Minimum Information about Flow Cytometry
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Minimum Information about Flow Cytometry
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIFlowCyt
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information about Flow Cytometry
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIFlowCyt
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information about Flow Cytometry
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIFlowCyt
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) establishes criteria for recording and reporting information about the flow cytometry experiment overview, samples, instrumentation and data analysis. It promotes consistent annotation of clinical, biological and technical issues surrounding a flow cytometry experiment by specifying the requirements for data content and by providing a structured framework for capturing information.
Description
More detailed information about this field from each metasource.
The Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) establishes criteria for recording and reporting information about the flow cytometry experiment overview, samples, instrumentation and data analysis. It promotes consistent annotation of clinical, biological and technical issues surrounding a flow cytometry experiment by specifying the requirements for data content and by providing a structured framework for capturing information.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://flowcyt.sourceforge.net/miflowcyt/Webpage
More detailed information about this field from each metasource.
http://flowcyt.sourceforge.net/miflowcyt/
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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MIFlowCyt: the minimum information about a Flow Cytometry Experiment
PMID: 18752282
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Minimum information about a flow cytometry experiment (MIFlowCyt) checklist (Numbered in accordance with MIFlowCyt 1.0 document)
PMID: 20737419
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
MIFlowCyt: the minimum information about a Flow Cytometry Experiment
PMID: 18752282
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Minimum information about a flow cytometry experiment (MIFlowCyt) checklist (Numbered in accordance with MIFlowCyt 1.0 document)
PMID: 20737419
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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MIFlowCyt: the minimum information about a Flow Cytometry Experiment
PubMed citations: 141.
141 articles citing: MIFlowCyt: the minimum information about a Flow Cytometry Experiment
Increasing the Yield and Cryosurvival of Spermatozoa from Rhinoceros Ejaculates Using the Enzyme Papain. PMID:35205021
Impact of Seminal Plasma Antioxidants on Donkey Sperm Cryotolerance. PMID:35204299
Monocyte-Platelet Aggregates Triggered by CD31 Molecule in Non-ST Elevation Myocardial Infarction: Clinical Implications in Plaque Rupture. PMID:35146002
Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume. PMID:35140689
Role and Relevance of Cerebrospinal Fluid Cells in Diagnostics and Research: State-of-the-Art and Underutilized Opportunities. PMID:35054246
Application of Machine Learning for Cytometry Data. PMID:35046945
Flow cytometry and stroke: from current methodology to future applications. PMID:35017430
Digital research data: from analysis of existing standards to a scientific foundation for a modular metadata schema in nanosafety. PMID:34983569
Addition of Reduced Glutathione (GSH) to Freezing Medium Reduces Intracellular ROS Levels in Donkey Sperm. PMID:34941829
Breast tissue regeneration is driven by cell-matrix interactions coordinating multi-lineage stem cell differentiation through DDR1. PMID:34893587
Exogenous Albumin Is Crucial for Pig Sperm to Elicit In Vitro Capacitation Whereas Bicarbonate Only Modulates Its Efficiency. PMID:34827098
Capacitation-Induced Mitochondrial Activity Is Required for Sperm Fertilizing Ability in Mice by Modulating Hyperactivation. PMID:34765607
Higher Levels of Circulating Osteoprogenitor Cells Are Associated With Higher Bone Mineral Density and Lean Mass in Older Adults: A Cross-Sectional Study. PMID:34761152
Minimum information to report about a flow cytometry experiment on extracellular vesicles: Communication from the ISTH SSC subcommittee on vascular biology. PMID:34637195
Ruminant Milk-Derived Extracellular Vesicles: A Nutritional and Therapeutic Opportunity? PMID:34444665
Altered mitochondrial metabolism in peripheral blood cells from patients with inborn errors of β-oxidation. PMID:34437764
The Evolution of Single-Cell Analysis and Utility in Drug Development. PMID:34389904
Bayesian Analysis of the Effects of Olive Oil-Derived Antioxidants on Cryopreserved Buck Sperm Parameters. PMID:34359159
Advanced Flow Cytometry Assays for Immune Monitoring of CAR-T Cell Applications. PMID:34012442
Rapid Detection of Escherichia coli Antibiotic Susceptibility Using Live/Dead Spectrometry for Lytic Agents. PMID:33925816
Progesterone suppresses the progression of colonic carcinoma by increasing the activity of the GADD45α/JNK/c‑Jun signalling pathway. PMID:33846816
Immune Monitoring for Advanced Cell Therapy Trials in Transplantation: Which Assays and When? PMID:33841448
T cell assays differentiate clinical and subclinical SARS-CoV-2 infections from cross-reactive antiviral responses. PMID:33824342
Inhibition of Potassium Channels Affects the Ability of Pig Spermatozoa to Elicit Capacitation and Trigger the Acrosome Exocytosis Induced by Progesterone. PMID:33671466
Flow-FISH Using Nucleic Acid Mimic Probes for the Detection of Bacteria. PMID:33576995
The effect of fingolimod on regulatory T cells in a mouse model of brain ischaemia. PMID:33516262
Computational Analysis of Microbial Flow Cytometry Data. PMID:33468704
The Effects of Red Light on Mammalian Sperm Rely upon the Color of the Straw and the Medium Used. PMID:33429933
The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. PMID:33413071
Flow Cytometry Analysis of Circulating Extracellular Vesicle Subtypes from Fresh Peripheral Blood Samples. PMID:33374539
Red LED Light Acts on the Mitochondrial Electron Chain of Donkey Sperm and Its Effects Depend on the Time of Exposure to Light. PMID:33365309
Different approaches for assessing sperm function. PMID:33299480
SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery. PMID:33268350
Red LED Light Acts on the Mitochondrial Electron Chain of Mammalian Sperm via Light-Time Exposure-Dependent Mechanisms. PMID:33256077
Critical Steps in Data Management During a Crisis. PMID:33197114
A Higher Abundance of O-Linked Glycans Confers a Selective Advantage to High Fertile Buffalo Spermatozoa for Immune-Evasion From Neutrophils. PMID:32983120
Data File Standard for Flow Cytometry, Version FCS 3.2. PMID:32881398
Red-Light Irradiation of Horse Spermatozoa Increases Mitochondrial Activity and Motility through Changes in the Motile Sperm Subpopulation Structure. PMID:32872467
Improvement of in vitro fertilization by a tannin rich vegetal extract addition to frozen thawed boar sperm. PMID:32714455
Effects of Roundup and its main component, glyphosate, upon mammalian sperm function and survival. PMID:32620848
Longitudinal immune cell monitoring identified CD14++ CD16+ intermediate monocyte as a marker of relapse in patients with ANCA-associated vasculitis. PMID:32546274
Fluorescence and Light Scatter Calibration Allow Comparisons of Small Particle Data in Standard Units across Different Flow Cytometry Platforms and Detector Settings. PMID:32476280
Editorial: Application of Cytometry in Primary Immunodeficiencies. PMID:32265921
Immune Phenotype and Functionality of Mtb-Specific T-Cells in HIV/TB Co-Infected Patients on Antiretroviral Treatment. PMID:32131556
MIFlowCyt-EV: a framework for standardized reporting of extracellular vesicle flow cytometry experiments. PMID:32128070
Neutrophil Subsets in Periodontal Health and Disease: A Mini Review. PMID:31998301
Immune monitoring using mass cytometry and related high-dimensional imaging approaches. PMID:31892734
Polarized light therapy: Shining a light on the mechanism underlying its immunomodulatory effects. PMID:31816155
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). PMID:31633216
Systematic Review and Meta-Analysis: Accuracy of Both Gamma Delta+ Intraepithelial Lymphocytes and Coeliac Lymphogram Evaluated by Flow Cytometry for Coeliac Disease Diagnosis. PMID:31443602
Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report. PMID:31368812
Microbial life cycles link global modularity in regulation to mosaic evolution. PMID:31332330
Reporting and connecting cell type names and gating definitions through ontologies. PMID:31272390
Single-cell technologies in reproductive immunology. PMID:31206899
Quantifying the Dynamics of Hematopoiesis by In Vivo IdU Pulse-Chase, Mass Cytometry, and Mathematical Modeling. PMID:31150166
Data-Driven Flow Cytometry Analysis. PMID:31077110
Diabetes alters immune response patterns to acute melioidosis in humans. PMID:31032897
Dynamic molecular changes during the first week of human life follow a robust developmental trajectory. PMID:30862783
Single Cell Based Phosphorylation Profiling Identifies Alterations in Toll-Like Receptor 7 and 9 Signaling in Patients With Primary Sjögren's Syndrome. PMID:30846988
Are These Cardiomyocytes? Protocol Development Reveals Impact of Sample Preparation on the Accuracy of Identifying Cardiomyocytes by Flow Cytometry. PMID:30686762
MLH1 enhances the sensitivity of human endometrial carcinoma cells to cisplatin by activating the MLH1/c-Abl apoptosis signaling pathway. PMID:30594176
The Computational article format: Software as a research output. PMID:30551258
CytoML for cross-platform cytometry data sharing. PMID:30551257
A standardized immune phenotyping and automated data analysis platform for multicenter biomarker studies. PMID:30518691
Identifying Therapeutic Targets for Sepsis Research: A Characterization Study of the Inflammatory Players in the Cecal Ligation and Puncture Model. PMID:30174555
A guideline for reporting experimental protocols in life sciences. PMID:29868256
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). PMID:29791771
Improving communication for interdisciplinary teams working on storage of digital information in DNA. PMID:29707196
Aberrant cell signalling in PBMCs upon IFN-α stimulation in primary Sjögren's syndrome patients associates with type I interferon signature. PMID:29604049
Updating the MISEV minimal requirements for extracellular vesicle studies: building bridges to reproducibility. PMID:29184626
Heat Stress Reduces Sperm Motility via Activation of Glycogen Synthase Kinase-3α and Inhibition of Mitochondrial Protein Import. PMID:29018353
Use of Recombinant Mucin Glycoprotein to Assess the Interaction of the Gastric Pathogen Helicobacter pylori with the Secreted Human Mucin MUC5AC. PMID:28952513
Extracellular Vesicle Flow Cytometry Analysis and Standardization. PMID:28913335
Antibacterial Activity of Commercial Dentine Bonding Systems against E. faecalis-Flow Cytometry Study. PMID:28772841
Data-driven programmatic approach to analysis of basophil activation tests. PMID:28618453
Road map for the clinical application of the basophil activation test in food allergy. PMID:28618090
In vitro T lymphocyte proliferation by carboxyfluorescein diacetate succinimidyl ester method is helpful in diagnosing and managing primary immunodeficiencies. PMID:28383134
Effect of prolonged freezing of semen on exosome recovery and biologic activity. PMID:28338013
Oxidative stress, metabolomics profiling, and mechanism of local anesthetic induced cell death in yeast. PMID:28236766
Validation of biomarkers to predict response to immunotherapy in cancer: Volume I - pre-analytical and analytical validation. PMID:27895917
High standards for high dimensional investigations. PMID:27662608
Total cellular protein presence of the transcription factor IRF8 does not necessarily correlate with its nuclear presence. PMID:27582125
Quantifying MHC dextramer-induced NFAT activation in antigen-specific T cells as a functional response parameter. PMID:27327144
Computational flow cytometry: helping to make sense of high-dimensional immunology data. PMID:27320317
Specific LED-based red light photo-stimulation procedures improve overall sperm function and reproductive performance of boar ejaculates. PMID:26931070
CD4+CD25+Foxp3+ T regulatory cells, Th1 (CCR5, IL-2, IFN-γ) and Th2 (CCR4, IL-4, Il-13) type chemokine receptors and intracellular cytokines in children with common variable immunodeficiency. PMID:26684629
Distinct immune signatures in the colon of Crohn's disease and ankylosing spondylitis patients in the absence of inflammation. PMID:26647966
Molecular characterisation of plasma membrane-derived vesicles. PMID:26259622
A far-red fluorescent probe for flow cytometry and image-based functional studies of xenobiotic sequestering macrophages. PMID:26109497
Managing Multi-center Flow Cytometry Data for Immune Monitoring. PMID:26085786
Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data. PMID:25979346
A Clinical and Laboratory Approach to the Evaluation of Innate Immunity in Pediatric CVID Patients. PMID:25964782
Antiviral Innate Immune Activation in HIV-Infected Adults Negatively Affects H1/IC31-Induced Vaccine-Specific Memory CD4+ T Cells. PMID:25924764
Cell signaling-based classifier predicts response to induction therapy in elderly patients with acute myeloid leukemia. PMID:25884949
Data analysis as a source of variability of the HLA-peptide multimer assay: from manual gating to automated recognition of cell clusters. PMID:25854580
Human B-cell and progenitor stages as determined by probability state modeling of multidimensional cytometry data. PMID:25850810
A method for identification and analysis of non-overlapping myeloid immunophenotypes in humans. PMID:25799053
Cancer immunotherapy drives implementation science in oncology. PMID:25625923
Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440. PMID:25401072
Introduction to a Special Issue of the Journal of Immunological Methods: Building global resource programs to support HIV/AIDS clinical trial studies. PMID:24910413
Ontology-supported research on vaccine efficacy, safety and integrative biological networks. PMID:24909153
Altered innate immune development in HIV-exposed uninfected infants. PMID:24732876
The increase in phosphorylation levels of serine residues of protein HSP70 during holding time at 17°C is concomitant with a higher cryotolerance of boar spermatozoa. PMID:24603527
Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces. PMID:24478124
Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium. PMID:24441472
DNA-directed assembly of antibody-fluorophore conjugates for quantitative multiparametric flow cytometry. PMID:24375983
Flow cytometry bioinformatics. PMID:24363631
Function of dynamic models in systems biology: linking structure to behaviour. PMID:24103739
Features of free software packages in flow cytometry: a comparison between four non-commercial software sources. PMID:23839300
Systems biological approaches to measure and understand vaccine immunity in humans. PMID:23796714
A harmonized approach to intracellular cytokine staining gating: Results from an international multiconsortia proficiency panel conducted by the Cancer Immunotherapy Consortium (CIC/CRI). PMID:23788464
Djeen (Database for Joomla!'s Extensible Engine): a research information management system for flexible multi-technology project administration. PMID:23742665
CD14 directs adventitial macrophage precursor recruitment: role in early abdominal aortic aneurysm formation. PMID:23537804
Critical assessment of automated flow cytometry data analysis techniques. PMID:23396282
Effects of various physical stress factors on mitochondrial function and reactive oxygen species in rat spermatozoa. PMID:23140582
Advances in human B cell phenotypic profiling. PMID:23087687
Ontogeny of Toll-like receptor mediated cytokine responses of South African infants throughout the first year of life. PMID:23028609
Subjectivity and flow cytometric variability. PMID:22531327
The Stanford Data Miner: a novel approach for integrating and exploring heterogeneous immunological data. PMID:22452993
Neonatal plasma polarizes TLR4-mediated cytokine responses towards low IL-12p70 and high IL-10 production via distinct factors. PMID:22442690
New concepts for building vocabulary for cell image ontologies. PMID:22188658
Minimum Information about a Genotyping Experiment (MIGEN). PMID:22180825
Defining the critical hurdles in cancer immunotherapy. PMID:22168571
Recommendations from the iSBTc-SITC/FDA/NCI Workshop on Immunotherapy Biomarkers. PMID:21558394
Flow cytometry data standards. PMID:21385382
A dynamical systems model for combinatorial cancer therapy enhances oncolytic adenovirus efficacy by MEK-inhibition. PMID:21379332
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
Variables to be controlled in the assessment of blood innate immune responses to Toll-like receptor stimulation. PMID:21277305
Ontogeny of Toll-like receptor mediated cytokine responses of human blood mononuclear cells. PMID:21152080
Minimal information about T cell assays: the process of reaching the community of T cell immunologists in cancer and beyond. PMID:21080166
Profound lack of interleukin (IL)-12/IL-23p40 in neonates born early in gestation is associated with an increased risk of sepsis. PMID:20977341
A model for harmonizing flow cytometry in clinical trials. PMID:20959798
Toward an ontology-based framework for clinical research databases. PMID:20460173
Identification of B cells through negative gating-An example of the MIFlowCyt standard applied. PMID:20131398
Separating stem cells by flow cytometry: reducing variability for solid tissues. PMID:19951686
Data File Standard for Flow Cytometry, version FCS 3.1. PMID:19937951
Neonatal innate TLR-mediated responses are distinct from those of adults. PMID:19917677
Publishing flow cytometry data. PMID:19915158
Characterisation of normal and cancer stem cells: one experimental paradigm for two kinds of stem cells. PMID:19644922
FuGEFlow: data model and markup language for flow cytometry. PMID:19531228
A chromatic explosion: the development and future of multiparameter flow cytometry. PMID:19137647 -
Minimum information about a flow cytometry experiment (MIFlowCyt) checklist (Numbered in accordance with MIFlowCyt 1.0 document)
PubMed citations: 2.
2 articles citing: Minimum information about a flow cytometry experiment (MIFlowCyt) checklist (Numbered in accordance with MIFlowCyt 1.0 document)
Flow Cytometric Analyses of Lymphocyte Markers in Immune Oncology: A Comprehensive Guidance for Validation Practice According to Laws and Standards. PMID:33042129
Comparability and reproducibility of biomedical data. PMID:23193203
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flow cytometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
flow cytometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: MIFlowCyt; Minimum Information about Flow Cytometry; DOI: https://doi.org/10.25504/FAIRsharing.kcnjj2; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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