Analysis of the landscape of human enhancer sequences in biological databases.
PMID:35685360
Identifying and classifying goals for scientific knowledge.
PMID:34661112
ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.
PMID:34327299
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.
PMID:32652120
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.
PMID:32246132
Wikidata as a knowledge graph for the life sciences.
PMID:32180547
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes.
PMID:32034905
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.
PMID:31685817
Bovine Genome Database: new annotation tools for a new reference genome.
PMID:31647100
Challenges in the annotation of pseudoenzymes in databases: the UniProtKB approach.
PMID:31618524
A Logical Model of Homology for Comparative Biology.
PMID:31596473
The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.
PMID:31214208
Annotation of gene product function from high-throughput studies using the Gene Ontology.
PMID:30715275
Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase.
PMID:30689844
Systematics for types and effects of DNA variations.
PMID:30591019
Open Targets Platform: new developments and updates two years on.
PMID:30462303
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.
PMID:30407590
The Gene Ontology Resource: 20 years and still GOing strong.
PMID:30395331
A community-driven reconstruction of the Aspergillus niger metabolic network.
PMID:30275963
HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases.
PMID:30053237
GOATOOLS: A Python library for Gene Ontology analyses.
PMID:30022098
A new bioinformatics tool to help assess the significance of BRCA1 variants.
PMID:29996917
Using ZFIN: Data Types, Organization, and Retrieval.
PMID:29761463
ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes.
PMID:29741573
Updated regulation curation model at the Saccharomyces Genome Database.
PMID:29688362
Identification of errors in the IEDB using ontologies.
PMID:29688357
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
PMID:29186578
Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN.
PMID:28838067
Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions.
PMID:28469412
The anatomy of phenotype ontologies: principles, properties and applications.
PMID:28387809
Computer-Aided Experiment Planning toward Causal Discovery in Neuroscience.
PMID:28243197
Annotation of functional impact of voltage-gated sodium channel mutations.
PMID:28168870
From the research laboratory to the database: the Caenorhabditis elegans kinome in UniProtKB.
PMID:28159896
Open Targets: a platform for therapeutic target identification and validation.
PMID:27899665
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.
PMID:27899636
UniProt: the universal protein knowledgebase.
PMID:27899622
The neXtProt knowledgebase on human proteins: 2017 update.
PMID:27899619
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching.
PMID:27899582
The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.
PMID:27812948
Primer on the Gene Ontology.
PMID:27812933
Automated detection of discourse segment and experimental types from the text of cancer pathway results sections.
PMID:27580922
Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining.
PMID:27390860
Standardization for natural product synthetic biology.
PMID:27313083
An ontology for factors affecting tuberculosis treatment adherence behavior in sub-Saharan Africa.
PMID:27175067
The Ontology for Biomedical Investigations.
PMID:27128319
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.
PMID:27114493
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.
PMID:27011785
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.
PMID:27009807
Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors.
PMID:27003817
The UniProtKB guide to the human proteome.
PMID:26896845
An ontology for major histocompatibility restriction.
PMID:26759709
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.
PMID:26578582
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
PMID:26420834
Mouse genome annotation by the RefSeq project.
PMID:26215545
Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.
PMID:26013488
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.
PMID:25957950
The SwissLipids knowledgebase for lipid biology.
PMID:25943471
The role of ontologies in biological and biomedical research: a functional perspective.
PMID:25863278
Biochemical functional predictions for protein structures of unknown or uncertain function.
PMID:25848497
Key challenges for the creation and maintenance of specialist protein resources.
PMID:25820941
An ontology for microbial phenotypes.
PMID:25433798
The GOA database: gene Ontology annotation updates for 2015.
PMID:25378336
The complex portal--an encyclopaedia of macromolecular complexes.
PMID:25313161