HumanMine
HumanMine integrates many types of data for Homo sapiens and Mus musculus. Users can run flexible queries, export results and analyse lists of data.
Description
More detailed information about this field from each metasource.
HumanMine integrates many types of data for Homo sapiens and Mus musculus. Users can run flexible queries, export results and analyse lists of data.
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
HumanMine integrates many types of data for Homo sapiens and Mus musculus
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
Webpage:
https://www.humanmine.org/Webpage
More detailed information about this field from each metasource.
https://www.humanmine.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://www.humanmine.org/humanmine
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
Licence:
Name: LGPL-2.1Licence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
InterMine: extensive web services for modern biology
PMID: 24753429
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:57.432616
Publications
More detailed information about this field from each metasource.
InterMine: extensive web services for modern biology
PMID: 24753429
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
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InterMine: extensive web services for modern biology
PubMed citations: 58.
58 articles citing: InterMine: extensive web services for modern biology
HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040
Tumor Heterogeneity and Molecular Characteristics of Glioblastoma Revealed by Single-Cell RNA-Seq Data Analysis. PMID:35327982
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
Clin.iobio: A Collaborative Diagnostic Workflow to Enable Team-Based Precision Genomics. PMID:35055388
Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources. PMID:35037201
Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses. PMID:34747465
Translating synthetic natural language to database queries with a polyglot deep learning framework. PMID:34531510
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility. PMID:34329465
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Signalling pathways and mechanistic cues highlighted by transcriptomic analysis of primordial, primary, and secondary ovarian follicles in domestic cat. PMID:33514822
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database. PMID:33193550
The Zebrafish Information Network: major gene page and home page updates. PMID:33170210
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update. PMID:33104800
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Machado: Open source genomics data integration framework. PMID:32930331
TargetDB: A target information aggregation tool and tractability predictor. PMID:32877430
A population genomics appraisal suggests independent dispersals for bitter and sweet manioc in Brazilian Amazonia. PMID:31993081
Galaxy External Display Applications: closing a dataflow interoperability loop. PMID:31959996
Investigating the energy crisis in Alzheimer disease using transcriptome study. PMID:31811163
The TargetMine Data Warehouse: Enhancement and Updates. PMID:31649722
WormBase: a modern Model Organism Information Resource. PMID:31642470
Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. PMID:31590243
Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. PMID:31214244
NetR and AttR, Two New Bioinformatic Tools to Integrate Diverse Datasets into Cytoscape Network and Attribute Files. PMID:31159440
The genome of cowpea (Vigna unguiculata [L.] Walp.). PMID:31017340
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets. PMID:30944313
UTAP: User-friendly Transcriptome Analysis Pipeline. PMID:30909881
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. PMID:30864352
RepetDB: a unified resource for transposable element references. PMID:30719103
TogoGenome/TogoStanza: modularized Semantic Web genome database. PMID:30624651
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. PMID:30458802
MitoMiner v4.0: an updated database of mitochondrial localization evidence, phenotypes and diseases. PMID:30398659
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes. PMID:30357405
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future. PMID:30319557
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. PMID:30115101
Oak genome reveals facets of long lifespan. PMID:29915331
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. PMID:29761466
Update notifications for the BioCyc collection of databases. PMID:29220477
Xenbase: a genomic, epigenomic and transcriptomic model organism database. PMID:29059324
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. PMID:28605774
Lotus Base: An integrated information portal for the model legume Lotus japonicus. PMID:28008948
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects. PMID:27006757
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. PMID:26989145
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast. PMID:26635866
The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining. PMID:26631124
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. PMID:26481361
MitoMiner v3.1, an update on the mitochondrial proteomics database. PMID:26432830
Allele, phenotype and disease data at Mouse Genome Informatics: improving access and analysis. PMID:26162703
Mouse Genome Database: From sequence to phenotypes and disease models. PMID:26150326
Application of comparative biology in GO functional annotation: the mouse model. PMID:26141960
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. PMID:26130662
Cross-organism analysis using InterMine. PMID:26097192
MouseMine: a new data warehouse for MGI. PMID:26092688
Shared resources, shared costs--leveraging biocuration resources. PMID:25776020
Araport: the Arabidopsis information portal. PMID:25414324 - http://dx.doi.org/10.1093/bioinformatics/bts577
Tags:
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
homologous
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular function
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
data management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:57.432616
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:57.432616
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:57.432616
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
homologous
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular function
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanMine; HumanMine; DOI: https://doi.org/10.25504/FAIRsharing.RJ99Pj; Last edited: March 10, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
data management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:57.432616
disease gene homologous molecular function molecular interaction protein single nucleotide polymorphism data management genomics proteomics
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