Mammalian Promoter Database (MPromDb)
Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any combination of tissue/cell specificity, Known/Novel, CpG/NonCpG, and protein-coding/non-coding gene promoters. Also integrated is a GBrowse genome browser for visualization of ChIP-seq profiles and to display the annotations.
Description
More detailed information about this field from each metasource.
Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any combination of tissue/cell specificity, Known/Novel, CpG/NonCpG, and protein-coding/non-coding gene promoters. Also integrated is a GBrowse genome browser for visualization of ChIP-seq profiles and to display the annotations.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
Webpage:
http://bioinformatics.wistar.upenn.edu/MPromDb/Webpage
More detailed information about this field from each metasource.
http://bioinformatics.wistar.upenn.edu/MPromDb/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
Publications:
Publications
More detailed information about this field from each metasource.
MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
PMID: 21097880
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
Publications
More detailed information about this field from each metasource.
MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
PMID: 21097880
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
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MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
PubMed citations: 17.
17 articles citing: MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
Editor's Highlight: Neonatal Activation of the Xenobiotic-Sensors PXR and CAR Results in Acute and Persistent Down-regulation of PPARα-Signaling in Mouse Liver. PMID:27413110
The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts. PMID:26908617
VEGFR-1 Pseudogene Expression and Regulatory Function in Human Colorectal Cancer Cells. PMID:26041938
Constrained transcription factor spacing is prevalent and important for transcriptional control of mouse blood cells. PMID:25428352
Protein kinase A activation enhances β-catenin transcriptional activity through nuclear localization to PML bodies. PMID:25299576
Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems. PMID:25150862
Similarity in targets with REST points to neural and glioblastoma related miRNAs. PMID:24728992
A provisional gene regulatory atlas for mouse heart development. PMID:24421884
Synthetic circuit of inositol phosphorylceramide synthase in Leishmania : a chemical biology approach. PMID:24386012
Identification and Validation of a Putative Polycomb Responsive Element in the Human Genome. PMID:23805300
Definition of RNA polymerase II CoTC terminator elements in the human genome. PMID:23562152
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
Identification of regulatory regions of bidirectional genes in cervical cancer. PMID:23369456
Alternative transcription start site selection leads to large differences in translation activity in yeast. PMID:23105001
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Using Galaxy to perform large-scale interactive data analyses. PMID:22700312
Using galaxy to perform large-scale interactive data analyses. PMID:18428782
Tags:
Tags
More detailed information about this field from each metasource.
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
chip-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
epigenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
data submission, annotation and curation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313
Tags
More detailed information about this field from each metasource.
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
chip-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
epigenetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
data submission, annotation and curation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:00.038313
transcription factors and regulatory sites gene transcripts chip-seq epigenetics data submission, annotation and curation
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