ProForma
Developed by the Consortium for Top-Down Proteomics, ProForma is a standardized notation for writing fully characterized proteoforms. A proteoform is a specific set of amino acids arranged in a particular order, which may be further modified (cotranslationally, posttranslationally or chemically) at designated locations. This nomenclature is intended to be both machine and human readable, and to be sufficiently flexible to meet current and foreseeable needs.
Description
More detailed information about this field from each metasource.
Developed by the Consortium for Top-Down Proteomics, ProForma is a standardized notation for writing fully characterized proteoforms. A proteoform is a specific set of amino acids arranged in a particular order, which may be further modified (cotranslationally, posttranslationally or chemically) at designated locations. This nomenclature is intended to be both machine and human readable, and to be sufficiently flexible to meet current and foreseeable needs.
metasource: Fairsharing.orgversion: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
https://topdownproteomics.github.io/ProteoformNomenclatureStandard/Webpage
More detailed information about this field from each metasource.
https://topdownproteomics.github.io/ProteoformNomenclatureStandard/
metasource: Fairsharing.orgversion: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
ProForma: A Standard Proteoform Notation
PMID: 29397739
metasource: Fairsharing.org
version: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
ProForma: A Standard Proteoform Notation
PMID: 29397739
metasource: Fairsharing.org
version: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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ProForma: A Standard Proteoform Notation
PubMed citations: 17.
17 articles citing: ProForma: A Standard Proteoform Notation
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. PMID:35290070
The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. PMID:34986596
The Human Proteoform Project: Defining the human proteome. PMID:34767442
Internal Fragment Ions Disambiguate and Increase Identifications in Top-Down Proteomics. PMID:34738820
Fourier-transform ion cyclotron resonance mass spectrometry for characterizing proteoforms. PMID:32894796
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks. PMID:32423472
Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass Spectrometer. PMID:31999103
Ion Activation Methods for Peptides and Proteins. PMID:31665881
Top-Down Proteomics of Medicinal Cannabis. PMID:31554318
Top-Down and Intact Protein Mass Spectrometry Data Visualization for Proteoform Analysis Using VisioProt-MS. PMID:31452600
A five-level classification system for proteoform identifications. PMID:31451767
Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. PMID:31249407
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
Top or Middle? Up or Down? Toward a Standard Lexicon for Protein Top-Down and Allied Mass Spectrometry Approaches. PMID:31073892
Identification and Quantification of Proteoforms by Mass Spectrometry. PMID:31050378
A comprehensive pipeline for translational top-down proteomics from a single blood draw. PMID:30518910
Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function. PMID:30269496
Tags:
Tags
More detailed information about this field from each metasource.
protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
top-down proteomics
metasource: Fairsharing.org
version: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
top-down proteomics
metasource: Fairsharing.orgversion: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: ProForma; ProForma; DOI: https://doi.org/10.25504/FAIRsharing.78Lz1O; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein modification top-down proteomics polypeptide region
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