Phenotypic QualiTy Ontology
Names
More detailed information about this field from each metasource.
Phenotypic QualiTy Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PATO
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Phenotypic Quality Ontology
metasource: Biontology / Bioportal
version: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Names
More detailed information about this field from each metasource.
Phenotypic QualiTy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PATO
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Phenotypic Quality Ontology
metasource: Biontology / Bioportalversion: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Other names: PATO, Phenotypic Quality Ontology
Names
More detailed information about this field from each metasource.
Phenotypic QualiTy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PATO
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Phenotypic Quality Ontology
metasource: Biontology / Bioportalversion: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily phenotype annotation. This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes.
Description
More detailed information about this field from each metasource.
PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily phenotype annotation. This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes.
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic, high temperature, fused, small, edematous and arrested.
metasource: Biontology / Bioportalversion: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Webpage:
https://github.com/pato-ontology/pato/Webpage
More detailed information about this field from each metasource.
https://github.com/pato-ontology/pato/
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-08-31 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PATO
Licence:
Name: BSD-3-Clause License (Modified BSD License) (New BSD License)Licence name
More detailed information about this field from each metasource.
BSD-3-Clause License (Modified BSD License) (New BSD License)
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
More detailed information about this field from each metasource.
https://opensource.org/licenses/BSD-3-Clause
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Integrating phenotype ontologies across multiple species
PMID: 20064205
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Using ontologies to describe mouse phenotypes
PMID: 15642100
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Integrating phenotype ontologies across multiple species
PMID: 20064205
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Using ontologies to describe mouse phenotypes
PMID: 15642100
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Integrating phenotype ontologies across multiple species
PubMed citations: 148.
148 articles citing: Integrating phenotype ontologies across multiple species
Screens in fly and beetle reveal vastly divergent gene sets required for developmental processes. PMID:35135533
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example. PMID:34823588
A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements. PMID:34608637
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
Predicting candidate genes from phenotypes, functions and anatomical site of expression. PMID:33051643
Semantic similarity and machine learning with ontologies. PMID:33049044
BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint. PMID:32703160
Semantic characterization of adverse outcome pathways. PMID:32278258
Automated Methods Enable Direct Computation on Phenotypic Descriptions for Novel Candidate Gene Prediction. PMID:31998331
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:31701156
A Logical Model of Homology for Comparative Biology. PMID:31596473
Phenotype annotation with the ontology of microbial phenotypes (OMP). PMID:31307550
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research. PMID:31160594
Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics. PMID:31159731
Review: New sensors and data-driven approaches-A path to next generation phenomics. PMID:31003608
Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies. PMID:30858527
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
Ontology-based semantic mapping of chemical toxicities. PMID:30468866
Biomedical ontology alignment: an approach based on representation learning. PMID:30111369
Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence. PMID:30096807
Creating a Structured AOP Knowledgebase via Ontology-Based Annotations. PMID:30057931
High-throughput mouse phenomics for characterizing mammalian gene function. PMID:29626206
Where to search top-K biomedical ontologies? PMID:29579141
Tackling the challenges of matching biomedical ontologies. PMID:29335022
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes. PMID:29325126
Improving the interoperability of biomedical ontologies with compound alignments. PMID:29316968
Integrating phenotype ontologies with PhenomeNET. PMID:29258588
Semantic prioritization of novel causative genomic variants. PMID:28414800
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Drosophila and genome-wide association studies: a review and resource for the functional dissection of human complex traits. PMID:28151408
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. PMID:27899582
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. PMID:27842607
Modeling biochemical pathways in the gene ontology. PMID:27589964
A scientist's guide for submitting data to ZFIN. PMID:27443940
The cellular microscopy phenotype ontology. PMID:27195102
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. PMID:27191170
Capturing phenotypes for precision medicine. PMID:27148566
Reporting phenotypes in mouse models when considering body size as a potential confounder. PMID:26865945
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. PMID:26507285
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
The digital revolution in phenotyping. PMID:26420780
Applications of comparative evolution to human disease genetics. PMID:26338499
Use of model organism and disease databases to support matchmaking for human disease gene discovery. PMID:26269093
The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology. PMID:26215380
Development of an Ontology for Periodontitis. PMID:26140188
The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease. PMID:26119816
Disease insights through cross-species phenotype comparisons. PMID:26092691
Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases. PMID:26051359
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies. PMID:26018570
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. PMID:25972520
TermGenie - a web-application for pattern-based ontology class generation. PMID:25937883
Linking gene expression to phenotypes via pathway information. PMID:25901272
The role of ontologies in biological and biomedical research: a functional perspective. PMID:25863278
eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment. PMID:25815161
Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. PMID:25789153
An ontology approach to comparative phenomics in plants. PMID:25774204
Similarity-based search of model organism, disease and drug effect phenotypes. PMID:25763178
A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration. PMID:25729585
Reasoning over taxonomic change: exploring alignments for the Perelleschus use case. PMID:25700173
Aber-OWL: a framework for ontology-based data access in biology. PMID:25627673
EXACT2: the semantics of biomedical protocols. PMID:25472549
An ontology for microbial phenotypes. PMID:25433798
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. PMID:25411634
iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. PMID:25378303
Organ system heterogeneity DB: a database for the visualization of phenotypes at the organ system level. PMID:25313158
Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs. PMID:25276232
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
The influence of disease categories on gene candidate predictions from model organism phenotypes. PMID:25093073
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation. PMID:25068035
Standardized description of scientific evidence using the Evidence Ontology (ECO). PMID:25052702
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Linking tissues to phenotypes using gene expression profiles. PMID:24634472
Semantic integration of gene expression analysis tools and data sources using software connectors. PMID:24341380
RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. PMID:24272250
Analyzing gene expression data in mice with the Neuro Behavior Ontology. PMID:24177753
Improved exome prioritization of disease genes through cross-species phenotype comparison. PMID:24162188
Mouse model phenotypes provide information about human drug targets. PMID:24158600
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. PMID:24131519
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
Using ontologies to study cell transitions. PMID:24103098
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
The mouse pathology ontology, MPATH; structure and applications. PMID:24033988
TrOn: an anatomical ontology for the beetle Tribolium castaneum. PMID:23936240
An integrative, translational approach to understanding rare and orphan genetically based diseases. PMID:23853703
A knowledge based approach to matching human neurodegenerative disease and animal models. PMID:23717278
Modeling functional Magnetic Resonance Imaging (fMRI) experimental variables in the Ontology of Experimental Variables and Values (OoEVV). PMID:23684873
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. PMID:23660285
FYPO: the fission yeast phenotype ontology. PMID:23658422
A semantic model for species description applied to the ensign wasps (hymenoptera: evaniidae) of New Caledonia. PMID:23652347
Systematic analysis of experimental phenotype data reveals gene functions. PMID:23626672
Decomposing phenotype descriptions for the human skeletal phenome. PMID:23440304
Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis. PMID:23429669
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
Semantically enabling a genome-wide association study database. PMID:23244533
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci. PMID:23193255
A revision of Evaniscus (Hymenoptera, Evaniidae) using ontology-based semantic phenotype annotation. PMID:23166458
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish. PMID:23104991
A UML profile for the OBO relation ontology. PMID:23095840
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. PMID:23074187
Cross-Ontology multi-level association rule mining in the Gene Ontology. PMID:23071802
Continuation-like semantics for modeling structural process anomalies. PMID:23046705
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. PMID:23046642
Towards improving phenotype representation in OWL. PMID:23046625
Open biomedical pluralism: formalising knowledge about breast cancer phenotypes. PMID:23046572
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. PMID:23046555
Evaluation of research in biomedical ontologies. PMID:22962340
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. PMID:22961259
Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis. PMID:22849591
Ontologies as integrative tools for plant science. PMID:22847540
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases. PMID:22719993
Three ontologies to define phenotype measurement data. PMID:22654893
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. PMID:22539675
NeXML: rich, extensible, and verifiable representation of comparative data and metadata. PMID:22357728
MouseFinder: Candidate disease genes from mouse phenotype data. PMID:22331800
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Disease Ontology: a backbone for disease semantic integration. PMID:22080554
Improving ontologies by automatic reasoning and evaluation of logical definitions. PMID:22032770
OBML - Ontologies in Biomedicine and Life Sciences. PMID:21996496
New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models. PMID:21987712
Integrating systems biology models and biomedical ontologies. PMID:21835028
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PMID:21789201
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
Computable visually observed phenotype ontological framework for plants. PMID:21702966
The cognitive paradigm ontology: design and application. PMID:21643732
Developing a kidney and urinary pathway knowledge base. PMID:21624162
PHENOPSIS DB: an information system for Arabidopsis thaliana phenotypic data in an environmental context. PMID:21554668
A common layer of interoperability for biomedical ontologies based on OWL EL. PMID:21343142
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
Trends in computational biology—2010. PMID:21221103
The RIKEN integrated database of mammals. PMID:21076152
Laboratory mouse models for the human genome-wide associations. PMID:21072174
Interoperability between phenotype and anatomy ontologies. PMID:20971987
ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia. PMID:20952411
Applying the functional abnormality ontology pattern to anatomical functions. PMID:20618982
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PMID:20505755
Phenex: ontological annotation of phenotypic diversity. PMID:20463926
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
Cross-product extensions of the Gene Ontology. PMID:20152934
Hematopoietic cell types: prototype for a revised cell ontology. PMID:20123131
Linking human diseases to animal models using ontology-based phenotype annotation. PMID:19956802 -
Using ontologies to describe mouse phenotypes
PubMed citations: 112.
112 articles citing: Using ontologies to describe mouse phenotypes
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example. PMID:34823588
Semantic similarity and machine learning with ontologies. PMID:33049044
Automated Methods Enable Direct Computation on Phenotypic Descriptions for Novel Candidate Gene Prediction. PMID:31998331
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. PMID:31821406
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration. PMID:31304272
Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies. PMID:30858527
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. PMID:30809638
DeepPVP: phenotype-based prioritization of causative variants using deep learning. PMID:30727941
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier. PMID:30532623
A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals. PMID:30476141
Ontology-based validation and identification of regulatory phenotypes. PMID:30423068
Biomedical ontology alignment: an approach based on representation learning. PMID:30111369
Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature. PMID:29523070
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine. PMID:29402212
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes. PMID:29325126
Integrating phenotype ontologies with PhenomeNET. PMID:29258588
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. PMID:29186578
Classification and analysis of a large collection of in vivo bioassay descriptions. PMID:28678787
Semantic prioritization of novel causative genomic variants. PMID:28414800
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. PMID:27899582
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. PMID:27842607
The cellular microscopy phenotype ontology. PMID:27195102
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. PMID:27191170
Extending gene ontology in the context of extracellular RNA and vesicle communication. PMID:27076901
LEAFDATA: a literature-curated database for Arabidopsis leaf development. PMID:26884807
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
Emerging semantics to link phenotype and environment. PMID:26713234
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
MaizeGDB update: new tools, data and interface for the maize model organism database. PMID:26432828
Applications of comparative evolution to human disease genetics. PMID:26338499
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Concept selection for phenotypes and diseases using learn to rank. PMID:26034558
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies. PMID:26018570
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. PMID:25972520
An ontology approach to comparative phenomics in plants. PMID:25774204
Similarity-based search of model organism, disease and drug effect phenotypes. PMID:25763178
Finding our way through phenotypes. PMID:25562316
An ontology for microbial phenotypes. PMID:25433798
Gene Ontology Consortium: going forward. PMID:25428369
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. PMID:25411634
The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. PMID:25276334
Usage patterns of blue flower color representation by Encyclopedia of Life content providers. PMID:25197234
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
Enriched biodiversity data as a resource and service. PMID:25057255
OntoVIP: an ontology for the annotation of object models used for medical image simulation. PMID:25038553
Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data. PMID:24795755
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. PMID:24755304
Guidelines for managing data and processes in bone and cartilage tissue engineering. PMID:24564199
RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. PMID:24272250
Analyzing gene expression data in mice with the Neuro Behavior Ontology. PMID:24177753
Mouse model phenotypes provide information about human drug targets. PMID:24158600
The Drosophila phenotype ontology. PMID:24138933
Using ontologies to study cell transitions. PMID:24103098
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
An integrative, translational approach to understanding rare and orphan genetically based diseases. PMID:23853703
A knowledge based approach to matching human neurodegenerative disease and animal models. PMID:23717278
Systematic analysis of experimental phenotype data reveals gene functions. PMID:23626672
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci. PMID:23193255
The Units Ontology: a tool for integrating units of measurement in science. PMID:23060432
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. PMID:23046642
Towards improving phenotype representation in OWL. PMID:23046625
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. PMID:23046555
Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans. PMID:22991088
Evaluation of research in biomedical ontologies. PMID:22962340
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. PMID:22961259
Ontologies as integrative tools for plant science. PMID:22847540
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases. PMID:22719993
Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. PMID:22711793
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. PMID:22539675
Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. PMID:22499558
Populous: a tool for building OWL ontologies from templates. PMID:22373396
NeXML: rich, extensible, and verifiable representation of comparative data and metadata. PMID:22357728
PomBase: a comprehensive online resource for fission yeast. PMID:22039153
Improving ontologies by automatic reasoning and evaluation of logical definitions. PMID:22032770
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. PMID:21878109
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
Developing a kidney and urinary pathway knowledge base. PMID:21624162
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
A gross anatomy ontology for hymenoptera. PMID:21209921
The RIKEN integrated database of mammals. PMID:21076152
Interoperability between phenotype and anatomy ontologies. PMID:20971987
Multiple ontologies in action: composite annotations for biosimulation models. PMID:20601121
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PMID:20505755
Phenex: ontological annotation of phenotypic diversity. PMID:20463926
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
Cross-product extensions of the Gene Ontology. PMID:20152934
Integrating phenotype ontologies across multiple species. PMID:20064205
The mammalian phenotype ontology: enabling robust annotation and comparative analysis. PMID:20052305
EuroPhenome: a repository for high-throughput mouse phenotyping data. PMID:19933761
MouseBook: an integrated portal of mouse resources. PMID:19854936
Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. PMID:19649761
Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. PMID:19426459
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. PMID:18975148
A formal ontology of subcellular neuroanatomy. PMID:18974798
Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training. PMID:18797968
Simplified ontologies allowing comparison of developmental mammalian gene expression. PMID:17961239
MUGEN mouse database; animal models of human immunological diseases. PMID:17932065
EuroPhenome and EMPReSS: online mouse phenotyping resource. PMID:17905814
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources. PMID:17436037
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. PMID:17142475
ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. PMID:17142227
Understanding mammalian genetic systems: the challenge of phenotyping in the mouse. PMID:16933996
WormBase: better software, richer content. PMID:16381915
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. PMID:15774030
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. PMID:15642099
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phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: PATO; Phenotypic QualiTy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.ezwdhz; Last edited: Jan. 29, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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