Drosophila anatomy ontology
Names
More detailed information about this field from each metasource.
Drosophila anatomy ontology
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
FBbt
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Drosophila Gross Anatomy Ontology
metasource: Biontology / Bioportal
version: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
FB-BT
metasource: Biontology / Bioportal
version: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
Names
More detailed information about this field from each metasource.
Drosophila anatomy ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
FBbt
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Drosophila Gross Anatomy Ontology
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
FB-BT
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
Other names: FBbt, Drosophila Gross Anatomy Ontology, FB-BT
Names
More detailed information about this field from each metasource.
Drosophila anatomy ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
FBbt
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Drosophila Gross Anatomy Ontology
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
FB-BT
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to maintain it and use it for curation.
Description
More detailed information about this field from each metasource.
An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to maintain it and use it for curation.
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
An ontology representing the gross anatomy of Drosophila melanogaster
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
Webpage:
http://purl.obolibrary.org/obo/fbbtWebpage
More detailed information about this field from each metasource.
http://purl.obolibrary.org/obo/fbbt
metasource: Biontology / Bioportalversion: fbbt/releases/2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FB-BT
http://flybase.org/vocabularies
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
FlyBase: anatomical data, images and queries
PMID: 16381917
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Virtual Fly Brain browser and query interface
PMID: 22180411
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Drosophila anatomy ontology
PMID: 24139062
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
A strategy for building neuroanatomy ontologies
PMID: 22402613
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
FlyBase: anatomical data, images and queries
PMID: 16381917
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Virtual Fly Brain browser and query interface
PMID: 22180411
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Drosophila anatomy ontology
PMID: 24139062
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
A strategy for building neuroanatomy ontologies
PMID: 22402613
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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FlyBase: anatomical data, images and queries
PubMed citations: 116.
116 articles citing: FlyBase: anatomical data, images and queries
Phenylbutyrate modulates polyamine acetylase and ameliorates Snyder-Robinson syndrome in a Drosophila model and patient cells. PMID:35801587
Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila. PMID:33735180
Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila. PMID:33713129
Organizing phenotypic data-a semantic data model for anatomy. PMID:31221226
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
The canonical Wingless signaling pathway is required but not sufficient for inflow tract formation in the Drosophila melanogaster heart. PMID:26983369
Ontology application and use at the ENCODE DCC. PMID:25776021
Gene-specific cell labeling using MiMIC transposons. PMID:25712101
The myogenic repressor gene Holes in muscles is a direct transcriptional target of Twist and Tinman in the Drosophila embryonic mesoderm. PMID:25704510
An ontology for microbial phenotypes. PMID:25433798
iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. PMID:25378303
BuT2 is a member of the third major group of hAT transposons and is involved in horizontal transfer events in the genus Drosophila. PMID:24459285
Image-level and group-level models for Drosophila gene expression pattern annotation. PMID:24299119
The Drosophila anatomy ontology. PMID:24139062
The Drosophila phenotype ontology. PMID:24138933
Viruses and antiviral immunity in Drosophila. PMID:23680639
Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis. PMID:23560912
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Mar, a MITE family of hAT transposons in Drosophila. PMID:22935191
Computational models for mechanics of morphogenesis. PMID:22692887
Joint stage recognition and anatomical annotation of Drosophila gene expression patterns. PMID:22689756
Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval. PMID:22621237
New Drosophila P-like elements and reclassification of Drosophila P-elements subfamilies. PMID:22610468
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay. PMID:22248237
Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence. PMID:21960044
A comparative gene expression database for invertebrates. PMID:21861937
In silico characterization of the neural alpha tubulin gene promoter of the sea urchin embryo Paracentrotus lividus by phylogenetic footprinting. PMID:21678058
Identifying relevant data for a biological database: handcrafted rules versus machine learning. PMID:21393656
Automatically identifying and annotating mouse embryo gene expression patterns. PMID:21357576
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
A gross anatomy ontology for hymenoptera. PMID:21209921
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
BrainTrap: a database of 3D protein expression patterns in the Drosophila brain. PMID:20624714
Transgene rescue identifies an essential function for Drosophila beta spectrin in the nervous system and a selective requirement for ankyrin-2-binding activity. PMID:20573981
The Drosophila Anion Exchanger (DAE) lacks a detectable interaction with the spectrin cytoskeleton. PMID:20573195
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. PMID:20519284
Semantic integration of data on transcriptional regulation. PMID:20427517
Hosimary: a new hAT transposon group involved in horizontal transfer. PMID:20339871
Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen. PMID:20144944
Integrating phenotype ontologies across multiple species. PMID:20064205
Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology. PMID:19921742
The Gene Wiki: community intelligence applied to human gene annotation. PMID:19755503
Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species. PMID:19585148
Cell rearrangements, cell divisions and cell death in a migrating epithelial sheet in the abdomen of Drosophila. PMID:19542353
Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics. PMID:19429919
An improved ontological representation of dendritic cells as a paradigm for all cell types. PMID:19243617
Tolerance in Drosophila. PMID:19180359
no poles encodes a predicted E3 ubiquitin ligase required for early embryonic development of Drosophila. PMID:19141674
Regulation of apoptosis of rbf mutant cells during Drosophila development. PMID:19100727
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. PMID:19091010
Duplication and gene conversion in the Drosophila melanogaster genome. PMID:19079581
Genome and proteome annotation: organization, interpretation and integration. PMID:19019817
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. PMID:18953041
The Protein Feature Ontology: a tool for the unification of protein feature annotations. PMID:18936051
reduced ocelli encodes the leucine rich repeat protein Pray For Elves in Drosophila melanogaster. PMID:18820435
Corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes. PMID:18802461
Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. PMID:18632750
Cardiac expression of the Drosophila Transglutaminase (CG7356) gene is directly controlled by myocyte enhancer factor-2. PMID:18627097
GMODWeb: a web framework for the Generic Model Organism Database. PMID:18570664
The proto-oncogene Int6 is essential for neddylation of Cul1 and Cul3 in Drosophila. PMID:18493598
Gene Ontology annotations: what they mean and where they come from. PMID:18460184
Genetic dissociation of ethanol sensitivity and memory formation in Drosophila melanogaster. PMID:18430923
Drosophila Uri, a PP1alpha binding protein, is essential for viability, maintenance of DNA integrity and normal transcriptional activity. PMID:18412953
Expression pattern diversity and functional conservation between retroposed PRAT genes from Drosophila melanogaster and Drosophila virilis. PMID:18392760
Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. PMID:18381818
A Drosophila gain-of-function screen for candidate genes involved in steroid-dependent neuroendocrine cell remodeling. PMID:18245346
Mutations in the Drosophila mitochondrial tRNA amidotransferase, bene/gatA, cause growth defects in mitotic and endoreplicating tissues. PMID:18245325
Functional trends in structural classes of the DNA binding domains of regulatory transcription factors. PMID:18229706
Nonadaptive explanations for signatures of partial selective sweeps in Drosophila. PMID:18199829
Direct control of the proneural gene atonal by retinal determination factors during Drosophila eye development. PMID:18083159
Investigating the genetic circuitry of mastermind in Drosophila, a notch signal effector. PMID:18073442
Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila. PMID:18073425
Phylogenetic footprinting analysis in the upstream regulatory regions of the Drosophila enhancer of split genes. PMID:18039873
Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron. PMID:18039871
Variable strength of translational selection among 12 Drosophila species. PMID:18039870
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. PMID:18039369
Gene family evolution across 12 Drosophila genomes. PMID:17997610
Computational RNomics of drosophilids. PMID:17996037
Demasculinization of X chromosomes in the Drosophila genus. PMID:17994090
Constraint and turnover in sex-biased gene expression in the genus Drosophila. PMID:17994089
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. PMID:17989258
Functional screening identifies miR-315 as a potent activator of Wingless signaling. PMID:17989227
PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells. PMID:17940529
4DXpress: a database for cross-species expression pattern comparisons. PMID:17916571
Presynaptic establishment of the synaptic cleft extracellular matrix is required for post-synaptic differentiation. PMID:17901219
Genomewide clonal analysis of lethal mutations in the Drosophila melanogaster eye: comparison of the X chromosome and autosomes. PMID:17720911
Mutation of the Apc1 homologue shattered disrupts normal eye development by disrupting G1 cell cycle arrest and progression through mitosis. PMID:17689521
Sympatric Drosophila simulans flies with distinct mtDNA show age related differences in mitochondrial metabolism. PMID:17681231
Positive selection near an inversion breakpoint on the neo-X chromosome of Drosophila americana. PMID:17660565
Global analysis of patterns of gene expression during Drosophila embryogenesis. PMID:17645804
Mapping regions within cosmopolitan inversion In(3R)Payne associated with natural variation in body size in Drosophila melanogaster. PMID:17603103
Intronic microRNA precursors that bypass Drosha processing. PMID:17589500
No influence of Indy on lifespan in Drosophila after correction for genetic and cytoplasmic background effects. PMID:17571923
DGEM--a microarray gene expression database for primary human disease tissues. PMID:17570735
A database of wing diversity in the Hawaiian Drosophila. PMID:17534437
Cardiac expression of the Drosophila Sulphonylurea receptor gene is regulated by an intron enhancer dependent upon the NK homeodomain factor Tinman. PMID:17433632
Multiple-pathway analysis of double-strand break repair mutations in Drosophila. PMID:17432935
Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting. PMID:17395715
RNAi knockdown of Nopp140 induces Minute-like phenotypes in Drosophila. PMID:17392509
PDP1epsilon functions downstream of the circadian oscillator to mediate behavioral rhythms. PMID:17344391
Functional interactions between the Moses corepressor and DHR78 nuclear receptor regulate growth in Drosophila. PMID:17322404
Exploring strategies for protein trapping in Drosophila. PMID:17179094
Identification of genes that interact with Drosophila liquid facets. PMID:17179082
The UBX-regulated network in the haltere imaginal disc of D. melanogaster. PMID:17174297
Hedgehog Signaling Pathway Database: a repository of current annotation efforts and resources for the Hh research community. PMID:17151082
Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity. PMID:17148477
Organelle DB: an updated resource of eukaryotic protein localization and function. PMID:17130152
FlyBase: genomes by the dozen. PMID:17099233
Template disruptions and failure of double Holliday junction dissolution during double-strand break repair in Drosophila BLM mutants. PMID:17075047
PhenomicDB: a new cross-species genotype/phenotype resource. PMID:16982638
dSno facilitates baboon signaling in the Drosophila brain by switching the affinity of Medea away from Mad and toward dSmad2. PMID:16951053
A Drosophila model of Barth syndrome. PMID:16855048
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. PMID:16845020
One hundred years of high-throughput Drosophila research. PMID:16821132 -
The Virtual Fly Brain browser and query interface
PubMed citations: 53.
53 articles citing: The Virtual Fly Brain browser and query interface
The neuronal logic of how internal states control food choice. PMID:35794476
An incentive circuit for memory dynamics in the mushroom body of Drosophila melanogaster. PMID:35363138
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. PMID:35239393
Cell type ontologies of the Human Cell Atlas. PMID:34750578
A unified mechanism for innate and learned visual landmark guidance in the insect central complex. PMID:34555013
A protocol to detect neurodegeneration in Drosophila melanogaster whole-brain mounts using advanced microscopy. PMID:34382016
Whole-body integration of gene expression and single-cell morphology. PMID:34380046
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Identification of Neuronal Polarity by Node-Based Machine Learning. PMID:33666823
Accelerating with FlyBrainLab the discovery of the functional logic of the Drosophila brain in the connectomic and synaptomic era. PMID:33616035
From whole-mount to single-cell spatial assessment of gene expression in 3D. PMID:33097816
The Wiring Logic of an Identified Serotonergic Neuron That Spans Sensory Networks. PMID:32641403
Dietary sugar inhibits satiation by decreasing the central processing of sweet taste. PMID:32539934
An Adult Brain Atlas Reveals Broad Neuroanatomical Changes in Independently Evolved Populations of Mexican Cavefish. PMID:31636546
A subset of brain neurons controls regurgitation in adult Drosophila melanogaster. PMID:31511344
Visualization of insect metamorphosis. PMID:31438819
Functional and anatomical specificity in a higher olfactory centre. PMID:31112127
Neurocalcin regulates nighttime sleep and arousal in Drosophila. PMID:30865587
The development and assembly of the Drosophila adult ventral nerve cord. PMID:30826502
Fast near-whole-brain imaging in adult Drosophila during responses to stimuli and behavior. PMID:30768592
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans. PMID:30201845
A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster. PMID:30033368
Insights from intoxicated Drosophila. PMID:29980341
Virtual Fly Brain - Using OWL to support the mapping and genetic dissection of the Drosophila brain. PMID:29724079
A Fly's Eye View of Natural and Drug Reward. PMID:29720947
A Genetic Toolkit for Dissecting Dopamine Circuit Function in Drosophila. PMID:29642019
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. PMID:29628885
Kaleido: Visualizing Big Brain Data with Automatic Color Assignment for Single-Neuron Images. PMID:29502301
Cell ontology in an age of data-driven cell classification. PMID:29322914
Dead simple OWL design patterns. PMID:28583177
Mapping brain structure and function: cellular resolution, global perspective. PMID:28341866
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
Dopaminergic rules of engagement for memory in Drosophila. PMID:28088703
Brain Vascular Imaging Techniques. PMID:28042833
Constraints and spandrels of interareal connectomes. PMID:27924867
Brain transcriptome atlases: a computational perspective. PMID:27909802
Comparative Neuroanatomy of the Lateral Accessory Lobe in the Insect Brain. PMID:27445837
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Genetics on the Fly: A Primer on the Drosophila Model System. PMID:26564900
My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development. PMID:26413258
Lineage-associated tracts defining the anatomy of the Drosophila first instar larval brain. PMID:26141956
Doubling up on the fly: NeuroMorpho.Org Meets Big Data. PMID:25576225
Ultrafast tissue staining with chemical tags. PMID:25157152
My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models. PMID:24936286
Controlling feeding behavior by chemical or gene-directed targeting in the brain: what's so spatial about our methods? PMID:24385950
The Drosophila anatomy ontology. PMID:24139062
The Drosophila phenotype ontology. PMID:24138933
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
The honeybee as a model for understanding the basis of cognition. PMID:23080415
Web tools for large-scale 3D biological images and atlases. PMID:22676296
Introduction to the research topic on standard brain atlases. PMID:22529782 -
The Drosophila anatomy ontology
PubMed citations: 32.
32 articles citing: The Drosophila anatomy ontology
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. PMID:35239393
Expression Atlas update: gene and protein expression in multiple species. PMID:34850121
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Annotating the Insect Regulatory Genome. PMID:34209769
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
A Systematic Nomenclature for the Drosophila Ventral Nerve Cord. PMID:32931755
Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator. PMID:32905086
Automated generation of gene summaries at the Alliance of Genome Resources. PMID:32559296
A standardized nomenclature and atlas of the male terminalia of Drosophila melanogaster. PMID:31401934
REDfly: the transcriptional regulatory element database for Drosophila. PMID:30329093
Geppetto: a reusable modular open platform for exploring neuroscience data and models. PMID:30201843
Virtual Fly Brain - Using OWL to support the mapping and genetic dissection of the Drosophila brain. PMID:29724079
Semantic biclustering for finding local, interpretable and predictive expression patterns. PMID:29513193
Cell ontology in an age of data-driven cell classification. PMID:29322914
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. PMID:29083911
Dead simple OWL design patterns. PMID:28583177
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. PMID:28535296
Exploring FlyBase Data Using QuickSearch. PMID:27930807
FlyBase at 25: looking to the future. PMID:27799470
Using FlyBase, a Database of Drosophila Genes and Genomes. PMID:27730573
Comparative Neuroanatomy of the Lateral Accessory Lobe in the Insect Brain. PMID:27445837
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development. PMID:26413258
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Identifying transcriptional cis-regulatory modules in animal genomes. PMID:25704908
The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. PMID:25276334
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models. PMID:24936286
The Drosophila phenotype ontology. PMID:24138933 -
A strategy for building neuroanatomy ontologies
PubMed citations: 17.
17 articles citing: A strategy for building neuroanatomy ontologies
An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphology. PMID:32219575
The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. PMID:30930166
A Single-Cell Level and Connectome-Derived Computational Model of the Drosophila Brain. PMID:30687056
Mapping Molecular Datasets Back to the Brain Regions They are Extracted from: Remembering the Native Countries of Hypothalamic Expatriates and Refugees. PMID:30334222
Virtual Fly Brain - Using OWL to support the mapping and genetic dissection of the Drosophila brain. PMID:29724079
Cell ontology in an age of data-driven cell classification. PMID:29322914
Comparison of RNAi NgR and NEP1-40 in Acting on Axonal Regeneration After Spinal Cord Injury in Rat Models. PMID:27921243
Toward Whole-Body Connectomics. PMID:27911739
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models. PMID:24936286
The Drosophila anatomy ontology. PMID:24139062
The Drosophila phenotype ontology. PMID:24138933
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
ConnectomeExplorer: query-guided visual analysis of large volumetric neuroscience data. PMID:24051854
TrOn: an anatomical ontology for the beetle Tribolium castaneum. PMID:23936240
Tags:
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
image
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
image
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
gene expression life cycle stage phenotype
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