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VastDB

Names
More detailed information about this field from each metasource.

VastDB
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

vastdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Other names: vastdb

Names

More detailed information about this field from each metasource.

VastDB

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

vastdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

An atlas of alternative splicing profiles in vertebrate cell and tissue types

Description

More detailed information about this field from each metasource.

An atlas of alternative splicing profiles in vertebrate cell and tissue types

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Webpage:

http://vastdb.crg.eu/

Webpage

More detailed information about this field from each metasource.

http://vastdb.crg.eu/

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Licence:

Name: Freeware

Licence name

More detailed information about this field from each metasource.

Freeware

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1101/gr.220962.117
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

http://dx.doi.org/10.1101/gr.220962.117

Tags:

Tags
More detailed information about this field from each metasource.

rna splicing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

rna splicing rna sequence

More to explore:

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SpliceInfo

The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...

FishExp

Database and analysis platform for gene expression and alternative splicing of fish species.

TeaAS

A comprehensive database for alternative splicing in tea plants (Camellia sinensis).

MetazExp

A database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species.

ASlive

A database for alternative splicing atlas in livestock animals. The alternative splicing in livestock animals database (ASlive.org) is a collection of alternative splicing events across tissues in li ...

Alternative Splicing Gallery

The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also v ...

3 aQTL-atlas

An atlas of 3'UTR alternative polyadenylation quantitative trait loci across human normal tissues.

ProSAS

Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure

SpliceDisease DB

Linking RNA splicing and disease. Database that collects and curates data of RNA Splicing mutation and disease. The RNA Splicing mutations include cis-acting mutations that disrupt splicing and trans- ...

ipaQTL-atlas

An atlas of intronic polyadenylation quantitative trait loci across human tissues.

H-DBAS

H-DBAS is a specialized database for human alternative splicing (AS) based on H-Invitational full-length cDNAs. RNA-Seq tag information is correlated to the AS exons and splice junctions. A total of 1 ...

EDAS - EST-Derived Alternative Splicing Database

EDAS is a database of alternative splicing derived from the anlaysis of genomic, protein, mRNA and EST data. It provides classification of elementary alternatives into main types, combined searches fo ...

MeDAS

Alternative splicing during development in 20 species

SpliceDisease

The SpliceDisease database provides information linking RNA splicing to human disease, including the change of the nucleotide in the sequence, the location of the mutation on the gene, the reference P ...

ASPicDB

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the function ...

ALEXA

ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by th ...

CuAS

CuAS is an integrated database for Cucumber Alternative Splicing, includes genomic annotation, isoform-level functions, isoform-level features and tissue-specific AS events among multiple tissues.

TF-Marker

A comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human.

Extracellular RNA Atlas

The exRNA Atlas is the data and metadata repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different context ...

Domain Interaction Graph Guided ExploreR

DIGGER is an essential resource for studying the mechanistic consequences of alternative splicing such as isoform-specific interaction and consequence of exon skipping. The database integrates informa ...

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[email protected]

Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine

VastDB Names More detailed information about this field from each metasource. × VastDB metasource: bio.tools version: extracted_at: 2022-11-04T11:31:17.040189 vastdb metasource: bio.tools version: extracted_at: 2022-11-04T11:31:17.040189 Close

Webpage:

Licence:

Publications: Publications More detailed information about this field from each metasource. × http://dx.doi.org/10.1101/gr.220962.117 metasource: bio.tools version: extracted_at: 2022-11-04T11:31:17.040189 Close

Tags: Tags More detailed information about this field from each metasource. × rna splicing metasource: bio.tools version: extracted_at: 2022-11-04T11:31:17.040189 rna-seq metasource: bio.tools version: extracted_at: 2022-11-04T11:31:17.040189 Close

More to explore:

1/20

SpliceInfo

FishExp

TeaAS

MetazExp

ASlive

Alternative Splicing Gallery

3 aQTL-atlas

ProSAS

SpliceDisease DB

ipaQTL-atlas

H-DBAS

EDAS - EST-Derived Alternative Splicing Database

MeDAS

SpliceDisease

ASPicDB

ALEXA

CuAS

TF-Marker

Extracellular RNA Atlas

Domain Interaction Graph Guided ExploreR

VastDB

Names
More detailed information about this field from each metasource.

VastDB
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

vastdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1101/gr.220962.117
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

Tags:

Tags
More detailed information about this field from each metasource.

rna splicing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189

rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:17.040189