Root System Markup Language
Names
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Root System Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
RSML
metasource: Fairsharing.org
version: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Root System Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
RSML
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Root System Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
RSML
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
RSML follows the XML standard to store 2D or 3D image metadata, plant and root properties and geometries, continuous functions along individual root paths and a suite of annotations at the image, plant or root scales, at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An xml-schema describes the features and constraints of RSML and open-source packages have been developed in several languages (R, Excel, Java, Python, C#) to enable researchers to integrate RSML files into popular research workflow.
Description
More detailed information about this field from each metasource.
RSML follows the XML standard to store 2D or 3D image metadata, plant and root properties and geometries, continuous functions along individual root paths and a suite of annotations at the image, plant or root scales, at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An xml-schema describes the features and constraints of RSML and open-source packages have been developed in several languages (R, Excel, Java, Python, C#) to enable researchers to integrate RSML files into popular research workflow.
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://rootsystemml.github.io/Webpage
More detailed information about this field from each metasource.
http://rootsystemml.github.io/
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Root system markup language: toward a unified root architecture description language
PMID: 25614065
metasource: Fairsharing.org
version: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Root system markup language: toward a unified root architecture description language
PMID: 25614065
metasource: Fairsharing.org
version: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Root system markup language: toward a unified root architecture description language
PubMed citations: 31.
31 articles citing: Root system markup language: toward a unified root architecture description language
TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging. PMID:34903248
Identifying Developmental Patterns in Structured Plant Phenotyping Data. PMID:34822155
Genomic prediction and QTL mapping of root system architecture and above-ground agronomic traits in rice (Oryza sativa L.) with a multitrait index and Bayesian networks. PMID:34568907
Root phenotyping: important and minimum information required for root modeling in crop plants. PMID:33762880
Semiautomated 3D Root Segmentation and Evaluation Based on X-Ray CT Imagery. PMID:33644765
Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based Clusters. PMID:33313543
Two decades of functional-structural plant modelling: now addressing fundamental questions in systems biology and predictive ecology. PMID:32725187
Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake. PMID:32296451
Characterization of Cover Crop Rooting Types from Integration of Rhizobox Imaging and Root Atlas Information. PMID:31744188
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures. PMID:31702012
A Linear Model to Describe Branching and Allometry in Root Architecture. PMID:31336829
MyROOT: a method and software for the semiautomatic measurement of primary root length in Arabidopsis seedlings. PMID:30809923
The Quantitative Genetic Control of Root Architecture in Maize. PMID:30020530
EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture. PMID:29895611
archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems. PMID:29636899
CRootBox: a structural-functional modelling framework for root systems. PMID:29432520
Phenotyping field-state wheat root system architecture for root foraging traits in response to environment×management interactions. PMID:29422488
Optimizing soil-coring strategies to quantify root-length-density distribution in field-grown maize: virtual coring trials using 3-D root architecture models. PMID:29155915
Virtual Plants Need Water Too: Functional-Structural Root System Models in the Context of Drought Tolerance Breeding. PMID:29018456
Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. PMID:28659934
Using a Structural Root System Model to Evaluate and Improve the Accuracy of Root Image Analysis Pipelines. PMID:28421089
Towards quantitative root hydraulic phenotyping: novel mathematical functions to calculate plant-scale hydraulic parameters from root system functional and structural traits. PMID:28255663
Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology. PMID:28217137
Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops. PMID:27847508
Root adaptations to soils with low fertility and aluminium toxicity. PMID:27255099
Root Traits and Phenotyping Strategies for Plant Improvement. PMID:27135332
DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. PMID:26666975
Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. PMID:26535051
GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems. PMID:26287479
RootGraph: a graphic optimization tool for automated image analysis of plant roots. PMID:26224880
Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat. PMID:25740921
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root
metasource: Fairsharing.org
version: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
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root
metasource: Fairsharing.orgversion: FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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