ooTFD

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

Transcription Factor Class

TFClass is a resource that classifies eukaryotic transcription factors (TFs) according to their DNA-binding domains. Combining information from different resources, manually checking the retrieved mam ...

Annotated regulatory Binding Sites from Orthologous Promoters

ABS: A database of Annotated regulatory Binding Sites from known binding sites identified in promoters of orthologous vertebrate genes.

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

PRODORIC2

HOmo sapiens transcription factor COmprehensive MOdel COllection

HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v10 provides transcription factor (TF) binding models for 601 human and 396 mouse TFs. In addition to basic mononucleotide position weight matric ...

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

Factorbook

Human transcription factor binding data from ChIP-seq

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

TrSDB

Transcription factor database

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

TESS

TESS (Transcription Element Search System, http://www.cbil.upenn.edu/tess) is a web-based service that searches DNA sequence for transcription factor binding sites. It integrates three databases of tr ...

Animal Transcription Factor Database

AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elega ...

FlyFactorSurvey

Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

TRACTOR db

Experimental data on the Escherichia coli transcriptional regulatory system has been used in the past years to predict new regulatory elements (promoters, Transcription Factors (TFs), TFs' binding sit ...

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database