OntoBiotope
OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites (e.g. GenBank, GOLD, ATCC). OntoBiotope is developed and maintained by the Meta-omics of Microbial Ecosystems (MEM) network in which 30 microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology participate. The relevance of OntoBiotope terms is evaluated through the PubMedBiotope semantic search engine. It identifies and categorizes microbial biotopes in all PubMed abstracts by applying the ToMap method (Text to Ontology Mapping) to the OntoBiotope ontology. It also indexes 3,35 millions relations between taxa and their habitats.
Description
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OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites (e.g. GenBank, GOLD, ATCC). OntoBiotope is developed and maintained by the Meta-omics of Microbial Ecosystems (MEM) network in which 30 microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology participate. The relevance of OntoBiotope terms is evaluated through the PubMedBiotope semantic search engine. It identifies and categorizes microbial biotopes in all PubMed abstracts by applying the ToMap method (Text to Ontology Mapping) to the OntoBiotope ontology. It also indexes 3,35 millions relations between taxa and their habitats.
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://dx.doi.org/10.15454/1.4382640528105164E12Webpage
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http://dx.doi.org/10.15454/1.4382640528105164E12
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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ecosystem
metasource: Fairsharing.org
version: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
text mining
metasource: Fairsharing.org
version: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
ecosystem
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
text mining
metasource: Fairsharing.orgversion: FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: April 15, 2021, 3:43 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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