Tag: life cycle stage

The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological structure of the mouse, but also to provide a framework into which informatio ...

The e-Mouse Atlas of Gene Expression (EMAGE) is a freely available database of in situ gene expression patterns that allows users to perform online queries of mouse developmental gene expression. EMAGE is unique in providing both text-based descripti ...

An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to main ...

A structured controlled vocabulary of stage-specific anatomical structures of the mouse used within the e-Mouse Atlas Project.

This is a community-curated controlled vocabulary for soybean field growth stages (Soybean Whole Plant Growth Ontology), plant structure names (Soybean Structure Ontology), development (Soybean Development Ontology) and plant traits (Soybean Trait On ...

Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, spatial gene expression, protein annotation), of the cell (cell shapes, fate, lineage) or of the whole em ...

Proteomics database for streptomyces and caulobacter and neisseria. Unique database in the field, containing knowledge based data of time series of protein expression for various stages of development of the given species.

The Xenopus Anatomical Ontology (XAO) describes Xenopus anatomy and embryological development using a 'controlled vocabulary' of anatomy terms that are organized in an hierarchy with a graphical structure. XAO terms describe gene expression, and the ...

The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental tables.

A structured controlled vocabulary of the anatomy and development of the Zebrafish. If you work on the project responsible for "Zebrafish anatomy and development" then please consider helping us by claiming this record and updating it appropriately.

vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense o ...

The Botryllus schlosseri Ontology of Development and Anatomy (BODA) is the first ontology describing the anatomy and the development of Botryllus schlosseri. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this ...

The Flora Phenotype Ontology is a domain ontology for the description of plant characters. FLOPO contains more than 25000 phenotype and traits classes, the creation of FLOPO is data-driven: For each trait/phenotype class exists a taxon annotation in ...

The EHDAA2 ontology is a human developmental anatomy covering the first 49 days [Carnegie stages (CS)1–20], primarily structured around the parts of organ systems and their development. The ontology includes more than 2000 anatomical entities (AEs) t ...

This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.

OPL models the life cycle stage details of T.cruzi and two related kinetoplastids, Trypanosoma brucei and Leishmania major. In addition, the ontology also models necessary contextual details such as host information, vector information, strain and an ...

An ontology of the developmental stages of Drosophila melanogaster. It provides a controlled vocabulary for use in annotation and classification of data related to Drosophila, such as gene expression, phenotypes and images.

Life cycle stages for Platynereis dumerilii. The status of this resource is "in development", confirmed via developer remarks within the GitHub project stating that the ontology is not ready.

The ontology of the amphioxus anatomy and life cycle is the first ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).

Life cycle stages for Medaka. OlatDv is based on the original medaka stage ontology MFO by Thorsten Henrich. Currently it includes only pre-adult stages.

A structured controlled vocabulary of the development of Caenorhabditis elegans. This resource is also referred to as the Life Stage ontology on the wormbase database.

Ascomycete Phenotype Ontology is a structured controlled vocabulary for the phenotypes of Ascomycete fungi.

The Banana Breeding Tracker Database (BBTbase) is a database of banana breeding information and allows users to input data from multiple stages in banana crop production, including hybridization, seed extraction, culturing, and hardening. This databa ...