e-Mouse Atlas Project Anatomy Ontology
Names
More detailed information about this field from each metasource.
e-Mouse Atlas Project Anatomy Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
EMAP
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Mouse Gross Anatomy and Development Ontology
metasource: Biontology / Bioportal
version: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Names
More detailed information about this field from each metasource.
e-Mouse Atlas Project Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
EMAP
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Mouse Gross Anatomy and Development Ontology
metasource: Biontology / Bioportalversion: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Other names: EMAP, Mouse Gross Anatomy and Development Ontology
Names
More detailed information about this field from each metasource.
e-Mouse Atlas Project Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
EMAP
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Mouse Gross Anatomy and Development Ontology
metasource: Biontology / Bioportalversion: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
A structured controlled vocabulary of stage-specific anatomical structures of the mouse used within the e-Mouse Atlas Project.
Description
More detailed information about this field from each metasource.
A structured controlled vocabulary of stage-specific anatomical structures of the mouse used within the e-Mouse Atlas Project.
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).
metasource: Biontology / Bioportalversion: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Webpage:
http://www.emouseatlas.org/emap/ema/home.phpWebpage
More detailed information about this field from each metasource.
http://www.emouseatlas.org/emap/ema/home.php
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://emouseatlas.org/
metasource: Biontology / Bioportalversion: unknown extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/EMAP
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
PMID: 9651497
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
PMID: 23972281
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data
PMID: 26208972
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Formalization of mouse embryo anatomy
PMID: 14734318
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
PMID: 9651497
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
PMID: 23972281
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data
PMID: 26208972
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Formalization of mouse embryo anatomy
PMID: 14734318
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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EMAGE mouse embryo spatial gene expression database: 2014 update
PubMed citations: 65.
65 articles citing: EMAGE mouse embryo spatial gene expression database: 2014 update
Hinge point emergence in mammalian spinal neurulation. PMID:35561223
Epilepsy in Pregnancy-Management Principles and Focus on Valproate. PMID:35163292
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms. PMID:34900995
Liver and brain differential expression of one-carbon metabolism genes during ontogenesis. PMID:34702858
Genetic predisposition to tinnitus in the UK Biobank population. PMID:34518561
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis. PMID:34489600
Loss of CC2D1A in Glutamatergic Neurons Results in Autistic-Like Features in Mice. PMID:34132974
A single-embryo, single-cell time-resolved model for mouse gastrulation. PMID:33932341
Cadherins in early neural development. PMID:33796894
Dysregulated BMP signaling through ACVR1 impairs digit joint development in fibrodysplasia ossificans progressiva (FOP). PMID:33217406
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. PMID:33116143
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach. PMID:32857879
Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation. PMID:32820037
GCN5 acetylation is required for craniofacial chondrocyte maturation. PMID:32446700
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids. PMID:32076263
Rabs in Signaling and Embryonic Development. PMID:32033485
The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements. PMID:31943266
Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development. PMID:31874220
Toward a Common Coordinate Framework for the Human Body. PMID:31835027
Application of Computational Biology to Decode Brain Transcriptomes. PMID:31655213
N-cadherin stabilises neural identity by dampening anti-neural signals. PMID:31601548
Skeletal muscle mitochondrial function and exercise capacity are not impaired in mice with knockout of STAT3. PMID:31513449
Molecular architecture of lineage allocation and tissue organization in early mouse embryo. PMID:31391582
Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy. PMID:31276197
EmExplorer: a database for exploring time activation of gene expression in mammalian embryos. PMID:31164042
The modular organization of the cerebral cortex: Evolutionary significance and possible links to neurodevelopmental conditions. PMID:30303529
Oncogene Delta/Notch-Like EGF-Related Receptor Promotes Cell Proliferation, Invasion, and Migration in Hepatocellular Carcinoma and Predicts a Poor Prognosis. PMID:30235011
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Ancient Origin of the CARD-Coiled Coil/Bcl10/MALT1-Like Paracaspase Signaling Complex Indicates Unknown Critical Functions. PMID:29881386
A quantitative method for staging mouse embryos based on limb morphometry. PMID:29540505
eHistology image and annotation data from the Kaufman Atlas of Mouse Development. PMID:29272399
DNER modulates the length, polarity and synaptogenesis of spiral ganglion neurons via the Notch signaling pathway. PMID:29207144
A molecular roadmap of the AGM region reveals BMPER as a novel regulator of HSC maturation. PMID:29093060
Sexually Dimorphic Epigenetic Regulation of Brain-Derived Neurotrophic Factor in Fetal Brain in the Valproic Acid Model of Autism Spectrum Disorder. PMID:29073621
History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability. PMID:28413340
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells. PMID:28332981
Ultrasound-guided spectral photoacoustic imaging of hemoglobin oxygenation during development. PMID:28270982
Stomach curvature is generated by left-right asymmetric gut morphogenesis. PMID:28242610
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
Scaling single-cell genomics from phenomenology to mechanism. PMID:28102262
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Brain transcriptome atlases: a computational perspective. PMID:27909802
RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. PMID:27852218
Sex and Tissue Specificity of Peg3 Promoters. PMID:27711129
Parallel evolution of male germline epigenetic poising and somatic development in animals. PMID:27294618
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Comparison between Timelines of Transcriptional Regulation in Mammals, Birds, and Teleost Fish Somitogenesis. PMID:27192554
A gonogenic stimulated transition of mouse embryonic stem cells with enhanced control of diverse differentiation pathways. PMID:27157261
Pdgfrb-Cre targets lymphatic endothelial cells of both venous and non-venous origins. PMID:27060598
Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus. PMID:27019019
Meta-analysis Reveals Genome-Wide Significance at 15q13 for Nonsyndromic Clefting of Both the Lip and the Palate, and Functional Analyses Implicate GREM1 As a Plausible Causative Gene. PMID:26968009
A disintegrin and metalloprotease 10 (ADAM10) is a central regulator of murine liver tissue homeostasis. PMID:26942887
Web-based volume slicer for 3D electron-microscopy data from EMDB. PMID:26876163
Cc2d1a Loss of Function Disrupts Functional and Morphological Development in Forebrain Neurons Leading to Cognitive and Social Deficits. PMID:26826102
MTD: a mammalian transcriptomic database to explore gene expression and regulation. PMID:26822098
p300 is not required for metabolic adaptation to endurance exercise training. PMID:26712218
Developing the eHistology Atlas. PMID:26500249
Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons. PMID:26302206
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Control of signaling-mediated clearance of apoptotic cells by the tumor suppressor p53. PMID:26228159
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice. PMID:26035382
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Transcriptional profiling of ectoderm specification to keratinocyte fate in human embryonic stem cells. PMID:25849374
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384 -
An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
PubMed citations: 61.
61 articles citing: An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions. PMID:34197622
Constructing the rodent stereotaxic brain atlas: a survey. PMID:33860452
Mid-Gestation lethality of Atxn2l-Ablated Mice. PMID:32698485
Nrf2 Induction Re-establishes a Proper Neuronal Differentiation Program in Friedreich's Ataxia Neural Stem Cells. PMID:31417369
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. PMID:28981708
Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype. PMID:27930808
Sam68 promotes self-renewal and glycolytic metabolism in mouse neural progenitor cells by modulating Aldh1a3 pre-mRNA 3'-end processing. PMID:27845622
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
Developing the eHistology Atlas. PMID:26500249
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain. PMID:25145340
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
The mouse Gene Expression Database (GXD): 2014 update. PMID:24163257
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
Type-1 (CB1) cannabinoid receptor promotes neuronal differentiation and maturation of neural stem cells. PMID:23372698
Supporting conditional mouse mutagenesis with a comprehensive cre characterization resource. PMID:23169059
A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20). PMID:22973865
BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. PMID:22847375
The BioMart interface to the eMouseAtlas gene expression database EMAGE. PMID:21930504
Global gene expression during the human organogenesis: from transcription profiles to function predictions. PMID:21927576
The GUDMAP database--an online resource for genitourinary research. PMID:21652655
The mouse Gene Expression Database (GXD): 2011 update. PMID:21062809
Expression patterns of astrocyte elevated gene-1 (AEG-1) during development of the mouse embryo. PMID:20736086
Species-specific differential AhR expression protects human neural progenitor cells against developmental neurotoxicity of PAHs. PMID:20570779
Oriented cell motility and division underlie early limb bud morphogenesis. PMID:20554720
A MOD(ern) perspective on literature curation. PMID:20221640
Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology. PMID:19921742
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
EMAGE mouse embryo spatial gene expression database: 2010 update. PMID:19767607
Protein tyrosine phosphatases expression during development of mouse superior colliculus. PMID:19727691
The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data. PMID:18629134
Embryonic motor axon development in the severe SMA mouse. PMID:18603534
Dynamic expression patterns of ECM molecules in the developing mouse olfactory pathway. PMID:18570250
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update. PMID:18077470
Multimodal, multidimensional models of mouse brain. PMID:17767578
Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species. PMID:17566825
A high-resolution anatomical ontology of the developing murine genitourinary tract. PMID:17452023
Functional expression of aquaporins in embryonic, postnatal, and adult mouse lenses. PMID:17377981
Enhancer identification through comparative genomics. PMID:17276707
The mouse Gene Expression Database (GXD): 2007 update. PMID:17130151
VISTA Enhancer Browser--a database of tissue-specific human enhancers. PMID:17130149
A high-resolution anatomical rat atlas. PMID:17062027
The unique 473HD-Chondroitinsulfate epitope is expressed by radial glia and involved in neural precursor cell proliferation. PMID:16611825
LONI visualization environment. PMID:16598642
EMAGE: a spatial database of gene expression patterns during mouse embryo development. PMID:16381949
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. PMID:15774030
JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases. PMID:15757508
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. PMID:15642099
The informatics of a C57BL/6J mouse brain atlas. PMID:15043223
EMAP and EMAGE: a framework for understanding spatially organized data. PMID:15043218
A multimodal, multidimensional atlas of the C57BL/6J mouse brain. PMID:15032916
The mouse Gene Expression Database (GXD): updates and enhancements. PMID:14681482
GenePaint.org: an atlas of gene expression patterns in the mouse embryo. PMID:14681479
Pathbase: a database of mutant mouse pathology. PMID:14681470
An ontology of human developmental anatomy. PMID:14620375
MEPD: a Medaka gene expression pattern database. PMID:12519950
Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies. PMID:12466303
The Mouse Gene Expression Database (GXD). PMID:11125060
GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group. PMID:10592197 -
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
PubMed citations: 33.
33 articles citing: EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
LAMA: automated image analysis for the developmental phenotyping of mouse embryos. PMID:33574040
Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. PMID:32939051
GXD's RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest. PMID:32140729
An atlas of evidence-based phenotypic associations across the mouse phenome. PMID:32127602
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
Common and distinct transcriptional signatures of mammalian embryonic lethality. PMID:31243271
Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germline transcription in the mouse. PMID:31043422
The mouse Gene Expression Database (GXD): 2019 update. PMID:30335138
High-throughput mouse phenomics for characterizing mammalian gene function. PMID:29626206
eHistology image and annotation data from the Kaufman Atlas of Mouse Development. PMID:29272399
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. PMID:28981708
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
The mouse Gene Expression Database (GXD): 2017 update. PMID:27899677
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
The old and new face of craniofacial research: How animal models inform human craniofacial genetic and clinical data. PMID:26808208
Developing the eHistology Atlas. PMID:26500249
My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development. PMID:26413258
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Orthology for comparative genomics in the mouse genome database. PMID:26223881
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Mouse Genome Database: From sequence to phenotypes and disease models. PMID:26150326
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
An illustrated anatomical ontology of the developing mouse lower urogenital tract. PMID:25968320
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. PMID:25825715
Single-cell-level spatial gene expression in the embryonic neural differentiation niche. PMID:25575549
Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain. PMID:25145340
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. PMID:24568621
EMAGE mouse embryo spatial gene expression database: 2014 update. PMID:24265223
In silico approaches and the role of ontologies in aging research. PMID:24188080 -
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data
PubMed citations: 26.
26 articles citing: Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Annotated expression and activity data for murine recombinase alleles and transgenes: the CrePortal resource. PMID:34482425
Reactome and the Gene Ontology: Digital convergence of data resources. PMID:33964129
Establishment and application of information resource of mutant mice in RIKEN BioResource Research Center. PMID:33455583
The mouse Gene Expression Database (GXD): 2021 update. PMID:33104772
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Automated generation of gene summaries at the Alliance of Genome Resources. PMID:32559296
GXD's RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest. PMID:32140729
An atlas of evidence-based phenotypic associations across the mouse phenome. PMID:32127602
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
Bovine Genome Database: new annotation tools for a new reference genome. PMID:31647100
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems. PMID:31548717
Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies. PMID:30858527
The mouse Gene Expression Database (GXD): 2019 update. PMID:30335138
Where to search top-K biomedical ontologies? PMID:29579141
eHistology image and annotation data from the Kaufman Atlas of Mouse Development. PMID:29272399
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. PMID:29083911
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case. PMID:28196369
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
The mouse Gene Expression Database (GXD): 2017 update. PMID:27899677
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
Navigating the Phenotype Frontier: The Monarch Initiative. PMID:27516611
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. PMID:26481361 -
Formalization of mouse embryo anatomy
PubMed citations: 20.
20 articles citing: Formalization of mouse embryo anatomy
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
A Factor Graph Approach to Automated GO Annotation. PMID:26771463
My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development. PMID:26413258
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
Catalog of mRNA expression patterns for DNA methylating and demethylating genes in developing mouse lower urinary tract. PMID:23920106
A high-resolution molecular atlas of the fetal mouse lower urogenital tract. PMID:21905163
Live imaging of mouse embryos. PMID:21460058
The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. PMID:21458441
Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. PMID:20495688
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. PMID:19592395
The Mouse Limb Anatomy Atlas: an interactive 3D tool for studying embryonic limb patterning. PMID:18793391
Celsius: a community resource for Affymetrix microarray data. PMID:17570842
A high-resolution anatomical ontology of the developing murine genitourinary tract. PMID:17452023
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. PMID:17142475
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PMID:16602821
Anatomical ontologies: names and places in biology. PMID:15833128
Providing visualisation support for the analysis of anatomy ontology data. PMID:15790390
Anatomics: the intersection of anatomy and bioinformatics. PMID:15679867
Integrating partonomic hierarchies in anatomy ontologies. PMID:15566564
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life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
morphology
metasource: Fairsharing.org
version: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
morphology
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAP; e-Mouse Atlas Project Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8jns8; Last edited: Dec. 16, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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