Mouse Phenome Database
Names
More detailed information about this field from each metasource.
Mouse Phenome Database
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
MPD
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
mpd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
Names
More detailed information about this field from each metasource.
Mouse Phenome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
MPD
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
mpd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
Names
More detailed information about this field from each metasource.
Mouse Phenome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
MPD
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
mpd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public sources. MPD has three major types of strain-centric data sets: phenotype strain surveys, SNP and variation data, and gene expression strain surveys.
Description
More detailed information about this field from each metasource.
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public sources. MPD has three major types of strain-centric data sets: phenotype strain surveys, SNP and variation data, and gene expression strain surveys.
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Mouse Phenome Database (MPD) is a web-accessible community data repository and platform for data analysis and in silico hypothesis testing for the laboratory mouse. The Mouse Phenome Project is an ongoing effort to collect phenotypic and genotypic data from inbred strains of mice and their derivatives. As part of a community effort, researchers submit strain characteristics data for inclusion in MPD. Detailed protocols and environmental conditions are required and are posted on the website. Data are formatted and annotated to maximize the value and utility of the data. Data sets are accessible for downloading or for online analysis using MPD visualization and analysis tools. Statistics are computed for each data set, and graphical and tabular summaries are available. Tools are provided to compare strains, find compelling correlations between measurements, and identify mouse models. In addition, MPD houses a large collection of SNPs (also generated by members of the community and large genotyping consortia). SNP tools are offered for custom retrievals with filtering options based on data source, strain, genomic location, and gene annotations. MPD tools are available to help link phenotype and genotype. Electronic access to centralized strain data enables biomedical researchers to choose appropriate mouse strains for many systems-based applications. Currently MPD contains over 900 phenotypic measurements (includes pending data) and SNP alleles for ~ 10 million genome-wide locations. MPD facilitates research that uses the mouse to identify and determine the function of genes participating in normal and disease pathways.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Mouse Phenome Database (MPD; phenome.jax.org) has characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies.
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
Mouse Phenome Database: houses a wealth of strain characteristics data to facilitate the use of the laboratory mouse in translational research for human health and disease. Data sets are voluntarily contributed by researchers from a variety of institutions. MPD maintains a growing collection of standardized reference data that assists investigators in selecting mouse strains for research applications.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
Webpage:
http://phenome.jax.orgWebpage
More detailed information about this field from each metasource.
http://phenome.jax.org
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://phenome.jax.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
Licence:
Name: CopyrightsLicence name
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Copyrights
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
Licence URL
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http://phenome.jax.org/db/q?rtn=docs/termsofuse
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
Publications:
(6)
Publications
More detailed information about this field from each metasource.
A mouse phenome project
PMID: 10967127
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Mouse Phenome Project
PMID: 15619963
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Mouse phenome database
PMID: 18987003
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
A collaborative database of inbred mouse strain characteristics
PMID: 15130929
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Mouse Phenome Database (MPD)
PMID: 22102583
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
http://dx.doi.org/10.1093/nar/gkt1159
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
A mouse phenome project
PMID: 10967127
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Mouse Phenome Project
PMID: 15619963
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Mouse phenome database
PMID: 18987003
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
A collaborative database of inbred mouse strain characteristics
PMID: 15130929
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Mouse Phenome Database (MPD)
PMID: 22102583
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
http://dx.doi.org/10.1093/nar/gkt1159
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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A mouse phenome project
PubMed citations: 59.
59 articles citing: A mouse phenome project
Role of Environment and Experimenter in Reproducibility of Behavioral Studies With Laboratory Mice. PMID:35250504
Genetic quality assurance and genetic monitoring of laboratory mice and rats: FELASA Working Group Report. PMID:31431136
High-Diversity Mouse Populations for Complex Traits. PMID:31133439
Interfrontal Bone Among Inbred Strains of Mice and QTL Mapping. PMID:31001328
Fishing forward and reverse: Advances in zebrafish phenomics. PMID:30130581
High-throughput mouse phenomics for characterizing mammalian gene function. PMID:29626206
Active State Organization of Spontaneous Behavioral Patterns. PMID:29348406
Proteomic approaches in microalgae: perspectives and applications. PMID:28667637
Applicability, usability, and limitations of murine embryonic imaging with optical coherence tomography and optical projection tomography. PMID:27375945
Optical coherence tomography for embryonic imaging: a review. PMID:27228503
Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare. PMID:27130220
Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome Database. PMID:26286858
Initial locomotor sensitivity to cocaine varies widely among inbred mouse strains. PMID:25727211
Accessing Data Resources in the Mouse Phenome Database for Genetic Analysis of Murine Life Span and Health Span. PMID:25533306
A cellular genetics approach identifies gene-drug interactions and pinpoints drug toxicity pathway nodes. PMID:25221565
Phenomics of cardiac chloride channels. PMID:23720326
Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse. PMID:23223940
Susceptibility to progressive Cryptococcus neoformans pulmonary infection is regulated by loci on mouse chromosomes 1 and 9. PMID:22988020
Chromosome substitution strains: gene discovery, functional analysis, and systems studies. PMID:22961226
Association studies in outbred mice in a new era of full-genome sequencing. PMID:22847376
The search for longevity and healthy aging genes: insights from epidemiological studies and samples of long-lived individuals. PMID:22499766
The genome architecture of the Collaborative Cross mouse genetic reference population. PMID:22345608
Forward genetic approaches to understanding complex behaviors. PMID:22297575
Mouse Phenome Database (MPD). PMID:22102583
Changes in behaviors of male C57BL/6J mice across adult life span and effects of dietary restriction. PMID:21989972
Genetic control of susceptibility to infection with Plasmodium chabaudi chabaudi AS in inbred mouse strains. PMID:21975430
An ontology-based comparative anatomy information system. PMID:21146377
Systems genetics, bioinformatics and eQTL mapping. PMID:20811929
Mapping quantitative traits and strategies to find quantitative trait genes. PMID:20643209
Colloquium papers: Numbering the hairs on our heads: the shared challenge and promise of phenomics. PMID:19858477
Replication and narrowing of gene expression quantitative trait loci using inbred mice. PMID:19609828
Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet. PMID:19450891
Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling. PMID:19434078
Mouse population-guided resequencing reveals that variants in CD44 contribute to acetaminophen-induced liver injury in humans. PMID:19416960
The expanding role of mouse genetics for understanding human biology and disease. PMID:19048054
Progress in genetic studies of pain and analgesia. PMID:18834308
Quantification of brain maturation and growth patterns in C57BL/6J mice via computational neuroanatomy of diffusion tensor images. PMID:18653668
Segmental trisomy of mouse chromosome 17: introducing an alternative model of Down's syndrome. PMID:18629032
Genetic influence on immune phenotype revealed strain-specific variations in peripheral blood lineages. PMID:18544662
Mouse cognition-related behavior in the open-field: emergence of places of attraction. PMID:18463701
Mouse consomic strains: exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies. PMID:18256238
Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits. PMID:18256237
Genomewide analysis of secretory activation in mouse models. PMID:17994195
The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics. PMID:17674098
Generation of ENU-induced mouse mutants with hypocholesterolemia: novel tools for dissecting plasma lipoprotein homeostasis. PMID:17554576
MPHASYS: a mouse phenotype analysis system. PMID:17553167
Expression profiling of the mouse early embryo: reflections and perspectives. PMID:16739220
Genotype-specific environmental impact on the variance of blood values in inbred and F1 hybrid mice. PMID:16465589
Spatiotemporal maturation patterns of murine brain quantified by diffusion tensor MRI and deformation-based morphometry. PMID:15860588
Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis. PMID:15574823
Klotho gene variation and expression in 20 inbred mouse strains. PMID:15520879
Genetic correlates of gene expression in recombinant inbred strains: a relational model system to explore neurobehavioral phenotypes. PMID:15043220
Moving forward with chemical mutagenesis in the mouse. PMID:14678486
Pleiotropy, homeostasis, and functional networks based on assays of cardiovascular traits in genetically randomized populations. PMID:12952877
Food intake, water intake, and drinking spout side preference of 28 mouse strains. PMID:12467341
Conserved codon composition of ribosomal protein coding genes in Escherichia coli, Mycobacterium tuberculosis and Saccharomyces cerevisiae: lessons from supervised machine learning in functional genomics. PMID:12034849
Molecular cloning, genomic organization, genetic variations, and characterization of murine sterolin genes Abcg5 and Abcg8. PMID:11907139
A prescription to resist proscriptions for murine models of depression. PMID:11271414
Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database. PMID:11125059 -
The Mouse Phenome Project
PubMed citations: 58.
58 articles citing: The Mouse Phenome Project
A New Polygenic Model for Nonfamilial Colorectal Cancer Inheritance Based on the Genetic Architecture of the Azoxymethane-Induced Mouse Model. PMID:31879319
Fine-Sampled Photographic Quantitation of Dermal Wound Healing Senescence in Aged BALB/cByJ Mice and Therapeutic Intervention with Fibroblast Growth Factor-1. PMID:31741752
Characterization of immune cell subtypes in three commonly used mouse strains reveals gender and strain-specific variations. PMID:30353130
Laboratory diagnostics of murine blood for detection of mouse cytomegalovirus (MCMV)-induced hepatitis. PMID:30287927
Buprenorphine Depresses Respiratory Variability in Obese Mice with Altered Leptin Signaling. PMID:29394163
Extensive Homeostatic T Cell Phenotypic Variation within the Collaborative Cross. PMID:29166619
Mouse strain differences in punished ethanol self-administration. PMID:27814928
Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice. PMID:27788253
Body Composition QTLs Identified in Intercross Populations Are Reproducible in Consomic Mouse Strains. PMID:26551037
Immune cell-based screening assay for response to anticancer agents: applications in pharmacogenomics. PMID:25897258
Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. PMID:25267973
Making organisms model human behavior: situated models in North-American alcohol research, since 1950. PMID:25233743
A cellular genetics approach identifies gene-drug interactions and pinpoints drug toxicity pathway nodes. PMID:25221565
A systems biology approach utilizing a mouse diversity panel identifies genetic differences influencing isoniazid-induced microvesicular steatosis. PMID:24848797
Strains and stressors: an analysis of touchscreen learning in genetically diverse mouse strains. PMID:24586288
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. PMID:24131519
QTL analysis of dietary obesity in C57BL/6byj X 129P3/J F2 mice: diet- and sex-dependent effects. PMID:23922663
Phenomics of cardiac chloride channels. PMID:23720326
Influence of internalin A murinisation on host resistance to orally acquired listeriosis in mice. PMID:23617550
Dissection of a quantitative trait locus for PR interval duration identifies Tnni3k as a novel modulator of cardiac conduction. PMID:23236294
Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans. PMID:22991088
A mouse diversity panel approach reveals the potential for clinical kidney injury due to DB289 not predicted by classical rodent models. PMID:22940726
Association studies in outbred mice in a new era of full-genome sequencing. PMID:22847376
Genome-wide association mapping of loci for antipsychotic-induced extrapyramidal symptoms in mice. PMID:22207321
The mouse genetics toolkit: revealing function and mechanism. PMID:21722353
Reverse translational bioinformatics: a bioinformatics assay of age, gender and clinical biomarkers. PMID:21347121
Fluoride's effects on the formation of teeth and bones, and the influence of genetics. PMID:20929720
Using expression genetics to study the neurobiology of ethanol and alcoholism. PMID:20813241
Fine-mapping of muscle weight QTL in LG/J and SM/J intercrosses. PMID:20627939
Genome wide analysis of inbred mouse lines identifies a locus containing Ppar-gamma as contributing to enhanced malaria survival. PMID:20531941
Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. PMID:19649761
Next-generation sequencing of vertebrate experimental organisms. PMID:19452216
Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling. PMID:19434078
Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel. PMID:19420014
Mouse population-guided resequencing reveals that variants in CD44 contribute to acetaminophen-induced liver injury in humans. PMID:19416960
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. PMID:19270704
Evaluation of animal models of neurobehavioral disorders. PMID:19243583
The expanding role of mouse genetics for understanding human biology and disease. PMID:19048054
Animal models of gene-nutrient interactions. PMID:19037208
Motor impairment: a new ethanol withdrawal phenotype in mice. PMID:18690115
Criteria for validating mouse models of psychiatric diseases. PMID:18484083
Social approach and repetitive behavior in eleven inbred mouse strains. PMID:18440079
Gene characterization index: assessing the depth of gene annotation. PMID:18213364
Genetic loci affecting body weight and fatness in a C57BL/6J x PWK/PhJ mouse intercross. PMID:18008102
Genomewide analysis of secretory activation in mouse models. PMID:17994195
Enhanced thymic selection of FoxP3+ regulatory T cells in the NOD mouse model of autoimmune diabetes. PMID:17991775
Phenostat: visualization and statistical tool for analysis of phenotyping data. PMID:17674099
The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics. PMID:17674098
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources. PMID:17436037
Genomewide association analysis in diverse inbred mice: power and population structure. PMID:17409088
Prospects for association mapping in classical inbred mouse strains. PMID:17277361
Computational approaches to phenotyping: high-throughput phenomics. PMID:17202287
AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. PMID:17135205
Large-scale gene expression differences across brain regions and inbred strains correlate with a behavioral phenotype. PMID:16980393
Mouse behavioral tasks relevant to autism: phenotypes of 10 inbred strains. PMID:16971002
Understanding mammalian genetic systems: the challenge of phenotyping in the mouse. PMID:16933996
Variations of eye size parameters among different strains of mice. PMID:16897341
Combined application of behavior genetics and microarray analysis to identify regional expression themes and gene-behavior associations. PMID:16707780 -
Mouse phenome database
PubMed citations: 48.
48 articles citing: Mouse phenome database
Roles of Nicotinamide N-Methyltransferase in Obesity and Type 2 Diabetes. PMID:34368359
A comprehensive phenotypic characterization of a whole-body Wdr45 knock-out mouse. PMID:34043061
Vitamin D3 receptor polymorphisms regulate T cells and T cell-dependent inflammatory diseases. PMID:32958661
MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment. PMID:31825307
Unraveling the genetic architecture of copy number variants associated with schizophrenia and other neuropsychiatric disorders. PMID:27859486
Natural genetic variation profoundly regulates gene expression in immune cells and dictates susceptibility to CNS autoimmunity. PMID:27653816
Whole-Organism Cellular Pathology: A Systems Approach to Phenomics. PMID:27503355
Bleeding the laboratory mouse: Not all methods are equal. PMID:26644183
Variable phenotypic expressivity in inbred retinal degeneration mouse lines: A comparative study of C3H/HeOu and FVB/N rd1 mice. PMID:26283863
Nicotinamide N-methyltransferase knockdown protects against diet-induced obesity. PMID:24717514
Transcriptome analysis of distinct mouse strains reveals kinesin light chain-1 splicing as an amyloid-β accumulation modifier. PMID:24497505
Genetic background influences adaptation to cardiac hypertrophy and Ca(2+) handling gene expression. PMID:23508205
Potential translational targets revealed by linking mouse grooming behavioral phenotypes to gene expression using public databases. PMID:23123364
Genome-wide association studies in mice. PMID:23044826
Chromosome substitution strains: gene discovery, functional analysis, and systems studies. PMID:22961226
Mouse models of polyglutamine diseases: review and data table. Part I. PMID:22956270
Mapping genetic variants associated with beta-adrenergic responses in inbred mice. PMID:22859963
Association studies in outbred mice in a new era of full-genome sequencing. PMID:22847376
Integrated computational and experimental analysis of the neuroendocrine transcriptome in genetic hypertension identifies novel control points for the cardiometabolic syndrome. PMID:22670052
Dissection of complex adult traits in a mouse synthetic population. PMID:22588897
Behavioral actions of alcohol: phenotypic relations from multivariate analysis of mutant mouse data. PMID:22405477
Treatment- and population-dependent activity patterns of behavioral and expression QTLs. PMID:22359631
Catalog of microRNA seed polymorphisms in vertebrates. PMID:22303453
Sleep and obesity: a focus on animal models. PMID:22266350
Mouse Phenome Database (MPD). PMID:22102583
Rare coding variants in ALPL are associated with low serum alkaline phosphatase and low bone mineral density. PMID:21956185
Identification of fat4 and tsc22d1 as novel candidate genes for spontaneous pulmonary adenomas. PMID:21764761
Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection. PMID:21493779
Architecture of energy balance traits in emerging lines of the Collaborative Cross. PMID:21427413
Mice as a mammalian model for research on the genetics of aging. PMID:21411853
The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data. PMID:21282667
Phenotypic characterization of a genetically diverse panel of mice for behavioral despair and anxiety. PMID:21206921
Neurocognitive phenotypes and genetic dissection of disorders of brain and behavior. PMID:20955930
Fluoride's effects on the formation of teeth and bones, and the influence of genetics. PMID:20929720
Toxicogenetics: population-based testing of drug and chemical safety in mouse models. PMID:20704464
Transcriptional profiles of leukocyte populations provide a tool for interpreting gene expression patterns associated with high fat diet in mice. PMID:20686622
CGDSNPdb: a database resource for error-checked and imputed mouse SNPs. PMID:20624716
Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. PMID:20439770
Selection of extreme phenotypes: the role of clinical observation in translational research. PMID:20231122
Congenic and bioinformatics analyses resolved a major-effect Fob3b QTL on mouse Chr 15 into two closely linked loci. PMID:20204375
Metabolic syndrome components in murine models. PMID:20088816
GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis. PMID:20053839
Colloquium papers: Numbering the hairs on our heads: the shared challenge and promise of phenomics. PMID:19858477
Identification of a cardiac disease modifier gene using forward genetics in the mouse. PMID:19763163
Cardiovascular response to beta-adrenergic blockade or activation in 23 inbred mouse strains. PMID:19672458
Copy number variation influences gene expression and metabolic traits in mice. PMID:19648292
Variation in genomic recombination rates among heterogeneous stock mice. PMID:19535547
Lineage-specific biology revealed by a finished genome assembly of the mouse. PMID:19468303 -
A collaborative database of inbred mouse strain characteristics
PubMed citations: 40.
40 articles citing: A collaborative database of inbred mouse strain characteristics
Effects of Alzheimer's disease of varying severity on cardiac and autonomic function. PMID:35019033
Supplier-origin mouse microbiomes significantly influence locomotor and anxiety-related behavior, body morphology, and metabolism. PMID:34112927
Mapping the living mouse brain neural architecture: strain-specific patterns of brain structural and functional connectivity. PMID:33635426
Characterization of immune cell subtypes in three commonly used mouse strains reveals gender and strain-specific variations. PMID:30353130
Strain-specific differential expression of astrocytes and microglia in the mouse hippocampus. PMID:29761014
Reproducibility and replicability of rodent phenotyping in preclinical studies. PMID:29357292
Extensive Homeostatic T Cell Phenotypic Variation within the Collaborative Cross. PMID:29166619
Whole exome sequencing of wild-derived inbred strains of mice improves power to link phenotype and genotype. PMID:28819774
Nonalcoholic Steatohepatitis: A Search for Factual Animal Models. PMID:26064924
Trps1 differentially modulates the bone mineral density between male and female mice and its polymorphism associates with BMD differently between women and men. PMID:24416236
Measuring behavior of animal models: faults and remedies. PMID:23223171
The mouse as a model for understanding chronic diseases of aging: the histopathologic basis of aging in inbred mice. PMID:22953031
Phenotypic characterization of a genetically diverse panel of mice for behavioral despair and anxiety. PMID:21206921
Development of electrocardiogram intervals during growth of FVB/N neonate mice. PMID:20735846
The complexity of alcohol drinking: studies in rodent genetic models. PMID:20552264
Effects of a high fat diet on liver mitochondria: increased ATP-sensitive K+ channel activity and reactive oxygen species generation. PMID:20373005
Genomewide association analysis of respiratory syncytial virus infection in mice. PMID:20015999
Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. PMID:19649761
In silico whole genome association scan for murine prepulse inhibition. PMID:19370154
Gene expression profiles and breast cancer metastasis: a genetic perspective. PMID:19347591
Mouse phenome database. PMID:18987003
Genetic correlates of morphine withdrawal in 14 inbred mouse strains. PMID:18774238
Multivariate analyses reveal common and drug-specific genetic influences on responses to four drugs of abuse. PMID:18774184
Voluntary ethanol consumption in 22 inbred mouse strains. PMID:18358676
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources. PMID:17436037
Prospects for association mapping in classical inbred mouse strains. PMID:17277361
Mouse Phenome Database (MPD). PMID:17151079
Mouse Tumor Biology Database (MTB): status update and future directions. PMID:17135195
Stability of inbred mouse strain differences in behavior and brain size between laboratories and across decades. PMID:17053075
Understanding mammalian genetic systems: the challenge of phenotyping in the mouse. PMID:16933996
Variations of eye size parameters among different strains of mice. PMID:16897341
Combined application of behavior genetics and microarray analysis to identify regional expression themes and gene-behavior associations. PMID:16707780
Comparative analysis of haplotype association mapping algorithms. PMID:16466585
A protocol for high-throughput phenotyping, suitable for quantitative trait analysis in mice. PMID:16465593
Mouse models in non-alcoholic fatty liver disease and steatohepatitis research. PMID:16436109
A catalog of nonsynonymous polymorphism on mouse chromosome 16. PMID:16341672
Hybrid C57BL/6J x FVB/NJ mice drink more alcohol than do C57BL/6J mice. PMID:16340451
Variation in IL-1beta gene expression is a major determinant of genetic differences in arthritis aggressivity in mice. PMID:16113081
Variation in the cortical area map of C57BL/6J and DBA/2J inbred mice predicts strain identity. PMID:15774010
Genotype-environment interactions in mouse behavior: a way out of the problem. PMID:15764701 -
Mouse Phenome Database (MPD)
PubMed citations: 32.
32 articles citing: Mouse Phenome Database (MPD)
Alpha-ketoglutarate ameliorates age-related osteoporosis via regulating histone methylations. PMID:33154378
Reduced Chronic Toxicity and Carcinogenicity in A/J Mice in Response to Life-Time Exposure to Aerosol From a Heated Tobacco Product Compared With Cigarette Smoke. PMID:32780830
Reproducibility and replicability of rodent phenotyping in preclinical studies. PMID:29357292
Susceptibility of different mouse strains to peri-implantitis. PMID:29044525
Does age matter? The impact of rodent age on study outcomes. PMID:27307423
Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection. PMID:26510153
Association of brain immune genes with social behavior of inbred mouse strains. PMID:25895500
Now you see me, now you don't: the interaction of Salmonella with innate immune receptors. PMID:25749454
Antigen specificity can be irrelevant to immunocytokine efficacy and biodistribution. PMID:25733854
Association of Nrf2 polymorphism haplotypes with acute lung injury phenotypes in inbred strains of mice. PMID:25268541
Ligature-induced peri-implantitis in mice. PMID:25244403
Mapping Novel Subcutaneous Angiogenesis Quantitative Trait Loci in [B6×MRL]F2 Mice. PMID:25207199
Discovering novel neuroactive drugs through high-throughput behavior-based chemical screening in the zebrafish. PMID:25104936
Discovery and refinement of muscle weight QTLs in B6 × D2 advanced intercross mice. PMID:24963006
Integrating EMR-linked and in vivo functional genetic data to identify new genotype-phenotype associations. PMID:24949630
Inbred mouse strains reveal biomarkers that are pro-longevity, antilongevity or role switching. PMID:24862908
Copy number variation in schizophrenia in Sweden. PMID:24776740
Methodological considerations for measuring spontaneous physical activity in rodents. PMID:24598463
Long-term nonsense suppression therapy moderates MPS I-H disease progression. PMID:24411223
Biobanking across the phenome - at the center of chronic disease research. PMID:24274136
Mouse phenome database. PMID:24243846
Genetics of adverse reactions to haloperidol in a mouse diallel: a drug-placebo experiment and Bayesian causal analysis. PMID:24240528
Pheno-Pub: a total support system for the publication of mouse phenotypic data on the web. PMID:24220852
Rare-disease genetics in the era of next-generation sequencing: discovery to translation. PMID:23999272
Genomic structure and variation of nuclear factor (erythroid-derived 2)-like 2. PMID:23936606
The relevance of mouse models for investigating age-related bone loss in humans. PMID:23689830
Targeted ANP32E mutant mice do not demonstrate obvious movement defects. PMID:23675506
Methionine-restricted C57BL/6J mice are resistant to diet-induced obesity and insulin resistance but have low bone density. PMID:23236485
Biological databases for behavioral neurobiology. PMID:23195119
Imputation of exome sequence variants into population- based samples and blood-cell-trait-associated loci in African Americans: NHLBI GO Exome Sequencing Project. PMID:23103231
Association studies in outbred mice in a new era of full-genome sequencing. PMID:22847376
Behavioral barcoding in the cloud: embracing data-intensive digital phenotyping in neuropharmacology. PMID:22652049
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Tags
More detailed information about this field from each metasource.
dna structural variation
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
indel
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
blood
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
bone
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
brain
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cancer
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cardiovascular
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cell
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
endocrine
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
genetic
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
immune system
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
muscle
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
nervous system
metasource: re3data.org
version: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
phenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
medical informatics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.506449
Tags
More detailed information about this field from each metasource.
dna structural variation
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
indel
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: MPD; Mouse Phenome Database; DOI: https://doi.org/10.25504/FAIRsharing.h6enr1; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
blood
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
bone
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
brain
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cancer
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cardiovascular
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
cell
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
endocrine
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
genetic
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
immune system
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
muscle
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
nervous system
metasource: re3data.orgversion: re3data.org: Mouse Phenome Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3T61P last accessed: 2022-11-04
phenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
medical informatics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:59.506449
dna structural variation gene expression polymorphism genotype indel phenotype single nucleotide polymorphism structure human and other vertebrate genomes model organisms blood bone brain cancer cardiovascular cell endocrine genetic immune system muscle nervous system phenomics genotype and phenotype medical informatics pathology
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