risk markers for thyroid papillary carcinoma. PMID:25908172
Pathway-based analysis of genome-wide siRNA screens reveals the regulatory landscape of APP processing. PMID:25723573
ReNE: a cytoscape plugin for regulatory network enhancement. PMID:25541727
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. PMID:25404129
Integrated pathway clusters with coherent biological themes for target prioritisation. PMID:24918583
InterMine: extensive web services for modern biology. PMID:24753429
A systematic analysis of a mi-RNA inter-pathway regulatory motif. PMID:24152805
InterMOD: integrated data and tools for the unification of model organism research. PMID:23652793
A multi-layer inference approach to reconstruct condition-specific genes and their regulation. PMID:23610368
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework. PMID:23383610
Systems genetics in "-omics" era: current and future development. PMID:23138757
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. PMID:23023984
Prioritization of candidate genes for attention deficit hyperactivity disorder by computational analysis of multiple data sources. PMID:22773342
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments. PMID:22536968
YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. PMID:22434830
MitoMiner: a data warehouse for mitochondrial proteomics data. PMID:22121219
modMine: flexible access to modENCODE data. PMID:22080565 -
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework
PubMed citations: 14.
14 articles citing: An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework
Proteomic and Transcriptomic Profiling Reveals Mitochondrial Oxidative Phosphorylation as Therapeutic Vulnerability in Androgen Receptor Pathway Active Prostate Tumors. PMID:35406510
Key regulatory genes and signaling pathways involved in islet culture: a bioinformatic analysis. PMID:33564361
Integrative Analysis Reveals Common and Unique Roles of Tetraspanins in Fibrosis and Emphysema. PMID:33424923
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data. PMID:33275647
Search for Therapeutic Agents for Cardiac Arrest Using a Drug Discovery Tool and Large-Scale Medical Information Database. PMID:31780928
'One DB to rule them all'-the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs. PMID:31682269
The TargetMine Data Warehouse: Enhancement and Updates. PMID:31649722
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. PMID:30864352
Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome. PMID:30683046
Double deletion of tetraspanins CD9 and CD81 in mice leads to a syndrome resembling accelerated aging. PMID:29572511
Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism. PMID:29186632
Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates. PMID:28469246
Hypothalamic transcriptomic alterations in male and female California mice (Peromyscus californicus) developmentally exposed to bisphenol A or ethinyl estradiol. PMID:28196854
Inflammation Thread Runs across Medical Laboratory Specialities. PMID:27493451
Tags:
Tags
More detailed information about this field from each metasource.
chemical entity
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene-disease association
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
high-throughput screening
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
target
metasource: Fairsharing.org
version: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
chemical entity
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene-disease association
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
high-throughput screening
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
target
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
chemical entity gene gene-disease association high-throughput screening micro rna molecular interaction protein protein domain protein interaction protein structure target
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