UniVec
UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination). In addition to vector sequences, UniVec also contains sequences for those adapters, linkers, and primers commonly used in the process of cloning cDNA or genomic DNA.
Description
More detailed information about this field from each metasource.
UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination). In addition to vector sequences, UniVec also contains sequences for those adapters, linkers, and primers commonly used in the process of cloning cDNA or genomic DNA.
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
UniVec is a non-redundant database of sequences commonly attached to cDNA or genomic DNA during the cloning process. This database is intended to be used for screening nucleic acid sequences for vector contamination. UniVec primarily consists of the unique segments from a large number of vectors but also includes many linker, adapter and primer sequences. Redundant sub-sequences have been eliminated from the database to make searches more efficient and to simplify interpretation of the results.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.htmlWebpage
More detailed information about this field from each metasource.
http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.html
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: NCBI Data Policies and DisclaimerLicence name
More detailed information about this field from each metasource.
NCBI Data Policies and Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
More detailed information about this field from each metasource.
http://www.ncbi.nlm.nih.gov/home/about/policies.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology
PMID: 12519941
metasource: Fairsharing.org
version: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology
PMID: 12519941
metasource: Fairsharing.org
version: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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Database resources of the National Center for Biotechnology
PubMed citations: 373.
373 articles citing: Database resources of the National Center for Biotechnology
Examination of the Virome of Taro Plants Affected by a Lethal Disease, the Alomae-Bobone Virus Complex, in Papua New Guinea. PMID:35891390
Divergent evolution of extreme production of variant plant monounsaturated fatty acids. PMID:35867834
In silico analyses of leptin and leptin receptor of spotted snakehead Channa punctata. PMID:35797380
Genomic Characterization of Mutli-Drug Resistant Pseudomonas aeruginosa Clinical Isolates: Evaluation and Determination of Ceftolozane/Tazobactam Activity and Resistance Mechanisms. PMID:35782142
The GP-45 Protein, a Highly Variable Antigen from Babesia bigemina, Contains Conserved B-Cell Epitopes in Geographically Distant Isolates. PMID:35631112
Function and Application of the CRISPR-Cas System in the Plant Pathogen Erwinia amylovora. PMID:35285707
LncPep: A Resource of Translational Evidences for lncRNAs. PMID:35141219
Construction of Aerobic/Anaerobic-Substrate-Induced Gene Expression Procedure for Exploration of Metagenomes From Subseafloor Sediments. PMID:35095779
African Swine Fever Virus and Host Response: Transcriptome Profiling of the Georgia 2007/1 Strain and Porcine Macrophages. PMID:35019713
Integrative omics analysis identifies biomarkers of idiopathic pulmonary fibrosis. PMID:35015148
Salivary and Intestinal Transcriptomes Reveal Differential Gene Expression in Starving, Fed and Trypanosoma cruzi-Infected Rhodnius neglectus. PMID:34988032
Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types. PMID:34949670
Locus-specific expression of transposable elements in single cells with CELLO-seq. PMID:34782740
A consensus-based ensemble approach to improve transcriptome assembly. PMID:34674629
Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA. PMID:34354070
Reboot: a straightforward approach to identify genes and splicing isoforms associated with cancer patient prognosis. PMID:34316711
The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities. PMID:34304594
Novel viruses associated with plants of the family Amaryllidaceae in South Africa. PMID:34279720
A phylogeny-aware approach reveals unexpected venom components in divergent lineages of cone snails. PMID:34229491
The mitochondrial genomes of five spring and groundwater amphipods of the family Crangonyctidae (Crustacea: Amphipoda) from eastern North America. PMID:34104729
Clinical and Neuroimaging Features in Charcot-Marie-Tooth Patients with GNB4 Mutations. PMID:34071515
Analysis of TERT Isoforms across TCGA, GTEx and CCLE Datasets. PMID:33924498
How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA. PMID:33893297
Identification and Sequence Analysis of a Novel Ilarvirus Infecting Sweet Cherry. PMID:33801805
The complete mitochondrial genome of the White-Nose Syndrome pathogen, Pseudogymnoascus destructans. PMID:33473712
At Least Seven Distinct Rotavirus Genotype Constellations in Bats with Evidence of Reassortment and Zoonotic Transmissions. PMID:33468689
Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases. PMID:33420292
In silico prediction and segregation analysis of putative virus defense genes based on SSR markers in sweet potato F1 progenies of cultivars 'New Kawogo' and 'Resisto'. PMID:33281890
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). PMID:33239395
Haplotype threading: accurate polyploid phasing from long reads. PMID:32951599
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids. PMID:32797185
Transcriptome view of a killer: African swine fever virus. PMID:32725217
Enabling ad-hoc reuse of private data repositories through schema extraction. PMID:32641124
Beyond Cholera: Characterization of zot-Encoding Filamentous Phages in the Marine Fish Pathogen Vibrio anguillarum. PMID:32640584
The role of rare compound heterozygous events in autism spectrum disorder. PMID:32572023
Proteomics of Brucella. PMID:32331335
A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. PMID:32253450
A Novel Polyester Hydrolase From the Marine Bacterium Pseudomonas aestusnigri - Structural and Functional Insights. PMID:32117139
Organic-Solvent-Tolerant Carboxylic Ester Hydrolases for Organic Synthesis. PMID:32111588
The African Swine Fever Virus Transcriptome. PMID:32075923
The First Non-LRV RNA Virus in Leishmania. PMID:32024293
Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA. PMID:32019587
Whole-Genome-Sequence-Based Characterization of Extensively Drug-Resistant Acinetobacter baumannii Hospital Outbreak. PMID:31941816
Whole-Transcriptome Analysis of Dermal Fibroblasts, Derived from Three Pairs of Monozygotic Twins, Discordant for Parkinson's Disease. PMID:31823283
Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018. PMID:31515334
Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus. PMID:31418013
Integrative genomic and transcriptomic analysis of genetic markers in Dupuytren's disease. PMID:31296227
The Role of APAL/ST8SIA6-AS1 lncRNA in PLK1 Activation and Mitotic Catastrophe of Tumor Cells. PMID:31286138
Functional Metagenomics Reveals a New Catalytic Domain, the Metallo-β-Lactamase Superfamily Domain, Associated with Phytase Activity. PMID:31217298
In silico analyses of molecular interactions between groundnut bud necrosis virus and its vector, Thrips palmi. PMID:31179363
Cloning of pcB and pcA Gene from Gracilariopsis lemaneiformis and Expression of a Fluorescent Phycocyanin in Heterologous Host. PMID:31035529
The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch. PMID:31013951
Identification of pharmacodynamic biomarker hypotheses through literature analysis with IBM Watson. PMID:30958864
Near-Complete Genome Sequences of Vesicular Stomatitis Virus Indiana Laboratory Strains HR and T1026R1 and Plaque Isolates 22-20 and 22-25. PMID:30948461
Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis. PMID:30936859
Discovery of Novel Antibiotic Resistance Determinants in Forest and Grassland Soil Metagenomes. PMID:30899254
Two Novel Bacteriophages Improve Survival in Galleria mellonella Infection and Mouse Acute Pneumonia Models Infected with Extensively Drug-Resistant Pseudomonas aeruginosa. PMID:30824445
MITE Aba12 , a Novel Mobile Miniature Inverted-Repeat Transposable Element Identified in Acinetobacter baumannii ATCC 17978 and Its Prevalence across the Moraxellaceae Family. PMID:30787115
The complete genome sequence of an alphabaculovirus from Spodoptera exempta, an agricultural pest of major economic significance in Africa. PMID:30735528
Characteristics of the First Protein Tyrosine Phosphatase with Phytase Activity from a Soil Metagenome. PMID:30700057
Smooth Muscle Transcriptome Browser: offering genome-wide references and expression profiles of transcripts expressed in intestinal SMC, ICC, and PDGFRα+ cells. PMID:30674925
Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico. PMID:30669967
Mitochondrial and chloroplast genomes provide insights into the evolutionary origins of quinoa (Chenopodium quinoa Willd.). PMID:30655548
Gorillas have been infected with the HERV-K (HML-2) endogenous retrovirus much more recently than humans and chimpanzees. PMID:30610173
Complete Genome Sequence of a Rodent Torque Teno Virus in Hainan Island, China. PMID:30533797
Expanded skin virome in DOCK8-deficient patients. PMID:30397357
Identification of a novel nidovirus as a potential cause of large scale mortalities in the endangered Bellinger River snapping turtle (Myuchelys georgesi). PMID:30356240
Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Medicago truncatula Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms. PMID:30349546
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID:30324905
LION LBD: a literature-based discovery system for cancer biology. PMID:30304355
Characterization of Histone Genes from the Bivalve Lucina Pectinata. PMID:30279399
Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma. PMID:30092345
A Virus in American Blackcurrant (Ribes americanum) with Distinct Genome Features Reshapes Classification in the Tymovirales. PMID:30081487
High Quality de Novo Transcriptome Assembly of Croton tiglium. PMID:30027092
Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasion. PMID:29894496
Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa. PMID:29642851
A role for the CXCR4-CXCL12 axis in the little skate, Leucoraja erinacea. PMID:29641231
TISSUES 2.0: an integrative web resource on mammalian tissue expression. PMID:29617745
Identification and characterization of the BRI2 interactome in the brain. PMID:29476059
pMEX01, a 70kb plasmid isolated from Escherichia coli that confers resistance to multiple β-lactam antibiotics. PMID:29449172
Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics. PMID:29404217
Gene expression profile analysis of the bone microenvironment in patients with spinal metastases. PMID:29387210
The rumen microbiome: an underexplored resource for novel antimicrobial discovery. PMID:29214045
The feasibility of physiologically based pharmacokinetic modeling in forensic medicine illustrated by the example of morphine. PMID:29196879
FBN3 gene involved in pathogenesis of a Chinese family with Bardet-Biedl syndrome. PMID:29156830
Draft Genome Sequence of Bacillus velezensis GF610, a Producer of Potent Anti-Listeria Agents. PMID:29025938
A physiologically based pharmacokinetic and pharmacodynamic (PBPK/PD) model of the histone deacetylase (HDAC) inhibitor vorinostat for pediatric and adult patients and its application for dose specification. PMID:28988277
An rbcL mRNA-binding protein is associated with C3 to C4 evolution and light-induced production of Rubisco in Flaveria. PMID:28981775
Analyses of Mitogenome Sequences Revealed that Asian Citrus Psyllids (Diaphorina citri) from California Were Related to Those from Florida. PMID:28860662
Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis. PMID:28748180
Transcriptome wide identification and characterization of starch branching enzyme in finger millet. PMID:28729759
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. PMID:28729549
A molecular phylogeny of the spiny lobster Panulirus homarus highlights a separately evolving lineage from the Southwest Indian Ocean. PMID:28560106
An Insight Into Structure, Function, and Expression Analysis of 3-Hydroxy-3-Methylglutaryl-CoA Reductase of Cymbopogon winterianus. PMID:28469419
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja. PMID:28279167
Ribosomal RNA Genes Contribute to the Formation of Pseudogenes and Junk DNA in the Human Genome. PMID:28204512
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases. PMID:28191889
Characterization of homing endonuclease binding and cleavage specificities using yeast surface display SELEX (YSD-SELEX). PMID:28180328
Establishment of a integrative multi-omics expression database CKDdb in the context of chronic kidney disease (CKD). PMID:28079125
Biological Databases for Hematology Research. PMID:27965103
Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation. PMID:27891220
Clarithromycin, Midazolam, and Digoxin: Application of PBPK Modeling to Gain New Insights into Drug-Drug Interactions and Co-medication Regimens. PMID:27822600
Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes. PMID:27803692
In Silico Analysis of a Novel Plasmid from the Coral Pathogen Vibrio coralliilyticus Reveals Two Potential "Ecological Islands". PMID:27681896
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. PMID:27420028
Unusually Situated Binding Sites for Bacterial Transcription Factors Can Have Hidden Functionality. PMID:27258043
Analysis of the dynamic co-expression network of heart regeneration in the zebrafish. PMID:27241320
Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation. PMID:27213290
The Unusual Acid-Accumulating Behavior during Ripening of Cherimoya (Annona cherimola Mill.) is Linked to Changes in Transcription and Enzyme Activity Related to Citric and Malic Acid Metabolism. PMID:27120592
De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting. PMID:27056411
Genetic Evidence for O-Specific Antigen as Receptor of Pseudomonas aeruginosa Phage K8 and Its Genomic Analysis. PMID:26973628
ChainRank, a chain prioritisation method for contextualisation of biological networks. PMID:26729273
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future. PMID:26309733
The Complete Genome of a New Betabaculovirus from Clostera anastomosis. PMID:26168260
Comprehensive comparison of large-scale tissue expression datasets. PMID:26157623
Properties of protein drug target classes. PMID:25822509
Bioinformatic identification of connective tissue growth factor as an osteogenic protein within skeletal muscle. PMID:25539834
Triticeae resources in Ensembl Plants. PMID:25432969
Evolution and targeting of Omp85 homologs in the chloroplast outer envelope membrane. PMID:25352854
Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation. PMID:25319825
A novel missense mutation in CCDC88C activates the JNK pathway and causes a dominant form of spinocerebellar ataxia. PMID:25062847
Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition in Emiliania huxleyi. PMID:24559402
Identification of a long non-coding RNA as a novel biomarker and potential therapeutic target for metastatic prostate cancer. PMID:24519926
Molecular cloning and yeast expression of cinnamate 4-hydroxylase from Ornithogalum saundersiae baker. PMID:24476601
Transcriptome and biochemical analyses revealed a detailed proanthocyanidin biosynthesis pathway in brown cotton fiber. PMID:24466041
Metabolomics analysis identifies d-Alanine-d-Alanine ligase as the primary lethal target of d-Cycloserine in mycobacteria. PMID:24303782
Complete Genome Sequence of the Escherichia coli PMV-1 Strain, a Model Extraintestinal Pathogenic E. coli Strain Used for Host-Pathogen Interaction Studies. PMID:24158560
Insights of biosurfactant producing Serratia marcescens strain W2.3 isolated from diseased tilapia fish: a draft genome analysis. PMID:24148830
Bicaudal-C spatially controls translation of vertebrate maternal mRNAs. PMID:24062572
Characterization of mineral phosphate solubilization traits from a barley rhizosphere soil functional metagenome. PMID:23894099
Comparative genome sequence analysis of Choristoneura occidentalis Freeman and C. rosaceana Harris (Lepidoptera: Tortricidae) alphabaculoviruses. PMID:23861954
Autism-specific maternal autoantibodies recognize critical proteins in developing brain. PMID:23838888
Identifying radiation exposure biomarkers from mouse blood transcriptome. PMID:23797995
CLASS: constrained transcript assembly of RNA-seq reads. PMID:23734605
Genomic and proteomic analyses of the terminally redundant genome of the Pseudomonas aeruginosa phage PaP1: establishment of genus PaP1-like phages. PMID:23675441
In silico expressed sequence tag analysis in identification of probable diabetic genes as virtual therapeutic targets. PMID:23509765
hERG channel function: beyond long QT. PMID:23459091
Exome sequencing identifies GNB4 mutations as a cause of dominant intermediate Charcot-Marie-Tooth disease. PMID:23434117
Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks. PMID:23282021
Isolation and molecular characterization of thirteen R2R3-MYB transcription factors from Epimedium sagittatum. PMID:23271373
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH. PMID:23263692
Functional diversity and pharmacological profiles of the FKBPs and their complexes with small natural ligands. PMID:23224428
ChromoZoom: a flexible, fluid, web-based genome browser. PMID:23220575
De novo origin of protein-coding genes in murine rodents. PMID:23185269
Complete genome sequence of the bacteriophage YMC01/01/P52 PAE BP, which causes lysis of verona integron-encoded metallo-β-lactamase-producing, carbapenem-resistant Pseudomonas aeruginosa. PMID:23166271
Identification and characterization of a gene encoding a putative lysophosphatidyl acyltransferase from Arachis hypogaea. PMID:23151793
Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region. PMID:23139801
Associations between gene expression variations and ovarian cancer risk alleles identified from genome wide association studies. PMID:23133607
Genes affected by mouse mammary tumor virus (MMTV) proviral insertions in mouse mammary tumors are deregulated or mutated in primary human mammary tumors. PMID:23131872
Complete genome sequence of the podoviral bacteriophage YMC/09/02/B1251 ABA BP, which causes the lysis of an OXA-23-producing carbapenem-resistant Acinetobacter baumannii isolate from a septic patient. PMID:23087105
Tissue-based Alzheimer gene expression markers-comparison of multiple machine learning approaches and investigation of redundancy in small biomarker sets. PMID:23066814
Genome of Epinotia aporema granulovirus (EpapGV), a polyorganotropic fast killing betabaculovirus with a novel thymidylate kinase gene. PMID:23051685
Long noncoding RNAs are rarely translated in two human cell lines. PMID:22955977
Genomic sequencing and analyses of HearMNPV--a new Multinucleocapsid nucleopolyhedrovirus isolated from Helicoverpa armigera. PMID:22913743
Chitosan dressing promotes healing in third degree burns in mice: gene expression analysis shows biphasic effects for rapid tissue regeneration and decreased fibrotic signaling. PMID:22847951
Genomic and proteomic characterization of SuMu, a Mu-like bacteriophage infecting Haemophilus parasuis. PMID:22823751
Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species. PMID:22747887
Novel metagenome-derived, cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase. PMID:22544255
Functional organization and its implication in evolution of the human protein-protein interaction network. PMID:22530615
Sequence and expression analysis of gaps in human chromosome 20. PMID:22510267
Complete genome sequence of enterococcal bacteriophage SAP6. PMID:22492926
Complete genome of temperate phage ENT39118 from Cronobacter sakazakii. PMID:22492925
A quantitative atlas of polyadenylation in five mammals. PMID:22454233
Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. PMID:22438865
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio). PMID:22424280
Identification of the para-nitrophenol catabolic pathway, and characterization of three enzymes involved in the hydroquinone pathway, in Peudomonas sp. 1-7. PMID:22380602
Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. PMID:22185641
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. PMID:22054122
Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles. PMID:21943375
Members of the murine Pate family are predominantly expressed in the epididymis in a segment-specific fashion and regulated by androgens and other testicular factors. PMID:21942998
TCR-dependent transformation of mature memory phenotype T cells in mice. PMID:21926465
Functional integrative levels in the human interactome recapitulate organ organization. PMID:21799769
Learning biomarkers of pluripotent stem cells in mouse. PMID:21791477
Deeply dissecting stemness: making sense to non-coding RNAs in stem cells. PMID:21706141
Sequencing and characterization of Pseudomonas aeruginosa phage JG004. PMID:21569567
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms. PMID:21496233
Substrate promiscuity of a rosmarinic acid synthase from lavender (Lavandula angustifolia L.). PMID:21424826
The PluriNetWork: an electronic representation of the network underlying pluripotency in mouse, and its applications. PMID:21179244
Characterization of JG024, a pseudomonas aeruginosa PB1-like broad host range phage under simulated infection conditions. PMID:21110836
Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. PMID:21107309
Construction of cDNA library and preliminary analysis of expressed sequence tags from Siberian tiger. PMID:20941376
CMF70 is a subunit of the dynein regulatory complex. PMID:20876659
Gill transcriptome response to changes in environmental calcium in the green spotted puffer fish. PMID:20716350
Microarray-based analysis of cell-cycle gene expression during spermatogenesis in the mouse. PMID:20631398
Relative contributions of intrinsic structural-functional constraints and translation rate to the evolution of protein-coding genes. PMID:20624725
An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis. PMID:20608695
Molecular aspects of cyclophilins mediating therapeutic actions of their ligands. PMID:20602248
Specificity and membrane partitioning of Grsp1 signaling complexes with Grp1 family Arf exchange factors. PMID:20527794
A pipeline for high throughput detection and mapping of SNPs from EST databases. PMID:20502512
Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. PMID:20494980
Structure, evolutionary conservation, and conformational dynamics of Homo sapiens fascin-1, an F-actin crosslinking protein. PMID:20434460
Visualizing genomes: techniques and challenges. PMID:20195257
Genomic sequencing and analyses of Lymantria xylina multiple nucleopolyhedrovirus. PMID:20167051
Identification of candidates for cyclotide biosynthesis and cyclisation by expressed sequence tag analysis of Oldenlandia affinis. PMID:20158917
Histone modification levels are predictive for gene expression. PMID:20133639
Improving gene expression similarity measurement using pathway-based analytic dimension. PMID:19958478
Further understanding of fat biology: lessons from a fat fly. PMID:19887892
Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes. PMID:19698135
Genetic and gene expression analyses of the polycystic ovary syndrome candidate gene fibrillin-3 and other fibrillin family members in human ovaries. PMID:19692420
sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters. PMID:19615116
IMAD: flexible annotation of microarray sequences. PMID:19615115
Molecular cloning, sequence and expression analysis of ZmArf2, a maize ADP-ribosylation factor. PMID:19562507
Structural implication of splicing stochastics. PMID:19528068
A complex-centric view of protein network evolution. PMID:19465379
Public databases and software for the pathway analysis of cancer genomes. PMID:19455256
In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity. PMID:19405940
Mechanical factors activate beta-catenin-dependent oncogene expression in APC mouse colon. PMID:19404440
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. PMID:19351897
Nyamanini and midway viruses define a novel taxon of RNA viruses in the order Mononegavirales. PMID:19279111
An integrated approach for the systematic identification and characterization of heart-enriched genes with unknown functions. PMID:19267916
MCAM: a database to accelerate the identification of functional cell adhesion molecules. PMID:19259402
A histone map of human chromosome 20q13.12. PMID:19229332
CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data. PMID:19208176
Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise? PMID:19200403
Revisiting the missing protein-coding gene catalog of the domestic dog. PMID:19193219
Genome-wide analysis of cancer/testis gene expression. PMID:19088187
QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR. PMID:18976492
Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA. PMID:18851732
Key issues in conducting a meta-analysis of gene expression microarray datasets. PMID:18767902
PP4R4/KIAA1622 forms a novel stable cytosolic complex with phosphoprotein phosphatase 4. PMID:18715871
A resource for transcriptomic analysis in the mouse brain. PMID:18714383
Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements. PMID:18691435
Immunity related genes in dipterans share common enrichment of AT-rich motifs in their 5' regulatory regions that are potentially involved in nucleosome formation. PMID:18613977
Automated analysis of viral integration sites in gene therapy research using the SeqMap web resource. PMID:18580967
CRA-1 uncovers a double-strand break-dependent pathway promoting the assembly of central region proteins on chromosome axes during C. elegans meiosis. PMID:18535664
Generation of a non-small cell lung cancer transcriptome microarray. PMID:18513400
How many human genes can be defined as housekeeping with current expression data? PMID:18416810
Identification of a novel coronavirus from a beluga whale by using a panviral microarray. PMID:18353961
Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes. PMID:18310338
Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle. PMID:18257909
Quantitative proteomics analysis of the effects of ionizing radiation in wild type and p53 K317R knock-in mouse thymocytes. PMID:18178582
ARS2 is a conserved eukaryotic gene essential for early mammalian development. PMID:18086880
Periplasmic phosphorylation of lipid A is linked to the synthesis of undecaprenyl phosphate. PMID:18047581
The global landscape of sequence diversity. PMID:17996061
Characterization of bacterial operons consisting of two tubulins and a kinesin-like gene by the novel Two-Step Gene Walking method. PMID:17942428
Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison. PMID:17892571
MethyCancer: the database of human DNA methylation and cancer. PMID:17890243
Diversity of bacteriocins and activity spectrum in Streptococcus pneumoniae. PMID:17704229
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. PMID:17559689
Comprehensive serial analysis of gene expression of the cervical transcriptome. PMID:17543121
TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets. PMID:17517132
Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. PMID:17439966
Human sterile alpha motif domain 9, a novel gene identified as down-regulated in aggressive fibromatosis, is absent in the mouse. PMID:17407603
DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids. PMID:17407572
Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays. PMID:17394657
Lipid A modification systems in gram-negative bacteria. PMID:17362200
Impaired expression of NER gene network in sporadic solid tumors. PMID:17332015
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology. PMID:17254302
MaizeGDB's new data types, resources and activities. PMID:17202174
CYCLONET--an integrated database on cell cycle regulation and carcinogenesis. PMID:17202170
Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors. PMID:17137510
Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions. PMID:17118138
Database of traditional Chinese medicine and its application to studies of mechanism and to prescription validation. PMID:17088869
The TIGR Plant Transcript Assemblies database. PMID:17088284
Incorporating genome-scale tools for studying energy homeostasis. PMID:17081308
Mining housekeeping genes with a Naive Bayes classifier. PMID:17074078
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. PMID:17029635
AgBase: a functional genomics resource for agriculture. PMID:16961921
SyMAP: A system for discovering and viewing syntenic regions of FPC maps. PMID:16951135
JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions. PMID:16925843
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. PMID:16896230
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. PMID:16849434
CRSD: a comprehensive web server for composite regulatory signature discovery. PMID:16845073
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. PMID:16845049
Podocyte-associated proteins FAT, alpha-actinin-4 and filtrin are expressed in Langerhans islets of the pancreas. PMID:16841182
Learning interpretable SVMs for biological sequence classification. PMID:16723012
In silico identification and comparative analysis of differentially expressed genes in human and mouse tissues. PMID:16626500
Identification of a novel Gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. PMID:16609730
Sequencing and heterologous expression of an epimerase and two lyases from iminodisuccinate-degrading bacteria. PMID:16597988
Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis. PMID:16585758
Sequence alignment and homology threading reveals prokaryotic and eukaryotic proteins similar to lactose permease. PMID:16574153
Expression cloning of three Rhizobium leguminosarum lipopolysaccharide core galacturonosyltransferases. PMID:16497674
CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks. PMID:16478536
Expression cloning and periplasmic orientation of the Francisella novicida lipid A 4'-phosphatase LpxF. PMID:16467300
Genetic analysis of the cytoplasmic dynein subunit families. PMID:16440056
LTR retrotransposon-gene associations in Drosophila melanogaster. PMID:16408244
Regulation of the oxidative stress response through Slt2p-dependent destruction of cyclin C in Saccharomyces cerevisiae. PMID:16387872
DRASTIC--INSIGHTS: querying information in a plant gene expression database. PMID:16381965
BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. PMID:16381946
LMPD: LIPID MAPS proteome database. PMID:16381922
SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans. PMID:16381914
TiProD: the Tissue-specific Promoter Database. PMID:16381824
Interactions between the Fe(III)-reducing bacterium Geobacter sulfurreducens and arsenate, and capture of the metalloid by biogenic Fe(II). PMID:16332858
Towards unraveling ethanol-specific neuro-metabolomics based on ethanol responsive genes in vivo. PMID:16292512
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. PMID:16284200
In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs). PMID:16202152
Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles. PMID:16195578
XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis. PMID:16162280
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage. PMID:16146575
Genome-wide promoter extraction and analysis in human, mouse, and rat. PMID:16086854
Text-mining and information-retrieval services for molecular biology. PMID:15998455
Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. PMID:15998449
GBA server: EST-based digital gene expression profiling. PMID:15980560
T-STAG: resource and web-interface for tissue-specific transcripts and genes. PMID:15980556
A sentence sliding window approach to extract protein annotations from biomedical articles. PMID:15960831
Evaluation of BioCreAtIvE assessment of task 2. PMID:15960828
Comparative 3-D modeling of tmRNA. PMID:15958166
Footer: a quantitative comparative genomics method for efficient recognition of cis-regulatory elements. PMID:15930494
Exact tandem repeats analyzer (E-TRA): a new program for DNA sequence mining. PMID:15876583
Promoter features related to tissue specificity as measured by Shannon entropy. PMID:15833120
Burn injury causes mitochondrial dysfunction in skeletal muscle. PMID:15809440
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. PMID:15799782
GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments. PMID:15790402
The global transcriptional effects of the human papillomavirus E6 protein in cervical carcinoma cell lines are mediated by the E6AP ubiquitin ligase. PMID:15731267
Functional genomics of wood quality and properties. PMID:15629055
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites. PMID:15608292
openSputnik--a database to ESTablish comparative plant genomics using unsaturated sequence collections. PMID:15608275
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. PMID:15608263
5'SAGE: 5'-end Serial Analysis of Gene Expression database. PMID:15608259
Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. PMID:15608205
PolyA_DB: a database for mammalian mRNA polyadenylation. PMID:15608159
The truth about mouse, human, worms and yeast. PMID:15601543
Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. PMID:15601538
Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity. PMID:15582660
CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species. PMID:15550177
Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach. PMID:15493472
Periplasmic cleavage and modification of the 1-phosphate group of Helicobacter pylori lipid A. PMID:15489235
Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. PMID:15453914
Finding haplotype tagging SNPs by use of principal components analysis. PMID:15389393
Whole-genome expression profiling through fragment display and combinatorial gene identification. PMID:15356287
MsbA transporter-dependent lipid A 1-dephosphorylation on the periplasmic surface of the inner membrane: topography of francisella novicida LpxE expressed in Escherichia coli. PMID:15339914
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. PMID:15292448
The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance-related genes. PMID:15221144
National center for biotechnology information viral genomes project. PMID:15220402
The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species. PMID:15215424
PromoSer: improvements to the algorithm, visualization and accessibility. PMID:15215378
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. PMID:15215364
Sequence analysis of the genome of the Neodiprion sertifer nucleopolyhedrovirus. PMID:15194780
Bacterial alpha2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome? PMID:15186489
The Ensembl Web site: mechanics of a genome browser. PMID:15123591
Mapping of a new quantitative trait locus for resistance to malaria in mice by a comparative mapping approach with human Chromosome 5q31-q33. PMID:15118851
Gene expression profiling: from microarrays to medicine. PMID:15114052
The prokaryotic selenoproteome. PMID:15105824
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. PMID:15096275
Segmentally variable genes: a new perspective on adaptation. PMID:15094797
From a single double helix to paired double helices and back. PMID:15065662
Identification of a purine-rich intronic enhancer element in the mouse eosinophil-associated ribonuclease 2 (mEar 2) gene. PMID:15058383
Bioinformatical assay of human gene morbidity. PMID:15020709
Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection. PMID:14962985
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach. PMID:14743310
Expression array annotation using the BioMediator biological data integration system and the BioConductor analytic platform. PMID:14728212
Hembase: browser and genome portal for hematology and erythroid biology. PMID:14681483
The mouse Gene Expression Database (GXD): updates and enhancements. PMID:14681482
GermOnline, a cross-species community knowledgebase on germ cell differentiation. PMID:14681481
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. PMID:14681476
SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes. PMID:14681474
topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. PMID:14681472
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. PMID:14681463
The Mouse SAGE Site: database of public mouse SAGE libraries. PMID:14681462
MaizeGDB, the community database for maize genetics and genomics. PMID:14681441
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. PMID:14681421
VirGen: a comprehensive viral genome resource. PMID:14681415
TransportDB: a relational database of cellular membrane transport systems. PMID:14681414
Genew: the Human Gene Nomenclature Database, 2004 updates. PMID:14681406
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development. PMID:14681365
DBTSS, DataBase of Transcriptional Start Sites: progress report 2004. PMID:14681363
HERVd: the Human Endogenous RetroViruses Database: update. PMID:14681356
GenBank: update. PMID:14681350
POCUS: mining genomic sequence annotation to predict disease genes. PMID:14611661
Identifying biological themes within lists of genes with EASE. PMID:14519205
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. PMID:14500829
PANDORA: keyword-based analysis of protein sets by integration of annotation sources. PMID:14500825
Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains. PMID:12930993
Expression cloning and biochemical characterization of a Rhizobium leguminosarum lipid A 1-phosphatase. PMID:12869541
PARSESNP: A tool for the analysis of nucleotide polymorphisms. PMID:12824424
SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches. PMID:12824415
SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence. PMID:12824396
PromoSer: A large-scale mammalian promoter and transcription start site identification service. PMID:12824364
AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. PMID:12820902
Origin of the 2-amino-2-deoxy-gluconate unit in Rhizobium leguminosarum lipid A. Expression cloning of the outer membrane oxidase LpxQ. PMID:12531908
MMDB: Entrez's 3D-structure database. PMID:12520055
GenBank. PMID:12519940
Tags:
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.org
version: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: UniVec; UniVec; DOI: https://doi.org/10.25504/FAIRsharing.p4dtt2; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
complementary dna dna genome nucleic acid sequence coding and non-coding dna
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