H-DBAS
H-DBAS is a specialized database for human alternative splicing (AS) based on H-Invitational full-length cDNAs. RNA-Seq tag information is correlated to the AS exons and splice junctions. A total of 148,376,598 RNA-Seq tags have been generated from RNAs extracted from cytoplasmic, nuclear and polysome fractions. A comparative genomics viewer allows users can empirically understand the evolutionary turnover of AS.
Description
More detailed information about this field from each metasource.
H-DBAS is a specialized database for human alternative splicing (AS) based on H-Invitational full-length cDNAs. RNA-Seq tag information is correlated to the AS exons and splice junctions. A total of 148,376,598 RNA-Seq tags have been generated from RNAs extracted from cytoplasmic, nuclear and polysome fractions. A comparative genomics viewer allows users can empirically understand the evolutionary turnover of AS.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
Webpage:
http://h-invitational.jp/h-dbas/Webpage
More detailed information about this field from each metasource.
http://h-invitational.jp/h-dbas/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
Publications:
Publications
More detailed information about this field from each metasource.
H-DBAS: human-transcriptome database for alternative splicing: update 2010
PMID: 19969536
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
Publications
More detailed information about this field from each metasource.
H-DBAS: human-transcriptome database for alternative splicing: update 2010
PMID: 19969536
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
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H-DBAS: human-transcriptome database for alternative splicing: update 2010
PubMed citations: 20.
20 articles citing: H-DBAS: human-transcriptome database for alternative splicing: update 2010
Serum miRNAs are differentially altered by ethanol and caffeine consumption in rats. PMID:32055392
Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques. PMID:29363555
ASpedia: a comprehensive encyclopedia of human alternative splicing. PMID:29106599
Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. PMID:28673540
The Functional Human C-Terminome. PMID:27050421
Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. PMID:26615025
Methylxanthines Increase Expression of the Splicing Factor SRSF2 by Regulating Multiple Post-transcriptional Mechanisms. PMID:25818199
Biological databases for human research. PMID:25712261
Novel transcription factor variants through RNA-sequencing: the importance of being "alternative". PMID:25590302
CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics. PMID:25392417
Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing. PMID:24058384
Alternative splicing for diseases, cancers, drugs, and databases. PMID:23766705
Widespread splicing changes in human brain development and aging. PMID:23340839
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. PMID:23197657
Function of alternative splicing. PMID:22909801
Inferring transcript phylogenies. PMID:22831154
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. PMID:21173032
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. PMID:21051348
Assessment of orthologous splicing isoforms in human and mouse orthologous genes. PMID:20920313
A computational approach for genome-wide mapping of splicing factor binding sites. PMID:19296853
Tags:
Tags
More detailed information about this field from each metasource.
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
rna splicing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.867102
Tags
More detailed information about this field from each metasource.
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
rna splicing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:27.867102
gene transcripts rna splicing rna sequence gene expression
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