Tag: immunoproteins and antigens

The Allele Frequency Net Database (AFND) provides the scientific community with a freely available repository for the storage of frequency data (alleles, genes, haplotypes and genotypes) related to human leukocyte antigens (HLA), killer-cell immunogl ...

CellPhoneDB is a publicly available repository of curated receptors, ligands and their interactions. Subunit architecture is included for both ligands and receptors, representing heteromeric complexes accurately. This is crucial, as cell-cell communi ...

VBASE2 is an integrative database of germ-line variable genes from the immunoglobulin loci of human and mouse. All variable gene sequences are extracted from the EMBL-Bank.

The primary goal of VDJdb is to facilitate access to existing information on T-cell receptor antigen specificities, i.e. the ability to recognize certain epitopes in certain MHC contexts. Our mission is to both aggregate the scarce TCR specificity in ...

Provides a searchable repository of highly curated HLA sequences. The naming of these HLA genes and alleles and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA I ...

The Resource of Asian Primary Immunodeficiency Diseases (RAPID) is a repository of molecular alterations in primary immunodeficiency diseases (PID). It hosts information on sequence variations and expression at the mRNA and protein levels of all gene ...

The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies.

CRISPR/Cas9 Off-Target Cleavage Assays

StackIL6 is a stacking ensemble model for improving the prediction of IL-6 inducing peptides.

dbPepNeo is a manually curated database for human tumor neoantigen peptides.

CoronaVR is a Computational Resource and Analysis of Epitopes and Therapeutics for Severe Acute Respiratory Syndrome Coronavirus-2. It is a comprehensive web resource for SARS-CoV-2 study.

Pan immune repertoire database (PIRD) collects raw and processed sequences of immunoglobulins (IGs) and T cell receptors (TCRs) of human and other vertebrate species with different phenotypes. You can check the detailed information of each sample in ...

An Unbiased Data Set for Machine Learning and Virtual Screening. 15 target sets, 9780 actives,and 407839 inactives from high-confidence PubChem Bioassay data. LIT-PCBA: A dataset for virtual screening and machine learninig.

A human immunosuppression gene database. HisgAtlas is the first database that stores a list of immunosuppression genes collected by literature mining and manual curation. 995 human immunosuppression genes and 260 associated diseases are collected in ...

A Rapid and Accessible Tool That Exploits Genomic Data in Public Health and Clinical Microbiology Applications. Public databases for molecular typing and microbial genome diversity. A collection of open-access, curated databases that integrate popu ...

Structural Antibody Database

INDI-integrated nanobody database for immunoinformatics.

DBCOVP is a database of coronavirus virulent glycoproteins. A Knowledge Based Resource for Exploring the Functional and Immunological Properties of Coronavirus Virulent Glycoproteins for Application in Vaccine Target Discovery.

TANTIGEN 2.0 (Tumor T-cell Antigen Database) is a knowledge base of tumor T cell antigens and epitopes.

Vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses.

SCEptRe provides weekly updated, non-redundant, user customized benchmark datasets with information on the immune receptor features for receptor-specific epitope predictions. This tool extracts weekly updated 3D complexes of antibody-antigen, TCR-pMH ...

A comprehensive database of trained immunity.

A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences.

NEPdb is a database of T-cell experimentally-validated neoantigens and pan-cancer predicted neoepitopes for cancer immunotherapy. It contains more than 17,000 validated human immunogenic and non-immunogenic neoepitope entries with human leukocyte ant ...

Human Antigen Receptor Consortium (huARdb) is a comprehensive database of single cell immune profiling and V(D)J T cell and B cell analysis, enhanced with advanced visualization of single-cell data.

SYNBIP is a SBP database that UNIQUE in (a) comprehensively describing thousands of SBPs from the perspectives of scaffolds, biophysical & functional properties, etc.; (b) panoramically illustrating the binding targets & the broad application of each ...

Enabling systems immunology with a manually curated intercellular immune interaction network. ImmunoGlobe is a map of the immune network that describes how different parts of the immune system work together to drive immune responses. By structuring ...

A dedicated database of non-B cell derived immunoglobulin variable region. Non-B cell derived ImmunoGlobulin Variable region Database. Welcome to NBIGV, a database dedicated to organizing and characterizing non-B cell derived immunoglobulins.

Experimental coronavirus protein structures

Cancer Antigens Database (CAD) designed to facilitate users to perform a complete exploration of cancer antigens online.

A genetic and proteomic database for the SARS-CoV, MERS-CoV, and SARS-COV-2.

A curated database for binding affinity and neutralization profiles of coronavirus related antibodies.

Esc (Immune escape variants in SARS-CoV-2) is a comprehensive and manually curated compendium of genetic variants in SARS-CoV-2 associated with immune escape. The data on variants and associations have been compiled from published literature as well ...

Data portal for standardized stem cell information. ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of Stem Cell Bank data by miacarm, standard data format for all the stem cell lines with minimum necessary information f ...

the Coronavirus Antibody Database (CoV-AbDab) is a database containing the oV-AbDab contains data on over published and patented antibodies and nanobodies known to bind to at least one betacoronavirus.

ArVirInd is a knowledge-base of Arbo-Viral proteins from India and its neighbourhood. his is a annotated database, which acts as a repository of Protein sequences for arbo-viruses along with antigenic information. Users can search for protein sequenc ...

A Database of Curated Antibody Repertoires for Exploring antibody diversity and Predicting Antibody Prevalence | cAb-Rep is a database of curated antibody repertoires. It currently includes 306 B cell repertoires collected from 121 human individuals, ...

Metal binding sites, antigen epitopes, and drug binding sites are viral protein hotspots that control how viruses interact with their hosts. Like Google maps organizes and annotates points of interest on the planet, virus-M-E-D (Metal binding sites, ...

COVID-19 antibody therapeutics tracker is a global online database of antibody therapeutics for the prevention and treatment of COVID-19.

The HLA Ligand Atlas. A resource of natural HLA ligands presented on benign tissues | The HLA Ligand Atlas is a comprehensive, tissue and HLA allele specific collection of HLA ligands, generated from more than 1,000 MS experiments | This website uses ...