Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database

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Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database

metasource: Fairsharing.org
version: None

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ITSoneDB

metasource: Fairsharing.org
version: None

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

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itsonedb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

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Other names: ITSoneDB, itsonedb

The Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database (ITSoneDB) is a collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. It is intended to provide a curated reference database aimed at ITS1-based metagenomic surveys. Each ITS1 is mapped on the NCBI reference taxonomy with its start and end positions precisely annotated. ITSoneDB has been developed in agreement to the FAIR guidelines by enabling the users to query and download its content through a simple web-interface and access relevant metadata by cross-linking to European Nucleotide Archive.

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Publications:

Publications

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ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences
PMID: 29036529

metasource: Fairsharing.org
version: None

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http://dx.doi.org/10.1093/nar/gkx855

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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http://dx.doi.org/10.1093/bib/bbs036

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

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• ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences PubMed citations: 12.

  12 articles citing: ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

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  Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes. PMID:35620097

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  Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes. PMID:34346704

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  An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. PMID:33918473

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  DNA Metabarcoding for the Characterization of Terrestrial Microbiota-Pitfalls and Solutions. PMID:33673098

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  Identification of Eukaryotic Microalgal Strains. PMID:33542589

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  A global meta-analysis of ITS rDNA sequences from material belonging to the genus Ganoderma (Basidiomycota, Polyporales) including new data from selected taxa. PMID:33304123

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  Phylogeny and character evolution in the Dacrymycetes, and systematics of Unilacrymaceae and Dacryonaemataceae fam. nov. PMID:33116340

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  PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding. PMID:32016319

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  The European Nucleotide Archive in 2019. PMID:31722421

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  MGnify: the microbiome analysis resource in 2020. PMID:31696235

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  Putative group I introns in the eukaryote nuclear internal transcribed spacers. PMID:31463775

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  Metagenomic Approaches to Investigate the Contribution of the Vineyard Environment to the Quality of Wine Fermentation: Potentials and Difficulties. PMID:29867889
• http://dx.doi.org/10.1093/nar/gkx855
• http://dx.doi.org/10.1093/bib/bbs036

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genome annotation

metasource: Fairsharing.org
version: None

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hidden markov model

metasource: Fairsharing.org
version: None

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metagenome

metasource: Fairsharing.org
version: None

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ribosomal rna

metasource: Fairsharing.org
version: None

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metagenomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.116598

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genome annotation hidden markov model metagenome ribosomal rna metagenomics