Ontology of Microbial Phenotypes
Names
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Ontology of Microbial Phenotypes
metasource: Fairsharing.org
version: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
OMP
metasource: Fairsharing.org
version: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
Names
More detailed information about this field from each metasource.
Ontology of Microbial Phenotypes
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
OMP
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
Names
More detailed information about this field from each metasource.
Ontology of Microbial Phenotypes
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
OMP
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
The Ontology of Microbial Phenotypes (OMP) is a community ontology for annotating microbial phenotypes, including bacteria, archaea, protists, fungi, and viruses. It has been created to help with standardized capture of essential phenotypic information. OMP is designed to be compatible with other microbial phenotype ontologies, such as the Fission Yeast Phenotype Ontology (FYPO) and the Ascomycete Phenotype Ontology (APO), and aims to standardize the capture of phenotypic information to allow improved cross-species data mining and analysis.
Description
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The Ontology of Microbial Phenotypes (OMP) is a community ontology for annotating microbial phenotypes, including bacteria, archaea, protists, fungi, and viruses. It has been created to help with standardized capture of essential phenotypic information. OMP is designed to be compatible with other microbial phenotype ontologies, such as the Fission Yeast Phenotype Ontology (FYPO) and the Ascomycete Phenotype Ontology (APO), and aims to standardize the capture of phenotypic information to allow improved cross-species data mining and analysis.
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
OMP is a formal ontology of phenotypes observed in all microbes: bacteria, archaea, protists, fungi, and viruses. OMP is being developed to be compatible with other microbial phenotype ontologies, such as the Fission Yeast Phenotype Ontology (FYPO) and the Ascomycete Phenotype Ontology (APO), and aims to standardize the capture of phenotypic information to allow improved cross-species data mining and analysis.
metasource: Biontology / Bioportalversion: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
Webpage:
https://microbialphenotypes.orgWebpage
More detailed information about this field from each metasource.
https://microbialphenotypes.org
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
microbialphenotypes.org
metasource: Biontology / Bioportalversion: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
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Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
An ontology for microbial phenotypes
PMID: 25433798
metasource: Fairsharing.org
version: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-014-0294-3
metasource: Biontology / Bioportal
version: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
Publications
More detailed information about this field from each metasource.
An ontology for microbial phenotypes
PMID: 25433798
metasource: Fairsharing.org
version: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-014-0294-3
metasource: Biontology / Bioportalversion: releases/2019-06-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMP
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An ontology for microbial phenotypes
PubMed citations: 21.
21 articles citing: An ontology for microbial phenotypes
Semantics of Dairy Fermented Foods: A Microbiologist's Perspective. PMID:35804753
Inferring microbiota functions from taxonomic genes: a review. PMID:35022702
Lessons Learnt From Using the Machine Learning Random Forest Algorithm to Predict Virulence in Streptococcus pyogenes. PMID:35004362
ECO: the Evidence and Conclusion Ontology, an update for 2022. PMID:34986598
Leveraging Experimental Strategies to Capture Different Dimensions of Microbial Interactions. PMID:34646243
ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts. PMID:34327299
Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12. PMID:33561236
Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls. PMID:32082269
Organizing genome engineering for the gigabase scale. PMID:32019919
OHMI: the ontology of host-microbiome interactions. PMID:31888755
Phenotype annotation with the ontology of microbial phenotypes (OMP). PMID:31307550
Visualization and prediction of CRISPR incidence in microbial trait-space to identify drivers of antiviral immune strategy. PMID:31239539
Text mining tools for extracting information about microbial biodiversity in food. PMID:30910089
ECO, the Evidence & Conclusion Ontology: community standard for evidence information. PMID:30407590
From hairballs to hypotheses-biological insights from microbial networks. PMID:30085090
The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes. PMID:29169408
A communal catalogue reveals Earth's multiscale microbial diversity. PMID:29088705
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations. PMID:27812948
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. PMID:27076900
Prediction of microbial phenotypes based on comparative genomics. PMID:26451672 - https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-014-0294-3
Tags:
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phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
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phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: OMP; Ontology of Microbial Phenotypes; DOI: https://doi.org/10.25504/FAIRsharing.cc3f2x; Last edited: May 14, 2019, 9:16 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
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