Tag: brain

The Human Protein Atlas is program started with the aim to map of all the human proteins in cells, tissues and organs using integration of various omics technologies. It consists of three parts: Tissue Atlas showing the distribution of proteins acros ...

NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication in the neurosciences. One of the goals of the Neuro ...

ABA Adult Mouse Brain is a standardised collection of the expression patterns of thousands of adult brain genes. This resource can be used for a vast array of research on brain organisation and function. There are lighter versions of this ontology th ...

Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public so ...

The Human Connectome Project (HCP) houses and distributes public connectome study data for a series of studies that focus on the connections within the human brain.

The OpenNeuro project (formerly known as the OpenfMRI project) was established in 2010 to provide a resource for researchers interested in making their neuroimaging data openly available to the research community. It is managed by Russ Poldrack and C ...

ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. A ModelDB entry contains a model's source code, concise description, and a citation of the article that published it. Models can be code ...

These reporting guidelines were developed by the Committee on Best Practices in Data Analysis and Sharing (COBIDAS) of the Organization for Human Brain Mapping.

Neuroimaging Informatics Tools and Resources Collaboratory Resources Registry (NITRC-R) describes software tools and resources, vocabularies, test data, and databases. It is intended to extend the impact and longevity of previously funded neuroimagin ...

The OASIS datasets provide the community with open access to a significant database of neuroimaging and processed multi-modal imaging data across a broad demographic, cognitive, and genetic spectrum an easily accessible platform for use in neuroimagi ...

This resource details DNA methylation profiles in human and mouse brain. This database includes genome-wide DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end ...

The InterLex terminology is a lexicon of biomedical terms built on the foundation of NeuroLex and contains all of the existing NeuroLex terms. The initial entries in NeuroLex were built from the NIFSTD ontologies and BIRNLex (Biomedical Informatics R ...

VFB is an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster. Our goal is to make it easier for researchers to find relevant anatomical information and reagent ...

Minimal Information for Neural ElectroMagnetic Ontologies (MINEMO; formerly "MIEME" or "MINIerp") is the minimal set of experiment meta-data that is required for datasets that are used in the NEMO project. MINEMO extends MINI (Minimal Information for ...

Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from ove ...

The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. A set of temporal clini ...

The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomics, and other data types. It was developed to share data across the entire ...

NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.

This module represents the formalised opinion of the authors and the CARMEN consortium, which identifies the minimum information required to report the use of electrophysiology in a neuroscience study, for submission to the CARMEN system

Standards for “Minimum Information about a Animal Spinal Cord Injury Experiment” (MIASCI) facilitates bioinformatic efforts and allow investigators to more accurately replicate and extend studies.

The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scans (MRI, fMRI and DTI) hosted at UCLA and open to all pain investigators.

Brainlife is an open, online platform that provides seamless access to cloud computing infrastructure and brain data and data derivatives. It aims to address challenges to neuroscience open sharing and reproducibility by providing integrative mechani ...

Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis ...

The Neuroimaging Data Model (NIDM) is a collection of specification documents and examples that outline a domain specific extension to the W3C Provenance Data Model (PROV-DM) for the exchange and sharing of human brain imaging data. The goal of the d ...

NIDM-Results is a data model that enable sharing neuroimaging results using a common descriptive standard across neuroimaging software. NIDM-Results focuses on mass-univariate studies and is mostly targeted at fMRI but is also suitable for anatomical ...

Brainbase is a data management, collaboration and sharing platform for the human neuroscience community. The platform provides private research collaboration workspaces, tools to flexibly organize and track subjects and sessions within studies, valid ...

Samples and data for following disorders: Alzheimer's ,Cerebrovascular ,Degenerative brain disorder ,Fit and well, Glioma ,Meningitis ,Multiple sclerosis ,Progressive sclerosing poliodystrophy and others. Full list in Description… BRAIN UK is a virtu ...

The Brain Region and Cell Type terminology (BRCT) describes brain anatomy with a top-down granularity, from gross regions to cell types. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org).

EBRAINS is a platform for sharing brain research data ranging in type as well as spatial and temporal scale. The EBRAINS data curation service aims to provide maximum impact, visibility, reusability, and longevity. The user interface of the EBRAINS K ...

STAB is a comprehensive cell atlas resource for the human brain, containing single-cell gene expression profiling of 42 cell subtypes across 20 brain regions and 11 developmental periods. With cell subtypes and their marker genes defined by a unified ...

CABRO is a web ontology for the semantic representation of the computer assisted brain trauma rehabilitation domain. This research area employs the use of robotic devices, adaptation software and machine learning to facilitate interactive, adaptive a ...

The Donders Institute for Brain, Cognition and Behavior at the Radboud University created the Donders Repository for archiving, preserving and sharing the research data generated and processed at the institute.

Collection of samples and data across the following diseases: Alzheimer's disease (disorder), Asthma (disorder), Atrial fibrillation and flutter (disorder), Cerebrovascular disease (disorder) See full list in description. The UK Brain Bank Network is ...

Collection of samples and data across the following diseases: Epilepsy (disorder) The Epilepsy Society Brain and Tissue Bank is a recently established tissue bank at the Institute of Neurology, which has ethical approval and is supported by the Epile ...

Eye data for those identified by having an ED admission and acute care for their diabetes at QE Hospital, Birmingham. Key data included are demographics, duration of diabetes, outcomes, comorbidities, national screening diabetic grade and visual data ...

The Brain Transcriptome Database (BrainTx) project aims to create an integrated platform to visualize and analyze our original transcriptome data and publicly accessible transcriptome data related to the genetics that underlie the development, functi ...

This website makes data available from the first round of data sharing projects that were supported by the CRCNS funding program. To enable concerted efforts in understanding the brain experimental data and other resources such as stimuli and analysi ...

NeuGRID is a secure data archiving and HPC processing system. The neuGRID platform uses a robust infrastructure to provide researchers with a simple interface for analysing, searching, retrieving and disseminating their biomedical data. With hundreds ...

The Neuroimaging Informatics Tools and Resources Collaboratory Image Repository (NITRC-IR) provides searchable and downloadable publicly available data sets for neuroimaging research. This includes thousands of DICOM, NIfTI and BIDS normal subjects a ...

Alzforum is an independent research project to develop an online community resource to manage scientific knowledge, information, and data about Alzheimer disease (AD).

An open access data, tools, and compute resource for assessing and processing human NeuroElectroMagnetic data shared by its authors thru OpenNeuro.org.

The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centraliz ...

>>>!!!<<< As stated 2017-05-16 The BIRN project was finished a few years ago. The web portal is no longer live.>>>!!!<<< BIRN is a national initiative to advance biomedical research through data sharing and online collaboration. It supports multi-si ...

OHSU Digital Commons is a repository for the scholarly and creative work of Oregon Health & Science University. Developed by the OHSU Library, Digital Commons provides the university community with a platform for publishing and accessing content prod ...

REGARDS is an observational study of risk factors for stroke in adults 45 years or older. 30,239 participants were recruited between January 2003 and October 2007. They completed a telephone interview followed by an in-home physical exam. Measurem ...

The Cognitive Function and Ageing Studies (CFAS) are population based studies of individuals aged 65 years and over living in the community, including institutions, which is the only large multi-centred population-based study in the UK that has reach ...