Protein-Chemical Structural Interactions
Names
More detailed information about this field from each metasource.
Protein-Chemical Structural Interactions
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ProtChemSI
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
protchemsi
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
Names
More detailed information about this field from each metasource.
Protein-Chemical Structural Interactions
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ProtChemSI
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
protchemsi
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
Other names: ProtChemSI, protchemsi
Names
More detailed information about this field from each metasource.
Protein-Chemical Structural Interactions
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ProtChemSI
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
protchemsi
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structures of protein interactions with low molecular weight.
Description
More detailed information about this field from each metasource.
Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structures of protein interactions with low molecular weight.
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Protein-Chemical Structural Interactions
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A network of protein-chemical structure interactions. Progress in structure determination methods means that the set of experimentally determined 3D structures of proteins in complex with small molecules is growing exponentially. ProtChemSI exploits and extends this useful set of structures by both collecting and annotating the existing data as well as providing models of potential complexes inferred by protein or chemical structure similarity.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
Webpage:
http://pcidb.russelllab.org/Webpage
More detailed information about this field from each metasource.
http://pcidb.russelllab.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
Publications:
Publications
More detailed information about this field from each metasource.
Combinations of protein-chemical complex structures reveal new targets for established drugs
PMID: 21573205
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ProtChemSI: a network of protein-chemical structural interactions
PMID: 22110041
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
http://dx.doi.org/10.1093/nar/GKR1049
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Combinations of protein-chemical complex structures reveal new targets for established drugs
PMID: 21573205
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ProtChemSI: a network of protein-chemical structural interactions
PMID: 22110041
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
http://dx.doi.org/10.1093/nar/GKR1049
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Combinations of protein-chemical complex structures reveal new targets for established drugs
PubMed citations: 13.
13 articles citing: Combinations of protein-chemical complex structures reveal new targets for established drugs
Identification of the Prognostic Signatures of Glioma With Different PTEN Status. PMID:34336645
Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates. PMID:29551288
Insights into cancer severity from biomolecular interaction mechanisms. PMID:27698488
Release of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discovery. PMID:26642067
A fast topological analysis algorithm for large-scale similarity evaluations of ligands and binding pockets. PMID:26561508
Ligand-target prediction by structural network biology using nAnnoLyze. PMID:25816344
Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions. PMID:25392414
PeptiSite: a structural database of peptide binding sites in 4D. PMID:24406170
Target prediction for an open access set of compounds active against Mycobacterium tuberculosis. PMID:24098102
Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key. PMID:23805191
ProtChemSI: a network of protein-chemical structural interactions. PMID:22110041
Pocketome: an encyclopedia of small-molecule binding sites in 4D. PMID:22080553
STITCH 3: zooming in on protein-chemical interactions. PMID:22075997 -
ProtChemSI: a network of protein-chemical structural interactions
PubMed citations: 9.
9 articles citing: ProtChemSI: a network of protein-chemical structural interactions
Impact of Aspirin Eugenol Ester on Cyclooxygenase-1, Cyclooxygenase-2, C-Reactive Protein, Prothrombin and Arachidonate 5-Lipoxygenase in Healthy Rats. PMID:29552053
Release of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discovery. PMID:26642067
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. PMID:26590256
A fast topological analysis algorithm for large-scale similarity evaluations of ligands and binding pockets. PMID:26561508
Classification of Beta-lactamases and penicillin binding proteins using ligand-centric network models. PMID:25689853
Towards structural systems pharmacology to study complex diseases and personalized medicine. PMID:24830652
Target prediction for an open access set of compounds active against Mycobacterium tuberculosis. PMID:24098102
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. PMID:23118479
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. PMID:23087378 - http://dx.doi.org/10.1093/nar/GKR1049
Tags:
Tags
More detailed information about this field from each metasource.
chemical structure
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ligand
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein structure
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
structural biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
structure prediction
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456
Tags
More detailed information about this field from each metasource.
chemical structure
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
ligand
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtChemSI; Protein-Chemical Structural Interactions; DOI: https://doi.org/10.25504/FAIRsharing.6zk9ea; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein structure
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
structural biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
structure prediction
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.464456
chemical structure ligand molecular interaction protein protein interaction structure structure protein structure small molecule structural biology molecular interactions, pathways and networks structure prediction proteins
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