FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

Other names: BC

Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.

Webpage:

https://neuroviisas.med.uni-rostock.de/connectome/index.php

Publications: (7)

Publications
More detailed information about this field from each metasource.

Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics
PMID: 29464318
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

neuroVIISAS: approaching multiscale simulation of the rat connectome
PMID: 22350719
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

The connectome of the basal ganglia
PMID: 25432770
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

The intrinsic connectome of the rat amygdala
PMID: 23248583
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

Prediction of regional functional impairment following experimental stroke via connectome analysis
PMID: 28406178
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

Towards Differential Connectomics with NeuroVIISAS
PMID: 30014279
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

Connectome verification: inter-rater and connection reliability of tract-tracing-based intrinsic hypothalamic connectivity
PMID: 29897426
metasource: Fairsharing.org
version: FAIRsharing.org: BC; Brainstem Connectome; DOI: https://doi.org/10.25504/FAIRsharing.hD7sXQ; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics PubMed citations: 28.

28 articles citing: Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics

Simulated Attack Reveals How Lesions Affect Network Properties in Poststroke Aphasia. PMID:35545436
The brainstem connectome database. PMID:35414055
Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review. PMID:34979249
Mapping covariance in brain FDG uptake to structural connectivity. PMID:34677627
Graph theoretical structural connectome analysis of the brain in patients with chronic spinal cord injury: preliminary investigation. PMID:34274953
The R1-weighted connectome: complementing brain networks with a myelin-sensitive measure. PMID:34189369
Interactions Between Aging and Alzheimer's Disease on Structural Brain Networks. PMID:34177548
Structural connectivity changes in the cerebral pain matrix in burning mouth syndrome: a multi-shell, multi-tissue-constrained spherical deconvolution model analysis. PMID:34142212
Extensive Cortical Connectivity of the Human Hippocampal Memory System: Beyond the "What" and "Where" Dual Stream Model. PMID:34013342
Secondary Degeneration of White Matter After Focal Sensorimotor Cortical Ischemic Stroke in Rats. PMID:33536869
Microsurgical anatomy of the amygdaloid body and its connections. PMID:33528620
Use of computational fluid dynamics for 3D fiber tract visualization on human high-thickness histological slices: histological mesh tractography. PMID:33389040
Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a reference. PMID:33339834
U-shape short-range extrinsic connectivity organisation around the human central sulcus. PMID:33245395
Diffusion Tensor Imaging-Based Studies at the Group-Level Applied to Animal Models of Neurodegenerative Diseases. PMID:32982659
Sensory-motor network topology in multiple sclerosis: Structural connectivity analysis accounting for intrinsic density discrepancy. PMID:32412678
MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain. PMID:32410977
How Human Is Human Connectional Neuroanatomy? PMID:32351367
Primate homologs of mouse cortico-striatal circuits. PMID:32298231
Indirect frontocingulate structural connectivity predicts clinical response to accelerated rTMS in major depressive disorder. PMID:31990490
Distinct structure-function relationships across cortical regions and connectivity scales in the rat brain. PMID:31919379
Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain. PMID:31637337
The road ahead in clinical network neuroscience. PMID:31637334
Finding maximally disconnected subnetworks with shortest path tractography. PMID:31491834
Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering. PMID:30875144
Quantification of structural brain connectivity via a conductance model. PMID:30677502
The Nomenclature of Human White Matter Association Pathways: Proposal for a Systematic Taxonomic Anatomical Classification. PMID:30459566
A systematic review on the quantitative relationship between structural and functional network connectivity strength in mammalian brains. PMID:30375267
neuroVIISAS: approaching multiscale simulation of the rat connectome PubMed citations: 19.

19 articles citing: neuroVIISAS: approaching multiscale simulation of the rat connectome

The brainstem connectome database. PMID:35414055
Olfactory Bulb D2/D3 Receptor Availability after Intrastriatal Botulinum Neurotoxin-A Injection in a Unilateral 6-OHDA Rat Model of Parkinson's Disease. PMID:35202123
Distinct structure-function relationships across cortical regions and connectivity scales in the rat brain. PMID:31919379
A systematic review on the quantitative relationship between structural and functional network connectivity strength in mammalian brains. PMID:30375267
Towards Differential Connectomics with NeuroVIISAS. PMID:30014279
Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics. PMID:29464318
A multiscale cerebral neurochemical connectome of the rat brain. PMID:28671956
Prediction of regional functional impairment following experimental stroke via connectome analysis. PMID:28406178
Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. PMID:27557104
Building the Ferretome. PMID:27242503
Brain-Wide Mapping of Axonal Connections: Workflow for Automated Detection and Spatial Analysis of Labeling in Microscopic Sections. PMID:27148038
Integrating Visualizations into Modeling NEST Simulations. PMID:26733860
Golgi: Interactive Online Brain Mapping. PMID:26635596
Photonics meets connectomics: case of diffuse, long-range horizontal projections in rat cortex. PMID:26158017
The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. PMID:25682754
The mind-brain relationship as a mathematical problem. PMID:24967307
BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. PMID:24668342
CoCoMac 2.0 and the future of tract-tracing databases. PMID:23293600
The intrinsic connectome of the rat amygdala. PMID:23248583
The connectome of the basal ganglia PubMed citations: 12.

12 articles citing: The connectome of the basal ganglia

A New Method on Construction of Brain Effective Connectivity Based on Functional Magnetic Resonance Imaging. PMID:35419076
The brainstem connectome database. PMID:35414055
A biologically constrained spiking neural network model of the primate basal ganglia with overlapping pathways exhibits action selection. PMID:32564449
Structural and Functional Alterations in Hemodialysis Patients: A Voxel-Based Morphometry and Functional Connectivity Study. PMID:32218727
Alcohol effects on globus pallidus connectivity: Role of impulsivity and binge drinking. PMID:32214339
Relating network connectivity to dynamics: opportunities and challenges for theoretical neuroscience. PMID:31319287
Towards Differential Connectomics with NeuroVIISAS. PMID:30014279
Atlas of the Striatum and Globus Pallidus in the Tree Shrew: Comparison with Rat and Mouse. PMID:29508249
Botulinum Neurotoxin A Injected Ipsilaterally or Contralaterally into the Striatum in the Rat 6-OHDA Model of Unilateral Parkinson's Disease Differently Affects Behavior. PMID:28680396
A multiscale cerebral neurochemical connectome of the rat brain. PMID:28671956
Prediction of regional functional impairment following experimental stroke via connectome analysis. PMID:28406178
How does environmental enrichment reduce repetitive motor behaviors? Neuronal activation and dendritic morphology in the indirect basal ganglia pathway of a mouse model. PMID:26620495
The intrinsic connectome of the rat amygdala PubMed citations: 11.

11 articles citing: The intrinsic connectome of the rat amygdala

The brainstem connectome database. PMID:35414055
Identifying brain regions supporting amygdalar functionality: Application of a novel graph theory technique. PMID:34571162
Corticosterone in the ventral hippocampus differentially alters accumbal dopamine output in drug-naïve and amphetamine-withdrawn rats. PMID:31881169
Towards Differential Connectomics with NeuroVIISAS. PMID:30014279
A multiscale cerebral neurochemical connectome of the rat brain. PMID:28671956
Prediction of regional functional impairment following experimental stroke via connectome analysis. PMID:28406178
Comparative Distribution of Relaxin-3 Inputs and Calcium-Binding Protein-Positive Neurons in Rat Amygdala. PMID:27092060
Topological organization of connectivity strength in the rat connectome. PMID:25697666
Graph analysis of the anatomical network organization of the hippocampal formation and parahippocampal region in the rat. PMID:25618022
Functional connectivity-based parcellation and connectome of cortical midline structures in the mouse: a perfusion autoradiography study. PMID:24966831
A mesoscale connectome of the mouse brain. PMID:24695228
Prediction of regional functional impairment following experimental stroke via connectome analysis PubMed citations: 7.

7 articles citing: Prediction of regional functional impairment following experimental stroke via connectome analysis

Local field potentials identify features of cortico-hippocampal communication impacted by stroke and environmental enrichment therapy. PMID:34111845
Cortical stroke affects activity and stability of theta/delta states in remote hippocampal regions. PMID:31947036
Distinct structure-function relationships across cortical regions and connectivity scales in the rat brain. PMID:31919379
Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI. PMID:31796741
Experimental cortical stroke induces aberrant increase of sharp-wave-associated ripples in the hippocampus and disrupts cortico-hippocampal communication. PMID:31558106
A systematic review on the quantitative relationship between structural and functional network connectivity strength in mammalian brains. PMID:30375267
Towards Differential Connectomics with NeuroVIISAS. PMID:30014279