R30J3F last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:34.616812

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:34.616812

Other names: ImmPort

The Immunology Database and Analysis Portal (ImmPort) data repository was created for the exploration of clinical and basic research data on immunology and associated findings. ImmPort intends to promote effective data sharing across the basic, clinical and translational research communities. It collects data both from clinical and mechanistic studies on human subjects and from immunology studies on model organisms. The ImmPort ecosystem consists of four components: private data, shared data, data analysis, and resources-for data archiving, dissemination, analyses, and reuse.

Webpage:

https://immport.org

Licence:

Name: ImmPort Data Sharing
URL: http://www.immport.org/agreement

Publications:

Publications
More detailed information about this field from each metasource.

ImmPort: disseminating data to the public for the future of immunology
PMID: 24791905
metasource: Fairsharing.org
version: FAIRsharing.org: ImmPort; Immunology Database and Analysis Portal; DOI: https://doi.org/10.25504/FAIRsharing.bpkzqp; Last edited: March 18, 2021, 10:54 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research
PMID: 29485622
metasource: Fairsharing.org
version: FAIRsharing.org: ImmPort; Immunology Database and Analysis Portal; DOI: https://doi.org/10.25504/FAIRsharing.bpkzqp; Last edited: March 18, 2021, 10:54 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:34.616812

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data
PMID: 20839340
metasource: Fairsharing.org
version: FAIRsharing.org: ImmPort; Immunology Database and Analysis Portal; DOI: https://doi.org/10.25504/FAIRsharing.bpkzqp; Last edited: March 18, 2021, 10:54 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

FCSTrans: an open source software system for FCS file conversion and data transformation
PMID: 22431383
metasource: Fairsharing.org
version: FAIRsharing.org: ImmPort; Immunology Database and Analysis Portal; DOI: https://doi.org/10.25504/FAIRsharing.bpkzqp; Last edited: March 18, 2021, 10:54 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

ImmPort: disseminating data to the public for the future of immunology PubMed citations: 335.

335 articles citing: ImmPort: disseminating data to the public for the future of immunology

Bioinformatics-Based Approach for Exploring the Immune Cell Infiltration Patterns in Alzheimer's Disease and Determining the Intervention Mechanism of Liuwei Dihuang Pill. PMID:35898725
Identification and Functional Analysis of Individual-Specific Subpathways in Lung Adenocarcinoma. PMID:35885905
Development and Verification of a Combined Immune- and Metabolism-Related Prognostic Signature for Hepatocellular Carcinoma. PMID:35874741
Identification of biomarkers related to neutrophils and two molecular subtypes of systemic lupus erythematosus. PMID:35858908
An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma. PMID:35847907
Molecular and Clinical Characterization of CD80 Expression via Large-Scale Analysis in Breast Cancer. PMID:35814211
m6A Regulator-Mediated RNA Methylation Modification Patterns Regulate the Immune Microenvironment in Osteoarthritis. PMID:35812736
PRLHR Immune Genes Associated With Tumor Mutation Burden can be Used as Prognostic Markers in Patients With Gliomas. PMID:35800054
Development of a prognostic signature based on immune-related genes and the correlation with immune microenvironment in breast cancer. PMID:35793235
Integrated Analysis of Immune-Related circRNA-miRNA-mRNA Regulatory Network in Ischemic Stroke. PMID:35785353
Prognostic Characteristics of Immune-Related Genes and the Related Regulatory Axis in Patients With Stage N+M0 Breast Cancer. PMID:35785160
Identification of an Immune-Related Prognostic Risk Model in Glioblastoma. PMID:35783263
Immune-Related LncRNAs as Prognostic Factors for Pediatric Rhabdoid Tumor of the Kidney. PMID:35756490
Construction of Immune-Related ceRNA Network in Dilated Cardiomyopathy: Based on Sex Differences. PMID:35754849
Transcriptome analysis uncovers the autophagy-mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy. PMID:35752958
Characterization of Immune-Based Molecular Subtypes and Prognostic Model in Prostate Adenocarcinoma. PMID:35741849
Construction and Validation of a Tumor Microenvironment-Based Scoring System to Evaluate Prognosis and Response to Immune Checkpoint Inhibitor Therapy in Lung Adenocarcinoma Patients. PMID:35741714
Novel Immune-Related Gene Signature for Risk Stratification and Prognosis of Survival in ER (+) and/or PR (+) and HER2 (-) Breast Cancer. PMID:35721151
Identification of a novel immune gene panel in tongue squamous cell carcinoma. PMID:35702068
Development of a Risk Predictive Model for Evaluating Immune Infiltration Status in Invasive Thyroid Carcinoma. PMID:35692574
Comprehensive analysis of the importance of PLAUR in the progression and immune microenvironment of renal clear cell carcinoma. PMID:35675366
Evaluating the tumor immune profile based on a three-gene prognostic risk model in HER2 positive breast cancer. PMID:35665772
Association of a Novel DOCK2 Mutation-Related Gene Signature With Immune in Hepatocellular Carcinoma. PMID:35620462
Identification of Immune Hub Genes Associated With Braak Stages in Alzheimer's Disease and Their Correlation of Immune Infiltration. PMID:35619939
An Immune-Related Gene Signature for Predicting Neoadjuvant Chemoradiotherapy Efficacy in Rectal Carcinoma. PMID:35603163
Intestinal Immune Development Is Accompanied by Temporal Deviation in Microbiota Composition of Newly Hatched Pigeon Squabs. PMID:35579441
Immune Subtype Profiling and Establishment of Prognostic Immune-Related lncRNA Pairs in Human Ovarian Cancer. PMID:35578596
LANCL1 as the Key Immune Marker in Neuropathic Pain. PMID:35510269
Construction of a Two-Gene Immunogenomic-Related Prognostic Signature in Lung Squamous Cell Carcinoma. PMID:35463955
Immune-related biomarkers shared by inflammatory bowel disease and liver cancer. PMID:35452485
Identification and validation of EMT-immune-related prognostic biomarkers CDKN2A, CMTM8 and ILK in colon cancer. PMID:35429970
Construction of ceRNA networks with different types of IDH1 mutation status in low-grade glioma patients. PMID:35402587
Construction of a Novel Immune-Related mRNA Signature to Predict the Prognosis and Immune Characteristics of Human Colorectal Cancer. PMID:35401707
Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma. PMID:35399509
A new nomogram model for prognosis of hepatocellular carcinoma based on novel gene signature that regulates cross-talk between immune and tumor cells. PMID:35397536
Bioinformatics analysis reveals immune prognostic markers for overall survival of colorectal cancer patients: a novel machine learning survival predictive system. PMID:35395711
Prognostic and biological role of the N-Myc downstream-regulated gene family in hepatocellular carcinoma. PMID:35321174
Systemic characterization of alternative splicing related to prognosis, immune infiltration, and drug sensitivity analysis in ovarian cancer. PMID:35282039
Immune-Related Genes for Predicting Future Kidney Graft Loss: A Study Based on GEO Database. PMID:35281025
An Immune-Related Gene Pair Index Predicts Clinical Response and Survival Outcome of Immune Checkpoint Inhibitors in Melanoma. PMID:35280982
Establishment and validation of a novel immune-related prognostic signature in malignant pleural mesothelioma. PMID:35280360
ImmuneData: an integrated data discovery system for immunology data repositories. PMID:35262674
Identification and Comprehensive Analysis of FREM2 Mutation as a Potential Prognostic Biomarker in Colorectal Cancer. PMID:35252356
Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer. PMID:35236887
Exploration of Potential Integrated Models of N6-Methyladenosine Immunity in Systemic Lupus Erythematosus by Bioinformatic Analyses. PMID:35197962
A Risk Score Signature Consisting of Six Immune Genes Predicts Overall Survival in Patients with Lower-Grade Gliomas. PMID:35186111
Identification of Prognostic lncRNA Related to the Immune Microenvironment of Soft Tissue Sarcoma. PMID:35155682
A novel 4 immune-related genes as diagnostic markers and correlated with immune infiltrates in major depressive disorder. PMID:35152883
A novel immune-related RNA-binding proteins signature to predict survival and therapeutic responses in prostate cancer. PMID:35143037
Prediction of New Risk Genes and Potential Drugs for Rheumatoid Arthritis from Multiomics Data. PMID:35140805
The Potential Bioactive Components of Nine TCM Prescriptions Against COVID-19 in Lung Cancer Were Explored Based on Network Pharmacology and Molecular Docking. PMID:35127768
Identification of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma Based on Dysregulated Immune LncRNAs. PMID:35126519
Identification of Liver Immune Microenvironment-Related Hub Genes in Liver of Biliary Atresia. PMID:35111704
Immune Signature-Based Risk Stratification and Prediction of Immunotherapy Efficacy for Bladder Urothelial Carcinoma. PMID:35004839
Blood transcriptome analysis revealed the immune changes and immunological adaptation of wildness training giant pandas. PMID:34985592
Immunological and prognostic significance of novel ferroptosis-related genes in soft tissue sarcoma. PMID:34982796
Development and Validation of an Immune-Related Signature for the Prediction of Recurrence Risk of Patients With Laryngeal Cancer. PMID:34976784
Identification and Validation of an Immune-related Prognostic Signature for Hepatocellular Carcinoma. PMID:34966643
Diagnostic Value of Immune-Related Genes in Kawasaki Disease. PMID:34956318
Construction and Analysis of Immune Infiltration-Related ceRNA Network for Kidney Stones. PMID:34938320
TNFRSF11B Suppresses Memory CD4+ T Cell Infiltration in the Colon Cancer Microenvironment: A Multiomics Integrative Analysis. PMID:34938284
Immune Checkpoints OX40 and OX40L in Small-Cell Lung Cancer: Predict Prognosis and Modulate Immune Microenvironment. PMID:34900670
Analysis of the immune landscape in virus-induced cancers using a novel integrative mechanism discovery approach. PMID:34900135
A Novel Immune-Gene Pair Signature Revealing the Tumor Microenvironment Features and Immunotherapy Prognosis of Muscle-Invasive Bladder Cancer. PMID:34899849
Identification of Immune-Related Genes Associated With Bladder Cancer Based on Immunological Characteristics and Their Correlation With the Prognosis. PMID:34899848
Identification of a novel immune signature for optimizing prognosis and treatment prediction in colorectal cancer. PMID:34898475
Identification of Two Molecular Subtypes of Hepatocellular Carcinoma Based on Dysregulated Immune LncRNAs. PMID:34888348
S100A2 Is a Prognostic Biomarker Involved in Immune Infiltration and Predict Immunotherapy Response in Pancreatic Cancer. PMID:34887861
Identification and Validation of Prognostic Factors of Lipid Metabolism in Obstructive Sleep Apnea. PMID:34880901
LTF Regulates the Immune Microenvironment of Prostate Cancer Through JAK/STAT3 Pathway. PMID:34868909
Identification of an Immune-Related Signature Predicting Survival Risk and Immune Microenvironment in Gastric Cancer. PMID:34805135
FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows. PMID:34804056
Identification of Immune-Related Genes for Establishment of Prognostic Index in Hepatocellular Carcinoma. PMID:34796177
Development of immune gene pair-based signature predictive of prognosis and immunotherapy in esophageal cancer. PMID:34790797
Identification and Verification of Feature Immune-Related Genes in Patients With Hypertrophic Cardiomyopathy Based on Bioinformatics Analyses. PMID:34765659
ImmReg: the regulon atlas of immune-related pathways across cancer types. PMID:34755873
Development of an immune-related signature for predicting survival outcome and immunotherapy response in osteosarcoma. PMID:34747719
Immunogenomic Landscape Analysis of Prognostic Immune-Related Genes in Hepatocellular Carcinoma. PMID:34745496
Immunogenomic Analyses of the Prognostic Predictive Model for Patients With Renal Cancer. PMID:34712244
LncRNA MIAT Services as a Noninvasive Biomarker for Diagnosis and Correlated with Immune Infiltrates in Breast Cancer. PMID:34712062
Identification of Key eRNAs for Spinal Cord Injury by Integrated Multinomial Bioinformatics Analysis. PMID:34708039
Empowering study of breast cancer data with application of artificial intelligence technology: promises, challenges, and use cases. PMID:34697751
Identification of Immune Subtypes for Predicting the Prognosis of Patients in Head and Neck Squamous Cell Carcinoma. PMID:34657509
Up-regulation of S100P predicts the poor long-term survival and construction of prognostic signature for survival and immunotherapy in patients with pancreatic cancer. PMID:34654352
Construction and Validation of an Immune Cell Signature Score to Evaluate Prognosis and Therapeutic Efficacy in Hepatocellular Carcinoma. PMID:34646307
A novel tumor doubling time-related immune gene signature for prognosis prediction in hepatocellular carcinoma. PMID:34627241
Classification of Estrogen Receptor-Positive Breast Cancer Based on Immunogenomic Profiling and Validation at Single-Cell Resolution. PMID:34621742
Establishment and Validation of a Prognostic Immune Signature in Neuroblastoma. PMID:34569303
Integrative Analysis of m6A Regulator-Mediated RNA Methylation Modification Patterns and Immune Characteristics in Lupus Nephritis. PMID:34557492
Predicting the Survival and Immune Landscape of Colorectal Cancer Patients Using an Immune-Related lncRNA Pair Model. PMID:34552614
Development and validation of a PBRM1-associated immune prognostic model for clear cell renal cell carcinoma. PMID:34535962
Construction of a Prognostic Model for Hepatocellular Carcinoma Based on Immunoautophagy-Related Genes and Tumor Microenvironment. PMID:34526813
Characterization of immune landscape in papillary thyroid cancer reveals distinct tumor immunogenicity and implications for immunotherapy. PMID:34513318
A novel immune signature to predict the prognosis of patients with hepatocellular carcinoma. PMID:34414957
MAPK10 Expression as a Prognostic Marker of the Immunosuppressive Tumor Microenvironment in Human Hepatocellular Carcinoma. PMID:34408980
An immune-related prognostic signature for thyroid carcinoma to predict survival and response to immune checkpoint inhibitors. PMID:34398303
Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study. PMID:34376480
Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer. PMID:34354750
An Immune Signature Robustly Predicts Clinical Deterioration for Hepatitis C Virus-Related Early-Stage Cirrhosis Patients. PMID:34350203
Exploration of Immune-Related Gene Expression in Osteosarcoma and Association With Outcomes. PMID:34342651
Construction of Immune-Associated Nomogram for Predicting the Recurrence Survival Risk of Stage I Cervical Cancer. PMID:34337046
Construction and Validation of an Immune-Based Prognostic Model for Pancreatic Adenocarcinoma Based on Public Databases. PMID:34335699
Identification of immune-related genes that predict prognosis and risk of bladder cancer: bioinformatics analysis of TCGA database. PMID:34329197
Crosstalk between RNA-Binding Proteins and Immune Microenvironment Revealed Two RBP Regulatory Patterns with Distinct Immunophenotypes in Periodontitis. PMID:34285922
Molecular and Clinical Characterization of LAG3 in Breast Cancer Through 2994 Samples. PMID:34267742
A novel immune-related gene pair prognostic signature for predicting overall survival in bladder cancer. PMID:34266411
Molecular mechanism study of HGF/c-MET pathway activation and immune regulation for a tumor diagnosis model. PMID:34261467
Bioinformatic exploration of the immune related molecular mechanism underlying pulmonary arterial hypertension. PMID:34252346
Novel immune-related signature for risk stratification and prognosis in prostatic adenocarcinoma. PMID:34252262
FABP5, a Novel Immune-Related mRNA Prognostic Marker and a Target of Immunotherapy for Multiple Myeloma. PMID:34249967
A New Prognostic Risk Signature of Eight Ferroptosis-Related Genes in the Clear Cell Renal Cell Carcinoma. PMID:34249761
Integrative Characterization of Immune-relevant Genes in Hepatocellular Carcinoma. PMID:34221916
A Novel Immune-Related Prognostic Signature in Head and Neck Squamous Cell Carcinoma. PMID:34220923
Patterns of Immune Infiltration and the Key Immune-Related Genes in Acute Type A Aortic Dissection in Bioinformatics Analyses. PMID:34211294
SFTPA1 is a potential prognostic biomarker correlated with immune cell infiltration and response to immunotherapy in lung adenocarcinoma. PMID:34181042
Construction of lncRNA-Mediated ceRNA Network for Investigating Immune Pathogenesis of Ischemic Stroke. PMID:34173933
An Immune-Related Signature Predicted Survival in Patients With Kidney Papillary Cell Carcinoma. PMID:34164341
Tumor-associated hematopoietic stem and progenitor cells positively linked to glioblastoma progression. PMID:34162860
Identification of a Competing Endogenous RNA Network Related to Immune Signature in Lung Adenocarcinoma. PMID:34149807
Survival-associated alternative splicing events interact with the immune microenvironment in stomach adenocarcinoma. PMID:34135559
Development and validation of an individualized immune prognostic model in stage I-III lung squamous cell carcinoma. PMID:34135424
Comprehensive Profiling Reveals Distinct Microenvironment and Metabolism Characterization of Lung Adenocarcinoma. PMID:34122500
Potential Prognostic Immune Biomarkers of Overall Survival in Ovarian Cancer Through Comprehensive Bioinformatics Analysis: A Novel Artificial Intelligence Survival Prediction System. PMID:34109184
Prediction of clinical prognosis in cutaneous melanoma using an immune-related gene pair signature. PMID:34047683
Immune gene prognostic signature for disease free survival of gastric cancer: Translational research of an artificial intelligence survival predictive system. PMID:34025929
The novel immune-related genes predict the prognosis of patients with hepatocellular carcinoma. PMID:34021184
Identification and Validation of a Six Immune-Related Genes Signature for Predicting Prognosis in Patients With Stage II Colorectal Cancer. PMID:34017356
The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcoma. PMID:34016089
A Novel Set of Immune-associated Gene Signature predicts Biochemical Recurrence in Localized Prostate Cancer Patients after Radical Prostatectomy. PMID:33995646
Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer. PMID:33937319
An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma. PMID:33928021
Development and external validation of a composite immune-clinical prognostic model associated with EGFR mutation in East-Asian patients with lung adenocarcinoma. PMID:33889215
Development of a prognostic index and screening of prognosis related genes based on an immunogenomic landscape analysis of bladder cancer. PMID:33888644
Development and Validation of a Prognostic Signature Based on Immune Genes in Cervical Cancer. PMID:33842318
A novel immune-related prognostic signature in epithelial ovarian carcinoma. PMID:33819196
Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8+ T Cell Infiltration. PMID:33816550
Identification of an Immune-Related Risk Signature Correlates With Immunophenotype and Predicts Anti-PD-L1 Efficacy of Urothelial Cancer. PMID:33816497
VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms. PMID:33777032
Exploration of a Robust and Prognostic Immune Related Gene Signature for Cervical Squamous Cell Carcinoma. PMID:33748188
Preclinical analysis of novel prognostic transcription factors and immune-related gene signatures for bladder cancer via TCGA-based bioinformatic analysis. PMID:33747201
Prognostic Risk Model of Immune-Related Genes in Colorectal Cancer. PMID:33747044
Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma. PMID:33726698
m6A regulator-mediated RNA methylation modification patterns are involved in immune microenvironment regulation of periodontitis. PMID:33724691
TIGIT-related transcriptome profile and its association with tumor immune microenvironment in breast cancer. PMID:33721026
Identification of an Immune-Related Signature for Predicting Prognosis in Patients With Pancreatic Ductal Adenocarcinoma. PMID:33718118
Identification and validation of a prognostic signature and combination drug therapy for immunotherapy of head and neck squamous cell carcinoma. PMID:33717423
Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients. PMID:33671013
A signature of seven immune-related genes predicts overall survival in male gastric cancer patients. PMID:33602220
The role of an immune signature for prognosis and immunotherapy response in endometrial cancer. PMID:33594308
Identification of prognostic immune-related genes in rhabdoid tumor of kidney based on TARGET database analysis. PMID:33588380
Immune Cluster and PPI Network Analyses Identified CXCR3 as a Key Node of Immunoregulation in Head and Neck Cancer. PMID:33585188
Identification of a prognostic and therapeutic immune signature associated with hepatocellular carcinoma. PMID:33568167
Immune characteristics analysis reveals two key inflammatory factors correlated to the expressions of SARS-CoV-2 S1-specific antibodies. PMID:33521209
A novel immunogenomic prognostic signature in lung squamous carcinoma. PMID:33466167
Development of prognostic signature based on immune-related genes in muscle-invasive bladder cancer: bioinformatics analysis of TCGA database. PMID:33465047
Aging and CMV discordance are associated with increased immune diversity between monozygotic twins. PMID:33461563
Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer. PMID:33456631
Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinoma. PMID:33437203
Immune landscape and prognostic immune-related genes in KRAS-mutant colorectal cancer patients. PMID:33413474
Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors. PMID:33407583
Dysregulation of the Immune Microenvironment Contributes to Malignant Progression and Has Prognostic Value in Bladder Cancer. PMID:33392066
A TP53-Associated Immune Prognostic Signature for the Prediction of Overall Survival and Therapeutic Responses in Muscle-Invasive Bladder Cancer. PMID:33391264
Immunological analysis and differential genes screening of venous thromboembolism. PMID:33388092
Immune signature-based risk stratification and prediction of immune checkpoint inhibitor's efficacy for lung adenocarcinoma. PMID:33386920
Development of a prognostic model of glioma based on immune-related genes. PMID:33376548
Potential of Immune-Related Genes as Biomarkers for Diagnosis and Subtype Classification of Preeclampsia. PMID:33335538
Establishment of Immune-related Gene Pair Signature to Predict Lung Adenocarcinoma Prognosis. PMID:33334139
Development of an Immunogenomic Landscape-Based Prognostic Index of Head and Neck Squamous Cell Carcinoma. PMID:33330624
Molecular and Clinical Characterization of PD-1 in Breast Cancer Using Large-Scale Transcriptome Data. PMID:33329517
Identification of Metabolism-Associated Prostate Cancer Subtypes and Construction of a Prognostic Risk Model. PMID:33324566
Development of a prognostic signature for bladder cancer based on immune-related genes. PMID:33313125
Nomogram Personalizes and Visualizes the Overall Survival of Patients with Triple-Negative Breast Cancer Based on the Immune Genome. PMID:33299869
Autophagy-mediated regulation patterns contribute to the alterations of the immune microenvironment in periodontitis. PMID:33289699
Immune-Related Gene-Based Novel Subtypes to Establish a Model Predicting the Risk of Prostate Cancer. PMID:33281882
A three-gene signature based on tumour microenvironment predicts overall survival of osteosarcoma in adolescents and young adults. PMID:33281116
Development of a Predictive Immune-Related Gene Signature Associated With Hepatocellular Carcinoma Patient Prognosis. PMID:33269615
Integrative Metabolomics to Identify Molecular Signatures of Responses to Vaccines and Infections. PMID:33266347
A novel immune-related genes prognosis biomarker for hepatocellular carcinoma. PMID:33260154
Survival prediction and response to immune checkpoint inhibitors: A prognostic immune signature for hepatocellular carcinoma. PMID:33246289
Deciphering the combinatorial landscape of immunity. PMID:33225996
Construction and validation of an immunity-related prognostic signature for breast cancer. PMID:33216733
Construction of a risk signature for adrenocortical carcinoma using immune-related genes. PMID:33209656
Construction of immune-related gene pairs signature to predict the overall survival of osteosarcoma patients. PMID:33203792
Identification of two molecular subtypes of dysregulated immune lncRNAs in ovarian cancer. PMID:33203236
A 14 immune-related gene signature predicts clinical outcomes of kidney renal clear cell carcinoma. PMID:33194402
Identification and Validation of an Immunological Expression-Based Prognostic Signature in Breast Cancer. PMID:33193571
A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma. PMID:33193373
Weighted gene correlation network analysis identifies microenvironment-related genes signature as prognostic candidate for Grade II/III glioma. PMID:33186124
Identification of immune-related genes as prognostic factors in bladder cancer. PMID:33184436
Immune prognostic risk score model in acute myeloid leukemia with normal karyotype. PMID:33154778
A novel immune-related prognostic index for predicting breast cancer overall survival. PMID:33146847
Comprehensive analysis of prognostic immune-related genes associated with the tumor microenvironment of pancreatic ductal adenocarcinoma. PMID:33133266
Timely access to trial data in the context of a pandemic: the time is now. PMID:33122319
Development and validation of an immune-related gene prognostic model for stomach adenocarcinoma. PMID:33112406
An immune-related gene signature for predicting survival and immunotherapy efficacy in hepatocellular carcinoma. PMID:33089373
Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma. PMID:33072607
Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival. PMID:33072067
Identification of immune landscape signatures associated with clinical and prognostic features of hepatocellular carcinoma. PMID:33049716
Identification of a prognostic gene signature based on an immunogenomic landscape analysis of bladder cancer. PMID:33048468
Identification and validation of the prognostic value of immune-related genes in non-small cell lung cancer. PMID:33042464
Identification of a Prognostic Model Based on Immune-Related Genes of Lung Squamous Cell Carcinoma. PMID:33014809
Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer. PMID:33013820
Development of an Immune-Related Risk Signature for Predicting Prognosis in Lung Squamous Cell Carcinoma. PMID:33005178
Prognostic value of immune scores in the microenvironment of colorectal cancer. PMID:32994819
Prognostic value of immune related genes in lung adenocarcinoma. PMID:32989393
Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma. PMID:32983989
Development and Validation of a Tumor Mutation Burden-Related Immune Prognostic Model for Lower-Grade Glioma. PMID:32974146
Prognostic landscape of tumor-infiltrating immune cells and immune-related genes in the tumor microenvironment of gastric cancer. PMID:32969836
Development of a novel prognostic score combining clinicopathologic variables, gene expression, and mutation profiles for lung adenocarcinoma. PMID:32950055
Introduction to Multiparametric Flow Cytometry and Analysis of High-Dimensional Data. PMID:32926370
Development of an Immune-Related Risk Signature in Patients with Bladder Urothelial Carcinoma. PMID:32884943
Identification of an immune-related gene-based signature to predict prognosis of patients with gastric cancer. PMID:32879664
Comprehensive profiling of immune-related genes in soft tissue sarcoma patients. PMID:32873319
Integrated Genomic Characterization of the Human Immunome in Cancer. PMID:32855206
Comprehensive analysis of prognostic tumor microenvironment-related genes in osteosarcoma patients. PMID:32854645
The Potential of Five Immune-Related Prognostic Genes to Predict Survival and Response to Immune Checkpoint Inhibitors for Soft Tissue Sarcomas Based on Multi-Omic Study. PMID:32850416
Prognostic Value of Immune-Related Genes in the Tumor Microenvironment of Bladder Cancer. PMID:32850407
Seven immune-related genes prognostic power and correlation with tumor-infiltrating immune cells in hepatocellular carcinoma. PMID:32815653
Prognostic Implications of Immune-Related Genes' (IRGs) Signature Models in Cervical Cancer and Endometrial Cancer. PMID:32793281
Systems immunology: Integrating multi-omics data to infer regulatory networks and hidden drivers of immunity. PMID:32789283
Network Approaches for Dissecting the Immune System. PMID:32717640
Establishment of the prognostic index of lung squamous cell carcinoma based on immunogenomic landscape analysis. PMID:32699529
Development of an immune-related prognostic model for pediatric acute lymphoblastic leukemia patients. PMID:32666718
Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma. PMID:32624696
A Novel Immune-Related Prognostic Signature for Thyroid Carcinoma. PMID:32588760
Integrated analysis identifies an immune-based prognostic signature for the mesenchymal identity in colorectal cancer. PMID:32569190
A novel prognostic signature of immune-related genes for patients with colorectal cancer. PMID:32564470
Development and Validation of a 12-Gene Immune Relevant Prognostic Signature for Lung Adenocarcinoma Through Machine Learning Strategies. PMID:32537435
Analysis of expression differences of immune genes in non-small cell lung cancer based on TCGA and ImmPort data sets and the application of a prognostic model. PMID:32411773
Expression Profiling and Cell Type Classification Analysis in Periodontitis Reveal Dysregulation of Multiple lncRNAs in Plasma Cells. PMID:32411181
Development of a prognostic index of colon adenocarcinoma based on immunogenomic landscape analysis. PMID:32355728
Integrated Analysis Identifies an Immune-Based Prognostic Signature for the Mesenchymal Identity in Gastric Cancer. PMID:32352015
Novel Immune-Related Gene Signature for Risk Stratification and Prognosis of Survival in Lower-Grade Glioma. PMID:32351547
Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth. PMID:32322240
Identification of an immune-related signature for the prognosis of uveal melanoma. PMID:32309184
Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort. PMID:32296685
Bioinformatics Identified 17 Immune Genes as Prognostic Biomarkers for Breast Cancer: Application Study Based on Artificial Intelligence Algorithms. PMID:32296631
Transcriptome signatures from discordant sibling pairs reveal changes in peripheral blood immune cell composition in Autism Spectrum Disorder. PMID:32291385
Comprehensive immunogenomic landscape analysis of prognosis-related genes in head and neck cancer. PMID:32286381
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. PMID:32219223
Development of an immune-related prognostic index associated with hepatocellular carcinoma. PMID:32191631
Molecular classification of breast cancer using the mRNA expression profiles of immune-related genes. PMID:32179831
Establishment of a Prognostic Model Using Immune-Related Genes in Patients With Hepatocellular Carcinoma. PMID:32158466
A new immune signature for survival prediction and immune checkpoint molecules in lung adenocarcinoma. PMID:32143735
Identification and Validation of an Individualized Prognostic Signature of Bladder Cancer Based on Seven Immune Related Genes. PMID:32117435
Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus. PMID:32094927
Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers. PMID:32081859
Development and validation of a novel immune-related prognostic model in hepatocellular carcinoma. PMID:32046766
Profiles of immune cell infiltration and immune-related genes in the tumor microenvironment of osteosarcoma. PMID:32039832
Identification of an immune-related risk signature for predicting prognosis in clear cell renal cell carcinoma. PMID:32028264
IRGS: an immune-related gene classifier for lung adenocarcinoma prognosis. PMID:32019546
Open Data Revolution in Clinical Research: Opportunities and Challenges. PMID:32004409
Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types. PMID:32002550
Prediction of hepatocellular carcinoma prognosis based on expression of an immune-related gene set. PMID:31929113
Immune monitoring using mass cytometry and related high-dimensional imaging approaches. PMID:31892734
VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions. PMID:31865910
A systematic analysis of immune genes and overall survival in cancer patients. PMID:31842801
Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma. PMID:31824866
Prognostic value of immune-related genes in clear cell renal cell carcinoma. PMID:31821170
Identification of a prognostic immune signature for cervical cancer to predict survival and response to immune checkpoint inhibitors. PMID:31741756
An immune-related gene pairs signature predicts overall survival in serous ovarian carcinoma. PMID:31695415
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). PMID:31633216
Moving from Empirical to Rational Vaccine Design in the 'Omics' Era. PMID:31416125
IRNdb: the database of immunologically relevant non-coding RNAs. PMID:31414702
Laboratory mice born to wild mice have natural microbiota and model human immune responses. PMID:31371577
An immune-related gene signature predicts prognosis of gastric cancer. PMID:31277152
Development and validation of an immune-related gene pairs signature in colorectal cancer. PMID:31143520
Novel immune-risk score of gastric cancer: A molecular prediction model combining the value of immune-risk status and chemosensitivity. PMID:30945466
A pilot study showing a stronger H1N1 influenza vaccination response during pregnancy in women who subsequently deliver preterm. PMID:30852461
Identification of an immune signature predicting prognosis risk of patients in lung adenocarcinoma. PMID:30832680
Development of a prognostic index based on an immunogenomic landscape analysis of papillary thyroid cancer. PMID:30661062
A Computational Approach Identifies Immunogenic Features of Prognosis in Human Cancers. PMID:30622534
Development and validation of an immune gene-set based Prognostic signature in ovarian cancer. PMID:30594555
Construction of immune-related risk signature for renal papillary cell carcinoma. PMID:30516029
Enabling precision medicine in neonatology, an integrated repository for preterm birth research. PMID:30398470
The Immune Epitope Database (IEDB): 2018 update. PMID:30357391
The 10,000 Immunomes Project: Building a Resource for Human Immunology. PMID:30304689
Robust prediction of clinical outcomes using cytometry data. PMID:30169745
Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves. PMID:30153793
MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data. PMID:30067990
Integrating Radiosensitivity and Immune Gene Signatures for Predicting Benefit of Radiotherapy in Breast Cancer. PMID:29921729
Immune-centric network of cytokines and cells in disease context identified by computational mining of PubMed. PMID:29912209
Unique features and clinical importance of acute alloreactive immune responses. PMID:29769441
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. PMID:29688354
Rebooting Human Immunology. PMID:29490162
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. PMID:29485622
DataMed - an open source discovery index for finding biomedical datasets. PMID:29346583
LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations. PMID:29325141
Cell type discovery and representation in the era of high-content single cell phenotyping. PMID:29322913
Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant. PMID:29259604
Data discovery with DATS: exemplar adoptions and lessons learned. PMID:29228196
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data. PMID:29163494
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data. PMID:29144493
xCell: digitally portraying the tissue cellular heterogeneity landscape. PMID:29141660
Guidelines for the use of flow cytometry and cell sorting in immunological studies. PMID:29023707
Big data management challenges in health research-a literature review. PMID:28968677
Transcriptomic Signatures of Tacaribe Virus-Infected Jamaican Fruit Bats. PMID:28959737
Precision annotation of digital samples in NCBI's gene expression omnibus. PMID:28925997
Development and Validation of an Individualized Immune Prognostic Signature in Early-Stage Nonsquamous Non-Small Cell Lung Cancer. PMID:28687838
Immune Escape in Breast Cancer During In Situ to Invasive Carcinoma Transition. PMID:28652380
Predicting structured metadata from unstructured metadata. PMID:28637268
Investigating the neuroimmunogenic architecture of schizophrenia. PMID:28485405
Drug repurposing from the perspective of pharmaceutical companies. PMID:28369768
Better living through ontologies at the Immune Epitope Database. PMID:28365732
The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires. PMID:28264647
Big and disparate data: considerations for pediatric consortia. PMID:28134706
RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data. PMID:28057685
Solving Immunology? PMID:27986392
Human immune system variation. PMID:27916977
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. PMID:27899649
Differentiated regulation of immune-response related genes between LUAD and LUSC subtypes of lung cancers. PMID:27863400
Systematic Analysis of Cell-to-Cell Expression Variation of T Lymphocytes in a Human Cohort Identifies Aging and Genetic Associations. PMID:27851916
RNA-Seq Transcriptomic Responses of Full-Thickness Dermal Excision Wounds to Pseudomonas aeruginosa Acute and Biofilm Infection. PMID:27792773
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. PMID:27766961
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. PMID:27627881
Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves. PMID:27515123
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Computational genomics tools for dissecting tumour-immune cell interactions. PMID:27376489
Seasonal immunoregulation in a naturally-occurring vertebrate. PMID:27189372
G-DOC Plus - an integrative bioinformatics platform for precision medicine. PMID:27130330
An interaction quantitative trait loci tool implicates epistatic functional variants in an apoptosis pathway in smallpox vaccine eQTL data. PMID:27052692
DO CANCER CLINICAL TRIAL POPULATIONS TRULY REPRESENT CANCER PATIENTS? A COMPARISON OF OPEN CLINICAL TRIALS TO THE CANCER GENOME ATLAS. PMID:26776196
Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. PMID:26682988
Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression. PMID:26661719
Antiviral innate immunity through the lens of systems biology. PMID:26657882
Opening clinical trial data: are the voluntary data-sharing portals enough? PMID:26560699
Reanalysis of the Rituximab in ANCA-Associated Vasculitis trial identifies granulocyte subsets as a novel early marker of successful treatment. PMID:26387933
Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. PMID:26362267
An Introduction to Automated Flow Cytometry Gating Tools and Their Implementation. PMID:26284066
The center for expanded data annotation and retrieval. PMID:26112029
The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding. PMID:26107960
Vaccinology in the era of high-throughput biology. PMID:25964458
Systems vaccinology: Enabling rational vaccine design with systems biological approaches. PMID:25858860
Microbes on the edge of Occam's razor. PMID:25433677
Whole genome sequencing of SIV-infected macaques identifies candidate loci that may contribute to host control of virus replication. PMID:25418588
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research PubMed citations: 220.

220 articles citing: ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

Smoking patients with laryngeal cancer screened with a novel immunogenomics-based prognostic signature. PMID:35910213
High PANX1 Expression Leads to Neutrophil Recruitment and the Formation of a High Adenosine Immunosuppressive Tumor Microenvironment in Basal-like Breast Cancer. PMID:35884429
Construction of circRNA-Mediated Immune-Related ceRNA Network and Identification of Circulating circRNAs as Diagnostic Biomarkers in Acute Ischemic Stroke. PMID:35873383
Single-cell RNA sequencing reveals the potential mechanism of heterogeneity of immunomodulatory properties of foreskin and umbilical cord mesenchymal stromal cells. PMID:35869528
Identification of Key Carcinogenic Genes in Colon Adenocarcinoma. PMID:35866125
An Immune-Related Gene Signature Can Predict Clinical Outcomes and Immunotherapeutic Response in Oral Squamous Cell Carcinoma. PMID:35860473
Tumor antigens and immune subtypes of glioblastoma: the fundamentals of mRNA vaccine and individualized immunotherapy development. PMID:35855914
Bioinformatics analysis identifies diagnostic biomarkers and their correlation with immune infiltration in diabetic nephropathy. PMID:35845512
Pan-sarcoma characterization of lncRNAs in the crosstalk of EMT and tumour immunity identifies distinct clinical outcomes and potential implications for immunotherapy. PMID:35842562
Association of Intratumoral Microbiota With Prognosis in Patients With Nasopharyngeal Carcinoma From 2 Hospitals in China. PMID:35834269
Transcriptional regulatory networks of circulating immune cells in type 1 diabetes: A community knowledgebase. PMID:35832893
Identification of Survival Risk and Immune-Related Characteristics of Kidney Renal Clear Cell Carcinoma. PMID:35832648
Bulk RNA Sequencing With Integrated Single-Cell RNA Sequencing Identifies BCL2A1 as a Potential Diagnostic and Prognostic Biomarker for Sepsis. PMID:35832273
Pancreatic adenocarcinoma associated immune-gene signature as a novo risk factor for clinical prognosis prediction in hepatocellular carcinoma. PMID:35831362
Plac1 Remodels the Tumor Immune Evasion Microenvironment and Predicts Therapeutic Response in Head and Neck Squamous Cell Carcinoma. PMID:35814442
Identification of Immune-Related Gene Signature in Stanford Type A Aortic Dissection. PMID:35795203
Mission, Organization, and Future Direction of the Serological Sciences Network for COVID-19 (SeroNet) Epidemiologic Cohort Studies. PMID:35765315
Characterization of Immune-Based Molecular Subtypes and Prognostic Model in Prostate Adenocarcinoma. PMID:35741849
Identification of Tumor Antigens and Immune Subtypes of Esophageal Squamous Cell Carcinoma for mRNA Vaccine Development. PMID:35734437
Bioinformatics-Led Discovery of Osteoarthritis Biomarkers and Inflammatory Infiltrates. PMID:35734177
Dynamics of Type I and Type II Interferon Signature Determines Responsiveness to Anti-TNF Therapy in Rheumatoid Arthritis. PMID:35734167
Differential Regulation of the Immune System in Peripheral Blood Following Ischemic Stroke. PMID:35722467
Identification of Prognosis-Related Molecular Subgroups and Construction of a Prognostic Prediction Model Using Immune-Related Genes in Pancreatic Cancer. PMID:35712127
A novel immunogenomic signature to predict prognosis and reveal immune infiltration characteristics in pancreatic ductal adenocarcinoma. PMID:35694712
ZNF384: A Potential Therapeutic Target for Psoriasis and Alzheimer's Disease Through Inflammation and Metabolism. PMID:35669784
Identification of mRNA Signature for Predicting Prognosis Risk of Rectal Adenocarcinoma. PMID:35664306
The correlation of EZH2 expression with the progression and prognosis of hepatocellular carcinoma. PMID:35659256
Identification of EMT-Related Genes and Prognostic Signature With Significant Implications on Biological Properties and Oncology Treatment of Lower Grade Gliomas. PMID:35656554
A lncRNA signature associated with tumor immune heterogeneity predicts distant metastasis in locoregionally advanced nasopharyngeal carcinoma. PMID:35637194
Analyzing single cell transcriptome data from severe COVID-19 patients. PMID:35582459
METTL3 Is Associated With the Malignancy of Esophageal Squamous Cell Carcinoma and Serves as a Potential Immunotherapy Biomarker. PMID:35574315
Comparative Analysis of Long Non-Coding RNA Expression and Immune Response in Mild and Severe COVID-19. PMID:35573725
Immune-Associated Gene Signatures and Subtypes to Predict the Progression of Atherosclerotic Plaques Based on Machine Learning. PMID:35559253
Upregulation of the Long Non-coding RNA LINC01480 Is Associated With Immune Infiltration in Coronary Artery Disease Based on an Immune-Related lncRNA-mRNA Co-expression Network. PMID:35557532
Identification of Neoantigens and Construction of Immune Subtypes in Prostate Adenocarcinoma. PMID:35547260
The Diagnostic and Predictive Significance of Immune-Related Genes and Immune Characteristics in the Occurrence and Progression of IgA Nephropathy. PMID:35528619
LANCL1 as the Key Immune Marker in Neuropathic Pain. PMID:35510269
Immunoprognostic model of lung adenocarcinoma and screening of sensitive drugs. PMID:35504892
DNA methylation profile of liver tissue in end-stage cholestatic liver disease. PMID:35473391
Development and Validation of Novel Prognostic Models for Immune-Related Genes in Osteosarcoma. PMID:35463956
Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality. PMID:35438176
A Novel Immune-Related Gene Signature Predicts Prognosis of Lung Adenocarcinoma. PMID:35437508
Up-Regulated MISP Is Associated With Poor Prognosis and Immune Infiltration in Pancreatic Ductal Adenocarcinoma. PMID:35433491
Integrative Analysis of Biomarkers and Mechanisms in Adamantinomatous Craniopharyngioma. PMID:35432485
A novel ceRNA-immunoregulatory axis based on immune cell infiltration in ulcerative colitis-associated colorectal carcinoma by integrated weighted gene co-expression network analysis. PMID:35428188
Construction Immune Related Feed-Forward Loop Network Reveals Angiotensin II Receptor Blocker as Potential Neuroprotective Drug for Ischemic Stroke. PMID:35419038
Oxidative Stress in Intervertebral Disc Degeneration: New Insights from Bioinformatic Strategies. PMID:35401932
Comprehensive Analysis of HHLA2 as a Prognostic Biomarker and Its Association With Immune Infiltrates in Hepatocellular Carcinoma. PMID:35371079
HSPB8 is a Potential Prognostic Biomarker that Correlates With Immune Cell Infiltration in Bladder Cancer. PMID:35330734
Assessment of Automated Flow Cytometry Data Analysis Tools within Cell and Gene Therapy Manufacturing. PMID:35328645
HAUS5 Is A Potential Prognostic Biomarker With Functional Significance in Breast Cancer. PMID:35280773
ImmuneData: an integrated data discovery system for immunology data repositories. PMID:35262674
Identification of a novel immune-related long noncoding RNA signature to predict the prognosis of bladder cancer. PMID:35236887
Identification of CCL19 as a Novel Immune-Related Biomarker in Diabetic Nephropathy. PMID:35222545
A Ferroptosis-Related Gene Prognostic Index to Predict Temozolomide Sensitivity and Immune Checkpoint Inhibitor Response for Glioma. PMID:35174170
Identification of an immune gene-associated prognostic signature in patients with bladder cancer. PMID:35169299
Dual RNA Sequencing of Mycobacterium tuberculosis-Infected Human Splenic Macrophages Reveals a Strain-Dependent Host-Pathogen Response to Infection. PMID:35163725
A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC. PMID:35145542
Multi-Omics Profiling Suggesting Intratumoral Mast Cells as Predictive Index of Breast Cancer Lung Metastasis. PMID:35111673
Identification and Validation of a Novel Six-lncRNA-Based Prognostic Model for Lung Adenocarcinoma. PMID:35111670
Bioinformatics analysis and identification of hub genes and immune-related molecular mechanisms in chronic myeloid leukemia. PMID:35111390
Chrysin, which targets PLAU, protects PC12 cells from OGD/R-stimulated damage through repressing the NF-κB signaling pathway. PMID:35097165
Identification of Tumor Antigens and Immune Subtypes for the Development of mRNA Vaccines and Individualized Immunotherapy in Soft Tissue Sarcoma. PMID:35053609
Application of Machine Learning for Cytometry Data. PMID:35046945
Guidelines for standardizing T-cell cytometry assays to link biomarkers, mechanisms, and disease outcomes in type 1 diabetes. PMID:35025103
Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma. PMID:34993138
Integrative analysis of CRISPR screening data uncovers new opportunities for optimizing cancer immunotherapy. PMID:34980132
An Immune-Related Prognostic Signature for Predicting Clinical Outcomes and Immune Landscape in IDH-Mutant Lower-Grade Gliomas. PMID:34961815
Intersection of Epigenetic and Immune Alterations: Implications for Fetal Alcohol Spectrum Disorder and Mental Health. PMID:34924946
Integrative analysis of immune-related multi-omics profiles identifies distinct prognosis and tumor microenvironment patterns in osteosarcoma. PMID:34894177
A Prognostic Signature of Glycolysis-Related Long Noncoding RNAs for Molecular Subtypes in the Tumor Immune Microenvironment of Lung Adenocarcinoma. PMID:34866936
treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data. PMID:34844647
Identification of Immunological Biomarkers of Atopic Dermatitis by Integrated Analysis to Determine Molecular Targets for Diagnosis and Therapy. PMID:34815693
Exploration of the Tumor Mutational Burden as a Prognostic Biomarker and Related Hub Gene Identification in Prostate Cancer. PMID:34806485
Expression of Immune Related Genes and Possible Regulatory Mechanisms in Alzheimer's Disease. PMID:34804058
FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows. PMID:34804056
Establishment and verification of a prognostic tumor microenvironment-based and immune-related gene signature in colon cancer. PMID:34790383
Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study. PMID:34764953
Mechanistic Insight Into the Regulation of Immune-Related Genes Expression in Autism Spectrum Disorder. PMID:34746237
Correlation of MKI67 with prognosis, immune infiltration, and T cell exhaustion in hepatocellular carcinoma. PMID:34724892
Development of a prognostic signature of patients with esophagus adenocarcinoma by using immune-related genes. PMID:34724890
Construction and Validation of an Immune-Related Gene Prognostic Index for Esophageal Squamous Cell Carcinoma. PMID:34722771
A linked data graph approach to integration of immunological data. PMID:34707915
Development and Verification of an Immune-Related Gene Pairs Prognostic Signature in Hepatocellular Carcinoma. PMID:34660693
Characterization of Molecular Heterogeneity Associated With Tumor Microenvironment in Clear Cell Renal Cell Carcinoma to Aid Immunotherapy. PMID:34631713
Identification of an Immune-Related Long Noncoding RNA Pairs Model to Predict Survival and Immune Features in Gastric Cancer. PMID:34621744
Exploration of the prognostic signature reflecting tumor microenvironment of lung adenocarcinoma based on immunologically relevant genes. PMID:34612148
A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma. PMID:34610582
Identification of Transcription Factor-Related Gene Signature and Risk Score Model for Colon Adenocarcinoma. PMID:34603375
A novel immune subtype classification of ER-positive, PR-negative and HER2-negative breast cancer based on the genomic and transcriptomic landscape. PMID:34544424
Identification and validation of a novel immune-related signature associated with macrophages and CD8 T cell infiltration predicting overall survival for hepatocellular carcinoma. PMID:34544391
A novel recurrence associated immune gene signature and its clinical significance in liver cancer. PMID:34539993
STC1 is a Novel Biomarker Associated with Immune Characteristics and Prognosis of Bladder Cancer. PMID:34539184
The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting. PMID:34491982
Reconstruction of the Cytokine Signaling in Lysosomal Storage Diseases by Literature Mining and Network Analysis. PMID:34490253
Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma. PMID:34488768
Single-cell transcriptome identifies FCGR3B upregulated subtype of alveolar macrophages in patients with critical COVID-19. PMID:34458692
ImmuCellDB: An Indicative Database of Immune Cell Composition From Different Tissues and Disease Conditions in Mouse and Human. PMID:34456903
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature. PMID:34454610
Epigenetic promoter alterations in GI tumour immune-editing and resistance to immune checkpoint inhibition. PMID:34433583
LinkedImm: a linked data graph database for integrating immunological data. PMID:34433410
Identification of fibronectin 1 (FN1) and complement component 3 (C3) as immune infiltration-related biomarkers for diabetic nephropathy using integrated bioinformatic analysis. PMID:34424825
CD86 Molecule Might Be a Novel Immune-Related Prognostic Biomarker for Patients With Bladder Cancer by Bioinformatics and Experimental Assays. PMID:34422632
CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma. PMID:34405225
An immune cell infiltration-related gene signature predicts prognosis for bladder cancer. PMID:34404901
Transcriptome Analysis of Peripheral Blood Mononuclear Cells Reveals Distinct Immune Response in Asymptomatic and Re-Detectable Positive COVID-19 Patients. PMID:34394120
The Immune Heterogeneity Between Pulmonary Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Analysis Based on lncRNA Model. PMID:34394068
Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune-related lncRNA. PMID:34378851
Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study. PMID:34376480
Effects of 1p/19q Codeletion on Immune Phenotype in Low Grade Glioma. PMID:34335194
Identification of immune-related genes that predict prognosis and risk of bladder cancer: bioinformatics analysis of TCGA database. PMID:34329197
Transcriptome analysis of porcine PBMCs reveals lipopolysaccharide-induced immunomodulatory responses and crosstalk of immune and glucocorticoid receptor signaling. PMID:34288827
An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma. PMID:34285140
Correlation between vascular endothelial growth factor pathway and immune microenvironment in head and neck squamous cell carcinoma. PMID:34284746
PLXNC1: A Novel Potential Immune-Related Target for Stomach Adenocarcinoma. PMID:34277610
Transcriptome Analysis of Microglia Reveals That the TLR2/IRF7 Signaling Axis Mediates Neuroinflammation After Subarachnoid Hemorrhage. PMID:34276335
ADEIP: an integrated platform of age-dependent expression and immune profiles across human tissues. PMID:34254996
Analyzing high-dimensional cytometry data using FlowSOM. PMID:34172973
Gene Expression Profiling of Lymph Node Sub-Capsular Sinus Macrophages in Cancer. PMID:34168645
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
Integrated Analysis of Cell Cycle-Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma. PMID:34150632
Construction of a five-gene prognostic model based on immune-related genes for the prediction of survival in pancreatic cancer. PMID:34143198
Identification and Validation of Immune-Related Gene Signature for Predicting Lymph Node Metastasis and Prognosis in Lung Adenocarcinoma. PMID:34109216
Establishment and experimental validation of an immune miRNA signature for assessing prognosis and immune landscape of patients with colorectal cancer. PMID:34101338
Systems Immunology: Revealing Influenza Immunological Imprint. PMID:34065617
Identification of immune subtypes of cervical squamous cell carcinoma predicting prognosis and immunotherapy responses. PMID:34030694
Downregulation of USP18 reduces tumor-infiltrating activated dendritic cells in extranodal diffuse large B cell lymphoma patients. PMID:34001679
Leptin receptor is a key gene involved in the immunopathogenesis of thyroid-associated ophthalmopathy. PMID:33988300
Combination of Immune-Related Genomic Alterations Reveals Immune Characterization and Prediction of Different Prognostic Risks in Ovarian Cancer. PMID:33968933
A cloud-based bioinformatic analytic infrastructure and Data Management Core for the Expanded Program on Immunization Consortium. PMID:33948273
Opportunities and Challenges in Democratizing Immunology Datasets. PMID:33936065
Development of a prognostic index and screening of prognosis related genes based on an immunogenomic landscape analysis of bladder cancer. PMID:33888644
The Use of Multiplexing to Identify Cytokine and Chemokine Networks in the Immune-Inflammatory Response to Trauma. PMID:33860683
Gene expression and immune infiltration in melanoma patients with different mutation burden. PMID:33836680
Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma. PMID:33789609
Screening of osteoarthritis diagnostic markers based on immune-related genes and immune infiltration. PMID:33782454
Prognostic Signature of Immune Genes and Immune-Related LncRNAs in Neuroblastoma: A Study Based on GEO and TARGET Datasets. PMID:33767996
Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis. PMID:33732554
Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid. PMID:33717060
The Changes of Leukocytes in Brain and Blood After Intracerebral Hemorrhage. PMID:33659003
Identification of an Immune Gene-Associated Prognostic Signature and Its Association With a Poor Prognosis in Gastric Cancer Patients. PMID:33628738
Development of a prognostic signature for esophageal cancer based on nine immune related genes. PMID:33541291
Immune cell infiltration landscape and immune marker molecular typing in preeclampsia. PMID:33535891
Development of a prognostic index based on immunogenomic landscape analysis in glioma. PMID:33503296
An Immune-Related Gene Panel for Preoperative Lymph Node Status Evaluation in Advanced Gastric Cancer. PMID:33490257
Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma. PMID:33466212
Aging and CMV discordance are associated with increased immune diversity between monozygotic twins. PMID:33461563
A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling. PMID:33429364
Network- and systems-based re-engineering of dendritic cells with non-coding RNAs for cancer immunotherapy. PMID:33391542
Prognostic Model of Colorectal Cancer Constructed by Eight Immune-Related Genes. PMID:33330631
Increased NFATC4 Correlates With Poor Prognosis of AML Through Recruiting Regulatory T Cells. PMID:33329712
Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma. PMID:33292199
Immune-Related Gene-Based Novel Subtypes to Establish a Model Predicting the Risk of Prostate Cancer. PMID:33281882
Integrative Metabolomics to Identify Molecular Signatures of Responses to Vaccines and Infections. PMID:33266347
Immune-related gene data-based molecular subtyping related to the prognosis of breast cancer patients. PMID:33245478
Development and validation of a prognostic and immunotherapeutically relevant model in hepatocellular carcinoma. PMID:33241026
Immune-related lncRNAs as predictors of survival in breast cancer: a prognostic signature. PMID:33225954
A signature of 17 immune-related gene pairs predicts prognosis and immune status in HNSCC patients. PMID:33221687
Identification of an Immune-Related Prognostic Predictor in Hepatocellular Carcinoma. PMID:33195412
The Landscape of Immune Cells Infiltrating in Prostate Cancer. PMID:33194581
Establishment of an immune-related gene pair model to predict colon adenocarcinoma prognosis. PMID:33167940
A signature of 18 immune-related gene pairs to predict the prognosis of pancreatic cancer patients. PMID:33128857
Immune infiltration and immune gene signature predict the response to fluoropyrimidine-based chemotherapy in colorectal cancer patients. PMID:33117604
Development of an immunogenomic landscape for the competing endogenous RNAs network of peri-implantitis. PMID:33081707
Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma. PMID:33072607
Identification of an Immune-Related Prognostic Signature Associated With Immune Infiltration in Melanoma. PMID:33005180
Systematic analysis of immune-related genes based on a combination of multiple databases to build a diagnostic and a prognostic risk model for hepatocellular carcinoma. PMID:32989553
Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer. PMID:32973887
An immune-related gene signature for determining Ewing sarcoma prognosis based on machine learning. PMID:32968877
Molecular subtyping of glioblastoma based on immune-related genes for prognosis. PMID:32968155
Origins of atrophy in Parkinson linked to early onset and local transcription patterns. PMID:32954322
Introduction to Multiparametric Flow Cytometry and Analysis of High-Dimensional Data. PMID:32926370
Three-dimensional facial-image analysis to predict heterogeneity of the human ageing rate and the impact of lifestyle. PMID:32895578
Identification of 12 immune-related lncRNAs and molecular subtypes for the clear cell renal cell carcinoma based on RNA sequencing data. PMID:32879362
Systems Biology Approaches to Understanding the Human Immune System. PMID:32849587
A robust and interpretable end-to-end deep learning model for cytometry data. PMID:32801215
A Prognostic Model Based on the Immune-related Genes in Colon Adenocarcinoma. PMID:32788867
Eight immune-related genes predict survival outcomes and immune characteristics in breast cancer. PMID:32756008
A modular framework for the development of targeted Covid-19 blood transcript profiling panels. PMID:32736569
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq. PMID:32719530
TOX correlates with prognosis, immune infiltration, and T cells exhaustion in lung adenocarcinoma. PMID:32700817
Current Challenges in Vaccinology. PMID:32670279
Robust FCS Parsing: Exploring 211,359 Public Files. PMID:32633075
Prediction and identification of immune genes related to the prognosis of patients with colon adenocarcinoma and its mechanisms. PMID:32600423
Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma. PMID:32579175
Identification of Altered miRNAs in Cerumen of Dogs Affected by Otitis Externa. PMID:32547539
Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer. PMID:32508884
Molecular basis of mood and cognitive adverse events elucidated via a combination of pharmacovigilance data mining and functional enrichment analysis. PMID:32504122
A novel proangiogenic B cell subset is increased in cancer and chronic inflammation. PMID:32426497
Identification of Prognostic Immune Genes in Bladder Urothelial Carcinoma. PMID:32420368
Resolving Clinical Phenotypes into Endotypes in Allergy: Molecular and Omics Approaches. PMID:32378146
A structured model for immune exposures. PMID:32283555
Development of a prognostic index and screening of potential biomarkers based on immunogenomic landscape analysis of colorectal cancer. PMID:32235004
Multi-Dimensional Flow Cytometry Analyses Reveal a Dichotomous Role for Nitric Oxide in Melanoma Patients Receiving Immunotherapy. PMID:32161584
A new immune signature for survival prediction and immune checkpoint molecules in lung adenocarcinoma. PMID:32143735
Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers. PMID:32081859
Open Data Revolution in Clinical Research: Opportunities and Challenges. PMID:32004409
The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan-cancer. PMID:31927791
An Immune-Related Signature Predicts Survival in Patients With Lung Adenocarcinoma. PMID:31921619
Microarray Gene Expression Dataset Re-analysis Reveals Variability in Influenza Infection and Vaccination. PMID:31787983
Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. PMID:31722210
Transcriptome analysis of dog oral melanoma and its oncogenic analogy with human melanoma. PMID:31661138
The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system. PMID:31636302
Papillary Thyroid Carcinoma Variants are Characterized by Co-dysregulation of Immune and Cancer Associated Genes. PMID:31443155
Regional transcriptional architecture of Parkinson's disease pathogenesis and network spread. PMID:31359041
Computational approaches for characterizing the tumor immune microenvironment. PMID:31347163
Integrative Approaches to Cancer Immunotherapy. PMID:31311655
Reporting and connecting cell type names and gating definitions through ontologies. PMID:31272390
Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies. PMID:31272374
Immunomics in Pediatric Rheumatic Diseases. PMID:31231652
SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses. PMID:31201239
The Pregnancy Pickle: Evolved Immune Compensation Due to Pregnancy Underlies Sex Differences in Human Diseases. PMID:31200807
Assessment of Postdonation Outcomes in US Living Kidney Donors Using Publicly Available Data Sets. PMID:30977847
A pilot study showing a stronger H1N1 influenza vaccination response during pregnancy in women who subsequently deliver preterm. PMID:30852461
Prototype of running clinical trials in an untrustworthy environment using blockchain. PMID:30796226
MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in human cancers. PMID:30721153
Elucidating the Interaction of CF Airway Epithelial Cells and Rhinovirus: Using the Host-Pathogen Relationship to Identify Future Therapeutic Strategies. PMID:30464745
Enabling precision medicine in neonatology, an integrated repository for preterm birth research. PMID:30398470
Robust prediction of clinical outcomes using cytometry data. PMID:30169745
Open data informatics and data repurposing for IBD. PMID:30061595
Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data PubMed citations: 94.

94 articles citing: Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

Co-Expression of the B-Cell Key Transcription Factors Blimp-1 and IRF4 Identifies Plasma Cells in the Pig. PMID:35464468
Assessment of Automated Flow Cytometry Data Analysis Tools within Cell and Gene Therapy Manufacturing. PMID:35328645
Autologous Dendritic Cells in Combination With Chemotherapy Restore Responsiveness of T Cells in Breast Cancer Patients: A Single-Arm Phase I/II Trial. PMID:34489928
Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph and binary-coded genomic data. PMID:34382087
The diversity of the plasmablast signature across species and experimental conditions: A meta-analysis. PMID:34041745
Pattern of circulating SARS-CoV-2-specific antibody-secreting and memory B-cell generation in patients with acute COVID-19. PMID:33552508
optimalFlow: optimal transport approach to flow cytometry gating and population matching. PMID:33109072
Expansion of SARS-CoV-2-Specific Antibody-Secreting Cells and Generation of Neutralizing Antibodies in Hospitalized COVID-19 Patients. PMID:32878912
A robust and interpretable end-to-end deep learning model for cytometry data. PMID:32801215
Standardization procedure for flow cytometry data harmonization in prospective multicenter studies. PMID:32665668
Validation of a hybrid approach to standardize immunophenotyping analysis in large population studies: The Health and Retirement Study. PMID:32472068
Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry Data. PMID:32411698
SwiftReg cluster registration automatically reduces flow cytometry data variability including batch effects. PMID:32382076
From Bivariate to Multivariate Analysis of Cytometric Data: Overview of Computational Methods and Their Application in Vaccination Studies. PMID:32244919
PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells. PMID:31971583
Computational Analysis of Multiparametric Flow Cytometric Data to Dissect B Cell Subsets in Vaccine Studies. PMID:31710181
Machine Learning of Discriminative Gate Locations for Clinical Diagnosis. PMID:31691488
Challenges and Opportunities for Consistent Classification of Human B Cell and Plasma Cell Populations. PMID:31681331
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). PMID:31633216
Remembrance of Things Past: Long-Term B Cell Memory After Infection and Vaccination. PMID:31417562
An ontology for representing hematologic malignancies: the cancer cell ontology. PMID:31272372
Differential transcriptome and development of human peripheral plasma cell subsets. PMID:31045577
High-Throughput Analysis of Clinical Flow Cytometry Data by Automated Gating. PMID:30983860
Ultrafast clustering of single-cell flow cytometry data using FlowGrid. PMID:30953498
CytoBinning: Immunological insights from multi-dimensional data. PMID:30379838
Epstein-Barr Virus Type 2 Infects T Cells and Induces B Cell Lymphomagenesis in Humanized Mice. PMID:30089703
Understanding B-cell activation and autoantibody repertoire selection in systemic lupus erythematosus: A B-cell immunomics approach. PMID:29944759
DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data. PMID:29665244
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. PMID:29485622
Cell type discovery and representation in the era of high-content single cell phenotyping. PMID:29322913
High throughput automated analysis of big flow cytometry data. PMID:29287915
Automated Analysis of Clinical Flow Cytometry Data: A Chronic Lymphocytic Leukemia Illustration. PMID:29128077
Guidelines for the use of flow cytometry and cell sorting in immunological studies. PMID:29023707
Analyses of 123 Peripheral Human Immune Cell Subsets: Defining Differences with Age and between Healthy Donors and Cancer Patients Not Detected in Analysis of Standard Immune Cell Types. PMID:28936253
Plasma cell and serum antibody responses to influenza vaccine in preterm and full-term infants. PMID:28807607
Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells. PMID:28798746
The Antibody-Secreting Cell Response to Infection: Kinetics and Clinical Applications. PMID:28620385
Comparative exploration of multidimensional flow cytometry software: a model approach evaluating T cell polyfunctional behavior. PMID:28550117
Toward deterministic and semiautomated SPADE analysis. PMID:28234411
An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry. PMID:28069807
CellSort: a support vector machine tool for optimizing fluorescence-activated cell sorting and reducing experimental effort. PMID:27998936
Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry Samples. PMID:27630823
Increased Steady-State Memory B Cell Subsets Among High-Risk Participants in an HIV Vaccine Trial. PMID:27612555
CD4+ T cells with an activated and exhausted phenotype distinguish immunodeficiency during aviremic HIV-2 infection. PMID:27525551
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Computational flow cytometry: helping to make sense of high-dimensional immunology data. PMID:27320317
Oral Challenge with Wild-Type Salmonella Typhi Induces Distinct Changes in B Cell Subsets in Individuals Who Develop Typhoid Disease. PMID:27300136
Automated mapping of phenotype space with single-cell data. PMID:27183440
Identification of human plasma cells with a lamprey monoclonal antibody. PMID:27152361
BayesFlow: latent modeling of flow cytometry cell populations. PMID:26755197
Increased NK Cell Maturation in Patients with Acute Myeloid Leukemia. PMID:26594214
Competitive SWIFT cluster templates enhance detection of aging changes. PMID:26441030
Multidimensional Clusters of CD4+ T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection. PMID:26402620
Reanalysis of the Rituximab in ANCA-Associated Vasculitis trial identifies granulocyte subsets as a novel early marker of successful treatment. PMID:26387933
Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data. PMID:26357042
An Introduction to Automated Flow Cytometry Gating Tools and Their Implementation. PMID:26284066
Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure. PMID:26274018
Long-Lived Plasma Cells Are Contained within the CD19(-)CD38(hi)CD138(+) Subset in Human Bone Marrow. PMID:26187412
Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data. PMID:25979346
Thinking outside the gate: single-cell assessments in multiple dimensions. PMID:25902473
Polychromatic flow cytometry in evaluating rheumatic disease patients. PMID:25880288
Computational prediction of manually gated rare cells in flow cytometry data. PMID:25755118
flowCL: ontology-based cell population labelling in flow cytometry. PMID:25481008
Vaccine-induced plasmablast responses in rhesus macaques: phenotypic characterization and a source for generating antigen-specific monoclonal antibodies. PMID:25445326
A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects. PMID:25248977
Gut-Homing Conventional Plasmablasts and CD27(-) Plasmablasts Elicited after a Short Time of Exposure to an Oral Live-Attenuated Shigella Vaccine Candidate in Humans. PMID:25191323
OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis. PMID:25167361
Automated identification of stratifying signatures in cellular subpopulations. PMID:24979804
Phenotypes and distribution of mucosal memory B-cell populations in the SIV/SHIV rhesus macaque model. PMID:24814239
ImmPort: disseminating data to the public for the future of immunology. PMID:24791905
Rationale for B cell targeting in SLE. PMID:24763533
SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, part 1: algorithm design. PMID:24677621
SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, part 2: biological evaluation. PMID:24532172
Understanding health and disease with multidimensional single-cell methods. PMID:24451406
Unifying immunology with informatics and multiscale biology. PMID:24448569
Flow cytometry bioinformatics. PMID:24363631
Application of user-guided automated cytometric data analysis to large-scale immunoprofiling of invariant natural killer T cells. PMID:24191009
From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells. PMID:24039568
Studying the human immunome: the complexity of comprehensive leukocyte immunophenotyping. PMID:23975032
High-resolution temporal response patterns to influenza vaccine reveal a distinct human plasma cell gene signature. PMID:23900141
GenePattern flow cytometry suite. PMID:23822732
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. PMID:23685480
Critical assessment of automated flow cytometry data analysis techniques. PMID:23396282
Unexpected heterogeneity of multifunctional T cells in response to superantigen stimulation in humans. PMID:23333555
The polyfunctionality of human memory CD8+ T cells elicited by acute and chronic virus infections is not influenced by age. PMID:23271970
Association between magnitude of the virus-specific plasmablast response and disease severity in dengue patients. PMID:23203929
Advances in human B cell phenotypic profiling. PMID:23087687
RchyOptimyx: cellular hierarchy optimization for flow cytometry. PMID:23044634
Multiparameter flow cytometry and bioanalytics for B cell profiling in systemic lupus erythematosus. PMID:22933067
Heterogeneity of multifunctional IL-17A producing S. Typhi-specific CD8+ T cells in volunteers following Ty21a typhoid immunization. PMID:22679502
Inferring phenotypic properties from single-cell characteristics. PMID:22662133
flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding. PMID:22595209
Origin and Function of Circulating Plasmablasts during Acute Viral Infections. PMID:22566959
Decreased influenza-specific B cell responses in rheumatoid arthritis patients treated with anti-tumor necrosis factor. PMID:22177419
FCSTrans: an open source software system for FCS file conversion and data transformation PubMed citations: 7.

7 articles citing: FCSTrans: an open source software system for FCS file conversion and data transformation

DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data. PMID:29665244
Automated Analysis of Clinical Flow Cytometry Data: A Chronic Lymphocytic Leukemia Illustration. PMID:29128077
Bidirectional immune tolerance in nonmyeloablative MHC-mismatched BMT for murine β-thalassemia. PMID:28351935
flowVS: channel-specific variance stabilization in flow cytometry. PMID:27465477
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. PMID:26447924
Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure. PMID:26274018
Flow cytometry bioinformatics. PMID:24363631

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model organism
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version: FAIRsharing.org: ImmPort; Immunology Database and Analysis Portal; DOI: https://doi.org/10.25504/FAIRsharing.bpkzqp; Last edited: March 18, 2021, 10:54 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

fair
metasource: re3data.org
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allergy
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clinical research
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clinical trials
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cytometry
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data service
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immunology
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metasource: bio.tools
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infectious disease
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ontology
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proteomics
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transcriptomics
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transplantation
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vaccine
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