Molecular database for the identification of fungi
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Molecular database for the identification of fungi
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
UNITE
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Communication and identification of DNA based fungal species
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Unified system for the DNA based fungal species linked to the classification
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Molecular database for the identification of fungi
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
UNITE
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Communication and identification of DNA based fungal species
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Unified system for the DNA based fungal species linked to the classification
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Other names: UNITE, Communication and identification of DNA based fungal species, Unified system for the DNA based fungal species linked to the classification
Names
More detailed information about this field from each metasource.
Molecular database for the identification of fungi
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
UNITE
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Communication and identification of DNA based fungal species
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Unified system for the DNA based fungal species linked to the classification
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
UNITE is primarily a fungal rDNA internal transcribed spacer (ITS) sequence database, although they also welcome additional genes and genetic markers. UNITE focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria.
Description
More detailed information about this field from each metasource.
UNITE is primarily a fungal rDNA internal transcribed spacer (ITS) sequence database, although they also welcome additional genes and genetic markers. UNITE focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria.
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
UNITE provides unified way how you delimit, identify, communicate and work with DNA based Species Hypotheses (SH).
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Webpage:
http://unite.ut.ee/index.phpWebpage
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http://unite.ut.ee/index.php
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://unite.ut.ee/index.php
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Licence:
Name: Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Generic (CC BY-NC-ND 2.5)Licence name
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Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Generic (CC BY-NC-ND 2.5)
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
CC
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Licence URL
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https://creativecommons.org/licenses/by-nc-nd/2.5/
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://creativecommons.org/licenses/by-sa/4.0/
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Publications:
Publications
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The UNITE database for molecular identification of fungi--recent updates and future perspectives
PMID: 20409185
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
The UNITE database for molecular identification of fungi--recent updates and future perspectives
PMID: 20409185
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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The UNITE database for molecular identification of fungi--recent updates and future perspectives
PubMed citations: 445.
445 articles citing: The UNITE database for molecular identification of fungi--recent updates and future perspectives
Fungal Communities Are More Sensitive to the Simulated Environmental Changes than Bacterial Communities in a Subtropical Forest: the Single and Interactive Effects of Nitrogen Addition and Precipitation Seasonality Change. PMID:35927588
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake. PMID:35902092
Long-Term Organic-Inorganic Fertilization Regimes Alter Bacterial and Fungal Communities and Rice Yields in Paddy Soil. PMID:35832816
Computational Analysis of HTS Data and Its Application in Plant Pathology. PMID:35819611
Microbial Succession and Interactions During the Manufacture of Fu Brick Tea. PMID:35814693
Phototrophic and fungal communities inhabiting the Roman cryptoporticus of the national museum Machado de Castro (UNESCO site, Coimbra, Portugal). PMID:35809137
Partitioning of beta-diversity reveals distinct assembly mechanisms of plant and soil microbial communities in response to nitrogen enrichment. PMID:35784037
The Gut Mycobiome Characterization of Gestational Diabetes Mellitus and Its Association With Dietary Intervention. PMID:35783435
Microbial Communities in Biocrusts Are Recruited From the Neighboring Sand at Coastal Dunes Along the Baltic Sea. PMID:35783389
Rhizosphere Soil Microbial Community Under Ice in a High-Latitude Wetland: Different Community Assembly Processes Shape Patterns of Rare and Abundant Microbes. PMID:35677902
Scale dependency of ectomycorrhizal fungal community assembly processes in Mediterranean mixed forests. PMID:35660964
Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review. PMID:35655999
Comparative Analysis of the Microbial Community Structures Between Healthy and Anthracnose-Infected Strawberry Rhizosphere Soils Using Illumina Sequencing Technology in Yunnan Province, Southwest of China. PMID:35651487
Effects of Bacillus subtilis T6-1 on the Rhizosphere Microbial Community Structure of Continuous Cropping Poplar. PMID:35625519
Biocontamination and diversity of epilithic bacteria and fungi colonising outdoor stone and mortar sculptures. PMID:35562489
Microbial functional changes mark irreversible course of Tibetan grassland degradation. PMID:35562338
The Isolation and Characterization of Rare Mycobiome Associated With Spacecraft Assembly Cleanrooms. PMID:35558115
DNA metabarcoding reveals high relative abundance of trunk disease fungi in grapevines from Marlborough, New Zealand. PMID:35538413
Community Assembly and Stability in the Root Microbiota During Early Plant Development. PMID:35531294
Application of Manure Rather Than Plant-Origin Organic Fertilizers Alters the Fungal Community in Continuous Cropping Tobacco Soil. PMID:35516429
Insights into the microbiome assembly during different growth stages and storage of strawberry plants. PMID:35484554
Bacillus licheniformis JF-22 to Control Meloidogyne incognita and Its Effect on Tomato Rhizosphere Microbial Community. PMID:35464941
Effects of Drought on the Growth of Lespedeza davurica through the Alteration of Soil Microbial Communities and Nutrient Availability. PMID:35448615
An Integrative View of the Phyllosphere Mycobiome of Native Rubber Trees in the Brazilian Amazon. PMID:35448604
Lignans Extract from Knotwood of Norway Spruce-A Possible New Weapon against GTDs. PMID:35448588
The poly-extreme tolerant black yeasts are prevalent under high ultraviolet light and climatic seasonality across soils of global biomes. PMID:35324062
Endolichenic Fungal Community Analysis by Pure Culture Isolation and Metabarcoding: A Case Study of Parmotrema tinctorum. PMID:35291596
Response of soil microbial community to plant composition changes in broad-leaved forests of the karst area in Mid-Subtropical China. PMID:35282286
Detection of multiple mycetoma pathogens using fungal metabarcoding analysis of soil DNA in an endemic area of Sudan. PMID:35275915
Proteomic Profiling and Rhizosphere-Associated Microbial Communities Reveal Adaptive Mechanisms of Dioclea apurensis Kunth in Eastern Amazon's Rehabilitating Minelands. PMID:35270182
Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs. PMID:35232978
Fungal Communities of Spring Barley from Seedling Emergence to Harvest During a Severe Puccinia hordei Epidemic. PMID:35229200
A long-read amplicon approach to scaling up the metabarcoding of lichen herbarium specimens. PMID:35153530
Fungal mycobiome drives IL-33 secretion and type 2 immunity in pancreatic cancer. PMID:35120601
Weeds Harbor an Impressive Diversity of Fungi, Which Offers Possibilities for Biocontrol. PMID:35080907
Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2). PMID:35071701
Interaction of Gut Microbiota and Brain Function in Patients With Chronic Insomnia: A Regional Homogeneity Study. PMID:35069107
Contrasting effects of genotype and root size on the fungal and bacterial communities associated with apple rootstocks. PMID:35043188
Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes. PMID:35014868
Asperosporus subterraneus, a new genus and species of sequestrate Agaricaceae found in Florida nursery production. PMID:35005575
Forest tree growth is linked to mycorrhizal fungal composition and function across Europe. PMID:35001085
Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. PMID:34991714
Effect ofBacillus velezensis JC-K3 on Endophytic Bacterial and Fungal Diversity in Wheat Under Salt Stress. PMID:34987493
Contrasting Patterns and Drivers of Soil Fungal Communities between Two Ecosystems Divided by the Treeline. PMID:34835408
Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient. PMID:34835321
Evidence for host-microbiome co-evolution in apple. PMID:34823272
Intercropping Systems Modify Desert Plant-Associated Microbial Communities and Weaken Host Effects in a Hyper-Arid Desert. PMID:34803977
Small-scale agricultural grassland management can affect soil fungal community structure as much as continental scale geographic patterns. PMID:34792119
Enhanced Yield of Pepper Plants Promoted by Soil Application of Volatiles From Cell-Free Fungal Culture Filtrates Is Associated With Activation of the Beneficial Soil Microbiota. PMID:34745186
Factors Influencing Distribution of Coccidioides immitis in Soil, Washington State, 2016. PMID:34730378
Large-Scale Characterization of the Soil Microbiome in Ancient Tea Plantations Using High-Throughput 16S rRNA and Internal Transcribed Spacer Amplicon Sequencing. PMID:34721345
Identifying optimal bioinformatics protocols for aerosol microbial community data. PMID:34703658
Different characteristics of microbial diversity and special functional microbes in rainwater and topsoil before and after 2019 new coronavirus epidemic in Inner Mongolia Grassland. PMID:34687707
Lack of Phylogenetic Differences in Ectomycorrhizal Fungi among Distinct Mediterranean Pine Forest Habitats. PMID:34682215
A Comparative Analysis of the Microbiome of Kiwifruit at Harvest Under Open-Field and Rain-Shelter Cultivation Systems. PMID:34659192
Global Patterns and Climatic Controls of Dust-Associated Microbial Communities. PMID:34643450
Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBank. PMID:34594153
Host-Environment Interplay Shapes Fungal Diversity in Mosquitoes. PMID:34585960
Subterranean Microbiome Affiliations of Plantain (Musa spp.) Under Diverse Agroecologies of Western and Central Africa. PMID:34585290
Microbes on decomposing litter in streams: entering on the leaf or colonizing in the water? PMID:34580429
Analysis of Stored Wheat Grain-Associated Microbiota Reveals Biocontrol Activity among Microorganisms against Mycotoxigenic Fungi. PMID:34575819
Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice. PMID:34575802
Drought Influences Fungal Community Dynamics in the Grapevine Rhizosphere and Root Microbiome. PMID:34575724
Focused Microbiome Shifts in Reconstructed Wetlands Correlated with Elevated Copper Concentrations Originating from Micronized Copper Azole-Treated Wood. PMID:34551151
Fungal Community Analyses of Endophytic Fungi from Two Oak Species, Quercus mongolica and Quercus serrata, in Korea. PMID:34512082
What's for dinner this time?: DNA authentication of "wild mushrooms" in food products sold in the USA. PMID:34414024
Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA. PMID:34361905
Fungal diversity in the coastal waters of King George Island (maritime Antarctica). PMID:34322842
Unraveling negative biotic interactions determining soil microbial community assembly and functioning. PMID:34321619
Novel lichen-dominated hypolithic communities in the Namib Desert. PMID:34312709
Investigation of Fungal Strains Composition in Fruit Pollens for Artificial Pollination. PMID:34290548
Outbreaks of Root Rot Disease in Different Aged American Ginseng Plants Are Associated With Field Microbial Dynamics. PMID:34248889
Activity of Fengycin and Iturin A Isolated From Bacillus subtilis Z-14 on Gaeumannomyces graminis Var. tritici and Soil Microbial Diversity. PMID:34220767
Impact of Cellulose-Rich Organic Soil Amendments on Growth Dynamics and Pathogenicity of Rhizoctonia solani. PMID:34204724
Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation. PMID:34131077
Assembly of the Populus Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors. PMID:34106767
Transmission of Seed and Soil Microbiota to Seedling. PMID:34100639
Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America. PMID:34068887
Establishment of spruce plantations in native birch forests reduces soil fungal diversity. PMID:34057174
Management After Windstorm Affects the Composition of Ectomycorrhizal Symbionts of Regenerating Trees but Not Their Mycorrhizal Networks. PMID:34054889
Deep Soil Layers of Drought-Exposed Forests Harbor Poorly Known Bacterial and Fungal Communities. PMID:34025630
HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis. PMID:34025601
Factors contributing to ice nucleation and sequential freezing of leaves in wheat. PMID:34014374
Stimulated saprotrophic fungi in arable soil extend their activity to the rhizosphere and root microbiomes of crop seedlings. PMID:33973345
Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition. PMID:33936016
Evaluation of Phenolic Root Exudates as Stimulants of Saptrophic Fungi in the Rhizosphere. PMID:33936001
Do Aerial Nitrogen Depositions Affect Fungal and Bacterial Communities of Oak Leaves? PMID:33935994
Symbiont switching and trophic mode shifts in Orchidaceae. PMID:33932029
A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1. PMID:33903229
Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils. PMID:33902718
Morphology and quantification of fungal growth in residential dust and carpets. PMID:33897093
Diversity and spatial distribution of endophytic fungi in Cinnamomum longepaniculatum of Yibin, China. PMID:33877389
Diversity structure of the microbial communities in the guts of four neotropical termite species. PMID:33868801
Experimental parameters defining ultra-low biomass bioaerosol analysis. PMID:33863892
Amplicon Sequencing of Variable 16S rRNA from Bacteria and ITS2 Regions from Fungi and Plants, Reveals Honeybee Susceptibility to Diseases Results from Their Forage Availability under Anthropogenic Landscapes. PMID:33810160
Diversity of Microorganisms in Biocrusts Surrounding Highly Saline Potash Tailing Piles in Germany. PMID:33808463
Effects of cotton-maize rotation on soil microbiome structure. PMID:33774915
Global analysis of the apple fruit microbiome: are all apples the same? PMID:33734550
Tree Species Richness and Neighborhood Effects on Ectomycorrhizal Fungal Richness and Community Structure in Boreal Forest. PMID:33692762
DNA Metabarcoding for the Characterization of Terrestrial Microbiota-Pitfalls and Solutions. PMID:33673098
Impacts of replanting American ginseng on fungal assembly and abundance in response to disease outbreaks. PMID:33616683
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce. PMID:33594001
Fecal Fungal Dysbiosis in Chinese Patients With Alzheimer's Disease. PMID:33585471
Terroir Is the Main Driver of the Epiphytic Bacterial and Fungal Communities of Mango Carposphere in Reunion Island. PMID:33584584
Rhizoplane and Rhizosphere Fungal Communities of Geographically Isolated Korean Bellflower (Campanula takesimana Nakai). PMID:33578742
Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance. PMID:33525047
Biocontrol of Two Bacterial Inoculant Strains and Their Effects on the Rhizosphere Microbial Community of Field-Grown Wheat. PMID:33506038
Endosphere Microbiome and Metabolic Differences Between the Spots and Green Parts of Tricyrtis macropoda Leaves. PMID:33505373
Root Endophytic Fungal Community and Carbon and Nitrogen Stable Isotope Patterns Differ among Bletilla Species (Orchidaceae). PMID:33498277
Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert. PMID:33488547
Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens. PMID:33467169
Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon. PMID:33424807
Six-Week Exercise Training With Dietary Restriction Improves Central Hemodynamics Associated With Altered Gut Microbiota in Adolescents With Obesity. PMID:33365012
Foliar mycoendophytome of an endemic plant of the Mediterranean biome (Myrtus communis) reveals the dominance of basidiomycete woody saprotrophs. PMID:33344092
Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar. PMID:33329437
You don't have the guts: a diverse set of fungi survive passage through Macrotermes bellicosus termite guts. PMID:33297950
Bacterial Communities Are More Sensitive to Water Addition Than Fungal Communities Due to Higher Soil K and Na in a Degraded Karst Ecosystem of Southwestern China. PMID:33240226
Assessment of fungal diversity in soil rhizosphere associated with Rhazya stricta and some desert plants using metagenomics. PMID:33231748
Variation in hyphal production rather than turnover regulates standing fungal biomass in temperate hardwood forests. PMID:33226630
Heritable Variation in Pea for Resistance Against a Root Rot Complex and Its Characterization by Amplicon Sequencing. PMID:33224157
Fungal Clusters and Their Uniqueness in Geographically Segregated Wetlands: A Step Forward to Marsh Conservation for a Wealth of Future Fungal Resources. PMID:33177915
Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment. PMID:33141324
Partner turnover and changes in ectomycorrhizal fungal communities during the early life stages of European beech (Fagus sylvatica L.). PMID:33140217
Characterising the effect of crop species and fertilisation treatment on root fungal communities. PMID:33127926
Bio-priming with a hypovirulent phytopathogenic fungus enhances the connection and strength of microbial interaction network in rapeseed. PMID:33127920
Cryptic fungal diversity revealed in deep-sea sediments associated with whale-fall chemosynthetic ecosystems. PMID:33062387
Ericoid mycorrhizal symbiosis: theoretical background and methods for its comprehensive investigation. PMID:33043410
Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans-Brassica napus pathosystem. PMID:32975002
Unconventional Yeasts Are Tolerant to Common Antifungals, and Aureobasidium pullulans Has Low Baseline Sensitivity to Captan, Cyprodinil, and Difenoconazole. PMID:32942551
Higher host plant specialization of root-associated endophytes than mycorrhizal fungi along an arctic elevational gradient. PMID:32884673
Plant species identity drives soil microbial community structures that persist under a following crop. PMID:32884648
Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. PMID:32843557
Skin microbiota in health and disease: From sequencing to biology. PMID:32804417
Bacterial Blight Induced Shifts in Endophytic Microbiome of Rice Leaves and the Enrichment of Specific Bacterial Strains With Pathogen Antagonism. PMID:32793250
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis. PMID:32778056
Synthetic community with six Pseudomonas strains screened from garlic rhizosphere microbiome promotes plant growth. PMID:32762153
Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. PMID:32760545
Microbiome Variation Across Two Hemlock Species With Hemlock Woolly Adelgid Infestation. PMID:32733417
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? PMID:32714773
Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa. PMID:32695089
Plant Hosts Modify Belowground Microbial Community Response to Extreme Drought. PMID:32606021
Meta-Analysis and Evaluation by Insect-Mediated Baiting Reveal Different Patterns of Hypocrealean Entomopathogenic Fungi in the Soils From Two Regions of China. PMID:32595616
Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple. PMID:32585961
Temperate Forests Dominated by Arbuscular or Ectomycorrhizal Fungi Are Characterized by Strong Shifts from Saprotrophic to Mycorrhizal Fungi with Increasing Soil Depth. PMID:32556393
Rhizosphere Soil Fungal Communities of Aluminum-Tolerant and -Sensitive Soybean Genotypes Respond Differently to Aluminum Stress in an Acid Soil. PMID:32547532
Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies. PMID:32523565
Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. PMID:32510843
Alien ectomycorrhizal plants differ in their ability to interact with co-introduced and native ectomycorrhizal fungi in novel sites. PMID:32499492
Crop management system and carrot genotype affect endophyte composition and Alternaria dauci suppression. PMID:32497087
Neighboring trees regulate the root-associated pathogenic fungi on the host plant in a subtropical forest. PMID:32489621
Soil fungal networks maintain local dominance of ectomycorrhizal trees. PMID:32457288
Modeling microbial growth in carpet dust exposed to diurnal variations in relative humidity using the "Time-of-Wetness" framework. PMID:32403157
Role of Leaf Litter in Above-Ground Wood Decay. PMID:32397554
Characterizing the Fungal Microbiome in Date (Phoenix dactylifera) Fruit Pulp and Peel from Early Development to Harvest. PMID:32354087
Assessment of microbiota present on a Portuguese historical stone convent using high-throughput sequencing approaches. PMID:32352657
Low Nitrogen Fertilization Alter Rhizosphere Microorganism Community and Improve Sweetpotato Yield in a Nitrogen-Deficient Rocky Soil. PMID:32351491
Island biogeography of soil bacteria and fungi: similar patterns, but different mechanisms. PMID:32341471
Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: a cross-sectional study. PMID:32318265
Harvesting Mango Fruit with a Short Stem-End Altered Endophytic Microbiome and Reduce Stem-End Rot. PMID:32295088
Beyond Just Bacteria: Functional Biomes in the Gut Ecosystem Including Virome, Mycobiome, Archaeome and Helminths. PMID:32231141
Comparative Analysis of Rhizosphere Microbiomes of Southern Highbush Blueberry (Vaccinium corymbosum L.), Darrow's Blueberry (V. darrowii Camp), and Rabbiteye Blueberry (V. virgatum Aiton). PMID:32226421
Soil fungal guilds as important drivers of the plant richness-productivity relationship. PMID:32222103
Yeasts and Bacterial Consortia from Kefir Grains Are Effective Biocontrol Agents of Postharvest Diseases of Fruits. PMID:32197504
Soil resilience and recovery: rapid community responses to management changes. PMID:32165771
Microbial Community and Its Association With Physicochemical Factors During Compost Bedding for Dairy Cows. PMID:32153538
A survey of invasive plants on grassland soil microbial communities and ecosystem services. PMID:32152302
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed. PMID:32059747
Soil properties explain tree growth and mortality, but not biomass, across phosphorus-depleted tropical forests. PMID:32041976
Microbiome Dynamics Associated With the Atacama Flowering Desert. PMID:32038589
Community structure of soil fungi in a novel perennial crop monoculture, annual agriculture, and native prairie reconstruction. PMID:31999724
Sequence data describing the fungal community in a tropical quartzite soil. PMID:31993470
Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities. PMID:31964728
Influences of Ingredients and Bakers on the Bacteria and Fungi in Sourdough Starters and Bread. PMID:31941818
Soil Microbial Networks Shift Across a High-Elevation Successional Gradient. PMID:31921064
Soil Bacterial and Fungal Communities Exhibit Distinct Long-Term Responses to Disturbance in Temperate Forests. PMID:31921050
The Xylella fastidiosa-Resistant Olive Cultivar "Leccino" Has Stable Endophytic Microbiota during the Olive Quick Decline Syndrome (OQDS). PMID:31906093
Fungal and bacterial diversity of Svalbard subglacial ice. PMID:31882659
Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time. PMID:31861322
Supplementation of live yeast based feed additive in early life promotes rumen microbial colonization and fibrolytic potential in lambs. PMID:31844130
Connection the Rhizomicrobiome and Plant MAPK Gene Expression Response to Pathogenic Fusarium oxysporum in Wild and Cultivated Soybean. PMID:31832042
Grapevine Phyllosphere Community Analysis in Response to Elicitor Application against Powdery Mildew. PMID:31817902
Structure and ecological function of the soil microbiome affecting plant-soil feedbacks in the presence of a soil-borne pathogen. PMID:31788934
Variation in Soil Fungal Composition Associated with the Invasion of Stellera chamaejasme L. in Qinghai-Tibet Plateau Grassland. PMID:31756979
Structural and Functional Dynamics of Soil Microbes following Spruce Beetle Infestation. PMID:31732575
A Bioinformatics Guide to Plant Microbiome Analysis. PMID:31708944
Effect of nitrogen application rate on soil fungi community structure in a rice-fish mutualistic system. PMID:31700035
Soil microbes drive phylogenetic diversity-productivity relationships in a subtropical forest. PMID:31681847
The effects of Rhodopseudomonas palustris PSB06 and CGA009 with different agricultural applications on rice growth and rhizosphere bacterial communities. PMID:31673871
Co-occurring Fungal Functional Groups Respond Differently to Tree Neighborhoods and Soil Properties Across Three Tropical Rainforests in Panama. PMID:31654106
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix). PMID:31616589
Bark coverage shifts assembly processes of microbial decomposer communities in dead wood. PMID:31594501
Understanding the phyllosphere microbiome assemblage in grape species (Vitaceae) with amplicon sequence data structures. PMID:31586145
Host availability drives distributions of fungal endophytes in the imperilled boreal realm. PMID:31548643
Seasonal Dynamics of Soil Fungal and Bacterial Communities in Cool-Temperate Montane Forests. PMID:31507559
Seasonal dynamics of microbial diversity in the rhizosphere of Ulmus pumila L. var. sabulosa in a steppe desert area of Northern China. PMID:31497396
Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat. PMID:31470910
Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms. PMID:31467355
Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes. PMID:31448388
Bioremediation of Dichlorodiphenyltrichloroethane (DDT)-Contaminated Agricultural Soils: Potential of Two Autochthonous Saprotrophic Fungal Strains. PMID:31444208
Biocontrol of Aspergillus flavus in Ensiled Sorghum by Water Kefir Microorganisms. PMID:31405185
Revealing Cues for Fungal Interplay in the Plant-Air Interface in Vineyards. PMID:31404250
The role of inoculum dispersal and plant species identity in the assembly of leaf endophytic fungal communities. PMID:31310633
Natural limestone discolouration triggered by microbial activity-a contribution. PMID:31294236
Metal-Tolerant Fungal Communities Are Delineated by High Zinc, Lead, and Copper Concentrations in Metalliferous Gobi Desert Soils. PMID:31273405
Understanding fungal potential in the mitigation of contaminated areas in the Czech Republic: tolerance, biotransformation of hexachlorocyclohexane (HCH) and oxidative stress analysis. PMID:31228071
Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada. PMID:31191571
The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards. PMID:31178845
Shifts in the Composition of the Microbiota of Stored Wheat Grains in Response to Fumigation. PMID:31156603
A few Ascomycota taxa dominate soil fungal communities worldwide. PMID:31147554
Variations in phyllosphere microbial community along with the development of angular leaf-spot of cucumber. PMID:31134393
Microbial succession on decomposing root litter in a drought-prone Scots pine forest. PMID:31123321
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin. PMID:31103040
Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima. PMID:31081214
Fungal Elevational Rapoport pattern from a High Mountain in Japan. PMID:31024040
High-Alpine Permafrost and Active-Layer Soil Microbiomes Differ in Their Response to Elevated Temperatures. PMID:31001236
Changes in Fungal Communities across a Forest Disturbance Gradient. PMID:30979833
Maize synthesized benzoxazinoids affect the host associated microbiome. PMID:30975184
Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. PMID:30949152
Microbial Community Succession and Response to Environmental Variables During Cow Manure and Corn Straw Composting. PMID:30936861
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps. PMID:30903202
Biotic filtering of endophytic fungal communities in Bromus tectorum. PMID:30900053
Foliar-feeding insects acquire microbiomes from the soil rather than the host plant. PMID:30890706
A different suite: The assemblage of distinct fungal communities in water-damaged units of a poorly-maintained public housing building. PMID:30883565
Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland. PMID:30837969
Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings. PMID:30834960
Intensive tropical land use massively shifts soil fungal communities. PMID:30833601
Fecal transplant modifies urine chemistry risk factors for urinary stone disease. PMID:30789675
Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing Selection. PMID:30782658
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. PMID:30782112
Lactifluusbicapillus (Russulales, Russulaceae), a new species from the Guineo-Congolian rainforest. PMID:30728744
A Fungal World: Could the Gut Mycobiome Be Involved in Neurological Disease? PMID:30687254
Floral and Foliar Source Affect the Bee Nest Microbial Community. PMID:30552443
In situ Orchid Seedling-Trap Experiment Shows Few Keystone and Many Randomly Associated Mycorrhizal Fungal Species During Early Plant Colonization. PMID:30505314
Characterization of fungal dysbiosis in Japanese patients with inflammatory bowel disease. PMID:30478724
Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant-fungus networks. PMID:30463525
The structure and function of the global citrus rhizosphere microbiome. PMID:30459421
Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests. PMID:30397540
Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing. PMID:30359454
High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations. PMID:30358140
Validation of two Amanita species from eastern North America: A.rhacopus sp. nov. and A.variicolor sp. nov. PMID:30275739
Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. PMID:30271256
Use of sugarcane-soybean intercropping in acid soil impacts the structure of the soil fungal community. PMID:30262899
The mammalian mycobiome: A complex system in a dynamic relationship with the host. PMID:30255552
Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils. PMID:30254616
Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine's Phyllosphere and Carposphere: An NGS Approach. PMID:30248973
Characterization of Aspergillus niger Isolated from the International Space Station. PMID:30246146
Removal of soil biota alters soil feedback effects on plant growth and defense chemistry. PMID:30220096
Yeast Probiotics Shape the Gut Microbiome and Improve the Health of Early-Weaned Piglets. PMID:30210480
Over 2.5 million COI sequences in GenBank and growing. PMID:30192752
Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems. PMID:30190708
Methods for automatic reference trees and multilevel phylogenetic placement. PMID:30169747
The last 50 years of climate-induced melting of the Maliy Aktru glacier (Altai Mountains, Russia) revealed in a primary ecological succession. PMID:30151159
Community structure of endophytic fungi of four mangrove species in Southern China. PMID:30123630
Bipolar dispersal of red-snow algae. PMID:30082897
Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes. PMID:30076592
Wild Bee Pollen Usage and Microbial Communities Co-vary Across Landscapes. PMID:30069710
Exploring the pathology of an epidermal disease affecting a circum-Antarctic sea star. PMID:30054527
Experimental and molecular approximation to microbial niche: trophic interactions between oribatid mites and microfungi in an oligotrophic freshwater system. PMID:30018858
Planktonic fungal community structures and their relationship to water quality in the Danjiangkou Reservoir, China. PMID:30006549
Nutrient Enrichment Alters Salt Marsh Fungal Communities and Promotes Putative Fungal Denitrifiers. PMID:29978357
Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae). PMID:29968731
Crop Rotation and Straw Application Impact Microbial Communities in Italian and Philippine Soils and the Rhizosphere of Zea mays. PMID:29963033
DNA Barcoding for Identification of Consumer-Relevant Fungi Sold in New York: A Powerful Tool for Citizen Scientists? PMID:29890621
Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges. PMID:29888140
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data. PMID:29868296
Metagenomic Approaches to Investigate the Contribution of the Vineyard Environment to the Quality of Wine Fermentation: Potentials and Difficulties. PMID:29867889
Fungal, Bacterial, and Archaeal Diversity in the Digestive Tract of Several Beetle Larvae (Coleoptera). PMID:29850548
The ecology of the Drosophila-yeast mutualism in wineries. PMID:29768432
A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land). PMID:29700429
Effects of fertilizations on soil bacteria and fungi communities in a degraded arid steppe revealed by high through-put sequencing. PMID:29682416
Isolation and characterization of phosphofungi, and screening of their plant growth-promoting activities. PMID:29679179
Spatiotemporal Distribution and Assemblages of Planktonic Fungi in the Coastal Waters of the Bohai Sea. PMID:29643845
Pumpkin powdery mildew disease severity influences the fungal diversity of the phyllosphere. PMID:29629242
Revealing hidden insect-fungus interactions; moderately specialized, modular and anti-nested detritivore networks. PMID:29618548
Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections. PMID:29593263
Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb. PMID:29573431
Responses of fungal community composition to long-term chemical and organic fertilization strategies in Chinese Mollisols. PMID:29573192
Microbial diversity in two traditional bacterial douchi from Gansu province in northwest China using Illumina sequencing. PMID:29570735
The diversity of ice algal communities on the Greenland Ice Sheet as revealed by oligotyping. PMID:29547098
Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits. PMID:29523892
Automated high throughput animal CO1 metabarcode classification. PMID:29523803
Depth matters: effects of precipitation regime on soil microbial activity upon rewetting of a plant-soil system. PMID:29476139
The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows. PMID:29445366
Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats. PMID:29441234
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome. PMID:29433554
Colony-PCR Is a Rapid Method for DNA Amplification of Hyphomycetes. PMID:29376929
Analyses of Sporocarps, Morphotyped Ectomycorrhizae, Environmental ITS and LSU Sequences Identify Common Genera that Occur at a Periglacial Site. PMID:29376900
Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence. PMID:29374490
Management regime is the most important factor influencing ectomycorrhizal species community in Norway spruce forests after windthrow. PMID:29352412
Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. PMID:29338764
Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera. PMID:29326681
Novel ITS1 Fungal Primers for Characterization of the Mycobiome. PMID:29242834
CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences. PMID:29212440
Limited Effects of Variable-Retention Harvesting on Fungal Communities Decomposing Fine Roots in Coastal Temperate Rainforests. PMID:29180362
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity. PMID:29167456
Ecology of Alpine Macrofungi - Combining Historical with Recent Data. PMID:29123508
Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting. PMID:29104570
Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites. PMID:29093702
Arbuscular mycorrhizal fungi promote coexistence and niche divergence of sympatric palm species on a remote oceanic island. PMID:29034978
PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities. PMID:28993761
Ectomycorrhizal Fungal Communities in Urban Parks Are Similar to Those in Natural Forests but Shaped by Vegetation and Park Age. PMID:28970220
Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control. PMID:28961941
Microbes and associated soluble and volatile chemicals on periodically wet household surfaces. PMID:28950891
Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe. PMID:28943873
Comparative metagenomics approaches to characterize the soil fungal communities of western coastal region, Saudi Arabia. PMID:28934322
Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production. PMID:28892512
Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape. PMID:28887416
Spatiotemporal Variation and Networks in the Mycobiome of the Wheat Canopy. PMID:28824687
Microbial volatile compounds alter the soil microbial community. PMID:28803260
Variability of indoor fungal microbiome of green and non-green low-income homes in Cincinnati, Ohio. PMID:28803198
Host Specificity of Endophytic Mycobiota of Wild Nicotiana Plants from Arid Regions of Northern Australia. PMID:28702707
Human presence impacts fungal diversity of inflated lunar/Mars analog habitat. PMID:28693587
Ecological Succession Pattern of Fungal Community in Soil along a Retreating Glacier. PMID:28649234
Exposure to dairy manure leads to greater antibiotic resistance and increased mass-specific respiration in soil microbial communities. PMID:28356447
Land-use types and soil chemical properties influence soil microbial communities in the semiarid Loess Plateau region in China. PMID:28349918
Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics. PMID:28348455
Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. PMID:28289729
The Emerging Pathogen Candida auris: Growth Phenotype, Virulence Factors, Activity of Antifungals, and Effect of SCY-078, a Novel Glucan Synthesis Inhibitor, on Growth Morphology and Biofilm Formation. PMID:28223375
The mycobiome of the human urinary tract: potential roles for fungi in urology. PMID:28217696
Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community. PMID:28199101
Effect of soil moisture on root-associated fungal communities of Erica dominans in Drakensberg mountains in South Africa. PMID:28083703
Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens. PMID:28071648
Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi. PMID:28056814
Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands. PMID:28039600
Phylogenetic congruence between subtropical trees and their associated fungi. PMID:28031793
Arbuscular mycorrhizal fungal community differences among European long-term observatories. PMID:27942957
Scleroderma areolatum ectomycorrhiza on Fagus sylvatica L. PMID:27913893
Are there keystone mycorrhizal fungi associated to tropical epiphytic orchids? PMID:27882467
Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort. PMID:27862555
Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing. PMID:27861539
Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons. PMID:27861486
Gradual Changes of Gut Microbiota in Weaned Miniature Piglets. PMID:27853453
Characterization of Aspergillus fumigatus Isolates from Air and Surfaces of the International Space Station. PMID:27830189
Sensitive responders among bacterial and fungal microbiome to pyrogenic organic matter (biochar) addition differed greatly between rhizosphere and bulk soils. PMID:27824111
Mining the oral mycobiome: Methods, components, and meaning. PMID:27791473
Spatial and compositional variation in the fungal communities of organic and conventionally grown apple fruit at the consumer point-of-purchase. PMID:27766161
Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat. PMID:27727301
Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities. PMID:27685330
Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes. PMID:27630629
Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation. PMID:27618652
Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures. PMID:27579024
Long-Term Recovery of Microbial Communities in the Boreal Bryosphere Following Fire Disturbance. PMID:27538873
Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome. PMID:27358031
Soil drying procedure affects the DNA quantification of Lactarius vinosus but does not change the fungal community composition. PMID:27317489
Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics. PMID:27302757
Effect of Co-Composting Cattle Manure with Construction and Demolition Waste on the Archaeal, Bacterial, and Fungal Microbiota, and on Antimicrobial Resistance Determinants. PMID:27300323
Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico. PMID:27280070
Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar. PMID:27241188
Soil fungal community development in a high Arctic glacier foreland follows a directional replacement model, with a mid-successional diversity maximum. PMID:27240660
Rainforest Conversion to Rubber Plantation May Not Result in Lower Soil Diversity of Bacteria, Fungi, and Nematodes. PMID:27221090
Phylogeny-aware identification and correction of taxonomically mislabeled sequences. PMID:27166378
Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides. PMID:27147439
Contribution of Vegetation to the Microbial Composition of Nearby Outdoor Air. PMID:27107117
Distinctive Tropical Forest Variants Have Unique Soil Microbial Communities, But Not Always Low Microbial Diversity. PMID:27092105
Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. PMID:27077013
Infection with a Shoot-Specific Fungal Endophyte (Epichloë) Alters Tall Fescue Soil Microbial Communities. PMID:26992401
Network modules and hubs in plant-root fungal biomes. PMID:26962029
Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance. PMID:26943623
Dispersal of Bacillus subtilis and its effect on strawberry phyllosphere microbiota under open field and protection conditions. PMID:26936109
Friend or foe? Biological and ecological traits of the European ash dieback pathogen Hymenoscyphus fraxineus in its native environment. PMID:26900083
Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities. PMID:26824176
Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas. PMID:26731732
Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity. PMID:26505627
Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry. PMID:26504572
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities. PMID:26502721
Urban stress is associated with variation in microbial species composition-but not richness-in Manhattan. PMID:26394011
The ecology of microscopic life in household dust. PMID:26311665
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. PMID:26283343
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent. PMID:26172210
Evidences on the Ability of Mycorrhizal Genus Piloderma to Use Organic Nitrogen and Deliver It to Scots Pine. PMID:26132469
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. PMID:26130132
Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils. PMID:26053848
Chamber bioaerosol study: outdoor air and human occupants as sources of indoor airborne microbes. PMID:26024222
Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation. PMID:25969988
Response of the Rumen Microbiota of Sika Deer (Cervus nippon) Fed Different Concentrations of Tannin Rich Plants. PMID:25955033
Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition. PMID:25933637
Continental-scale distributions of dust-associated bacteria and fungi. PMID:25902536
Mycobiome: Approaches to analysis of intestinal fungi. PMID:25891793
Fungi identify the geographic origin of dust samples. PMID:25875229
Priority effects during fungal community establishment in beech wood. PMID:25798754
A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts. PMID:25786896
Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance. PMID:25756611
The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era. PMID:25737596
Plunging hands into the mushroom jar: a phylogenetic framework for Lyophyllaceae (Agaricales, Basidiomycota). PMID:25652231
Dysbiosis of fungal microbiota in the intestinal mucosa of patients with colorectal adenomas. PMID:25613490
Profiling microbial communities in manganese remediation systems treating coal mine drainage. PMID:25595765
Emergence shapes the structure of the seed microbiota. PMID:25501471
ITScan: a web-based analysis tool for Internal Transcribed Spacer (ITS) sequences. PMID:25430816
The impact of selective-logging and forest clearance for oil palm on fungal communities in Borneo. PMID:25405609
Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing. PMID:25391237
Distinct soil microbial diversity under long-term organic and conventional farming. PMID:25350160
The diversity of endophytic fungi in the above-ground tissue of two Lycopodium species in Poland. PMID:25264398
Short-term impacts of energy wood harvesting on ectomycorrhizal fungal communities of Norway spruce saplings. PMID:25171334
Summer temperature increase has distinct effects on the ectomycorrhizal fungal communities of moist tussock and dry tundra in Arctic Alaska. PMID:25156129
Responses of soil fungi to logging and oil palm agriculture in Southeast Asian tropical forests. PMID:25149283
Impact of next generation sequencing techniques in food microbiology. PMID:25132799
The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing. PMID:25083930
The genus Lactarius s. str. (Basidiomycota, Russulales) in Togo (West Africa): phylogeny and a new species described. PMID:25083405
An Illumina metabarcoding pipeline for fungi. PMID:25077016
Conducting a microbiome study. PMID:25036628
Convergence in mycorrhizal fungal communities due to drought, plant competition, parasitism, and susceptibility to herbivory: consequences for fungi and host plants. PMID:25009537
Indigenous bacteria and fungi drive traditional kimoto sake fermentations. PMID:24973064
The contribution of DNA metabarcoding to fungal conservation: diversity assessment, habitat partitioning and mapping red-listed fungi in protected coastal Salix repens communities in the Netherlands. PMID:24937200
Parasites in algae mass culture. PMID:24936200
Analyses of the temporal dynamics of fungal communities colonizing the healthy wood tissues of esca leaf-symptomatic and asymptomatic vines. PMID:24788412
Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides. PMID:24682305
Airborne bacterial communities in residences: similarities and differences with fungi. PMID:24603548
Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing. PMID:24599149
Interactions between fungi and bacteria influence microbial community structure in the Megachile rotundata larval gut. PMID:24478297
Ion Torrent PGM as tool for fungal community analysis: a case study of endophytes in Eucalyptus grandis reveals high taxonomic diversity. PMID:24358124
Distinct microbial communities associated with buried soils in the Siberian tundra. PMID:24335828
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate. PMID:24277822
The diversity and distribution of fungi on residential surfaces. PMID:24223861
Availability of ectomycorrhizal fungi to black spruce above the present treeline in Eastern Labrador. PMID:24204858
Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests. PMID:24173458
Fungi at a small scale: spatial zonation of fungal assemblages around single trees. PMID:24147130
Analytical tools and databases for metagenomics in the next-generation sequencing era. PMID:24124405
Resistance and resilience of the forest soil microbiome to logging-associated compaction. PMID:24030594
Meeting report: fungal its workshop (october 2012). PMID:23961317
The human mycobiome in health and disease. PMID:23899327
Molecular analyses confirm Brevicellicium in Trechisporales. PMID:23898409
A unique signal distorts the perception of species richness and composition in high-throughput sequencing surveys of microbial communities: a case study of fungi in indoor dust. PMID:23880792
Monitoring Seasonal Changes in Winery-Resident Microbiota. PMID:23840468
Facility-specific "house" microbiome drives microbial landscapes of artisan cheesemaking plants. PMID:23793641
Insights into fungal communities in composts revealed by 454-pyrosequencing: implications for human health and safety. PMID:23785368
Spatial and temporal variation in fungal endophyte communities isolated from cultivated cotton (Gossypium hirsutum). PMID:23776604
Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi. PMID:23762515
Surface microbes in the neonatal intensive care unit: changes with routine cleaning and over time. PMID:23740726
High genetic diversity at the regional scale and possible speciation in Sebacina epigaea and S. incrustans. PMID:23697379
Filling gaps in biodiversity knowledge for macrofungi: contributions and assessment of an herbarium collection DNA barcode sequencing project. PMID:23638077
Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide. PMID:23534863
Ectomycorrhizal fungal communities associated to Nothofagus species in Northern Patagonia. PMID:23475507
Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances. PMID:23426013
Analysis of black fungal biofilms occurring at domestic water taps. I: compositional analysis using Tag-Encoded FLX Amplicon Pyrosequencing. PMID:23385952
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. PMID:23377949
Fungal systematics: is a new age of enlightenment at hand? PMID:23288349
PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution. PMID:23028445
Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes. PMID:22852578
Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars. PMID:22729532
Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa. PMID:22592855
Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error. PMID:22558215
Unravelling soil fungal communities from different Mediterranean land-use backgrounds. PMID:22536336
Diversity measures in environmental sequences are highly dependent on alignment quality--data from ITS and new LSU primers targeting basidiomycetes. PMID:22363808
Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi. PMID:21949797
Ericaceous dwarf shrubs affect ectomycorrhizal fungal community of the invasive Pinus strobus and native Pinus sylvestris in a pot experiment. PMID:21161550
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
ribosomal rna
metasource: Fairsharing.org
version: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
life sciences
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
mycology
metasource: re3data.org
version: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
ribosomal rna
metasource: Fairsharing.orgversion: FAIRsharing.org: UNITE; Molecular database for the identification of fungi; DOI: https://doi.org/10.25504/FAIRsharing.cnwx8c; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
life sciences
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
mycology
metasource: re3data.orgversion: re3data.org: UNITE; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37635 last accessed: 2022-11-04
dna gene ribosomal rna genomics life sciences mycology
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