Minimum Information About a Simulation Experiment
Names
More detailed information about this field from each metasource.
Minimum Information About a Simulation Experiment
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MIASE
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information About a Simulation Experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MIASE
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information About a Simulation Experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MIASE
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
This source may no longer be available. No known URL could be resolved successfully.
The MIASE Guidelines, initiated by the BioModels.net effort, are a community effort to identify the Minimal Information About a Simulation Experiment, necessary to enable the reproducible simulation experiments. Consequently, the MIASE Guidelines list the information that a modeller needs to provide to enable the execution and reproduction of a numerical simulation experiment, derived from a given set of quantitative models. MIASE is a set of guidelines suitable for use with any structured format for simulation experiments. As such, MIASE is designed to help modelers and software tools to exchange their simulation settings and to foster collaboration.
Description
More detailed information about this field from each metasource.
The MIASE Guidelines, initiated by the BioModels.net effort, are a community effort to identify the Minimal Information About a Simulation Experiment, necessary to enable the reproducible simulation experiments. Consequently, the MIASE Guidelines list the information that a modeller needs to provide to enable the execution and reproduction of a numerical simulation experiment, derived from a given set of quantitative models. MIASE is a set of guidelines suitable for use with any structured format for simulation experiments. As such, MIASE is designed to help modelers and software tools to exchange their simulation settings and to foster collaboration.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://co.mbine.org/standards/miaseWebpage
More detailed information about this field from each metasource.
http://co.mbine.org/standards/miase
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Minimum Information About a Simulation Experiment (MIASE)
PMID: 21552546
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
Minimum Information About a Simulation Experiment (MIASE)
PMID: 21552546
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
-
Minimum Information About a Simulation Experiment (MIASE)
PubMed citations: 42.
42 articles citing: Minimum Information About a Simulation Experiment (MIASE)
An ECHO of Cartilage: In Silico Prediction of Combinatorial Treatments to Switch Between Transient and Permanent Cartilage Phenotypes With Ex Vivo Validation. PMID:34869253
Relating simulation studies by provenance-Developing a family of Wnt signaling models. PMID:34351901
Preliminary Minimum Reporting Requirements for In-Vivo Neural Interface Research: I. Implantable Neural Interfaces. PMID:33997788
A brief guide to the science and art of writing manuscripts in biomedicine. PMID:33167977
Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data. PMID:33076428
Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine. PMID:32954378
Best Practices for Making Reproducible Biochemical Models. PMID:32853539
Community standards to facilitate development and address challenges in metabolic modeling. PMID:32845080
Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices. PMID:31602618
A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows. PMID:30849072
Web-Based Interfaces for Virtual C. elegans Neuron Model Definition, Network Configuration, Behavioral Experiment Definition and Experiment Results Visualization. PMID:30483089
Reproducible Research Using Biomodels. PMID:30191472
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks. PMID:29971009
Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures. PMID:29765315
A systematic review of the quality of reporting of simulation studies about methods for the analysis of complex longitudinal patient-reported outcomes data. PMID:29679367
Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability. PMID:28270761
Harnessing Big Data for Systems Pharmacology. PMID:27814027
Where next for the reproducibility agenda in computational biology? PMID:27422148
GESDB: a platform of simulation resources for genetic epidemiology studies. PMID:27242038
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845
The Cardiac Electrophysiology Web Lab. PMID:26789753
The evolution of standards and data management practices in systems biology. PMID:26700851
Databases for multilevel biophysiology research available at Physiome.jp. PMID:26441671
The role of markup for enabling interoperability in health informatics. PMID:26042043
Combining computational models, semantic annotations and simulation experiments in a graph database. PMID:25754863
Quantitative and logic modelling of molecular and gene networks. PMID:25645874
Improving collaboration by standardization efforts in systems biology. PMID:25538939
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. PMID:25494900
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions. PMID:25231498
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems. PMID:25115331
A framework for different levels of integration of computational models into web-based virtual patients. PMID:24463466
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. PMID:24321545
Toward an integrated software platform for systems pharmacology. PMID:24150748
Function of dynamic models in systems biology: linking structure to behaviour. PMID:24103739
The systems biology simulation core algorithm. PMID:23826941
Chaste: an open source C++ library for computational physiology and biology. PMID:23516352
LibKiSAO: a Java library for Querying KiSAO. PMID:23006857
An improved protocol for sequencing of repetitive genomic regions and structural variations using mutagenesis and next generation sequencing. PMID:22912860
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. PMID:22833495
Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language. PMID:22172142
Software for systems biology: from tools to integrated platforms. PMID:22048662
Integrating systems biology models and biomedical ontologies. PMID:21835028
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
chemical entity
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
enzymatic reaction
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
mathematical model
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
modeling and simulation
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
chemical entity
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
enzymatic reaction
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
mathematical model
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
modeling and simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: MIASE; Minimum Information About a Simulation Experiment; DOI: https://doi.org/10.25504/FAIRsharing.zj6y9h; Last edited: March 12, 2020, 4:22 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
chemical entity enzymatic reaction mathematical model modeling and simulation pathway model protein
Need help integrating and/or managing biomedical data?