R3FP60 last accessed: 2022-11-04

SILVA rRNA database
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

silva
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

Other names: SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data, A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data., SILVA rRNA database, silva

SILVA is a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains alongside supplementary online services. In addition to data products, SILVA provides various online tools such as alignment and classification, phylogenetic tree calculation and viewer, probe/primer matching, and an amplicon analysis pipeline. With every full release a curated guide tree is provided that contains the latest taxonomy and nomenclature based on multiple references. The SILVA curation team is now part of Bergey’s Trustees and the Protist Reference Taxonomy Project UniEuk, which will further improve the quality of SILVA taxonomy. In order to cope with the dramatic expansion of bacterial and archaeal phyla, we have also teamed up with phylogenomic taxonomy efforts (i.e. Genome Taxonomy Database). SILVA is an ELIXIR Core Data Resource.

Webpage:

https://www.arb-silva.de

Licence:

Name: Creative Commons Attribution 4.0 International (CC BY 4.0)
URL: https://creativecommons.org/licenses/by/4.0/

Publications: (8)

Publications
More detailed information about this field from each metasource.

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
PMID: 23193283
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks
PMID: 24293649
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

25 years of serving the community with ribosomal RNA gene reference databases and tools
PMID: 28648396
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

http://dx.doi.org/10.1093/nar/gkt1209
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

http://dx.doi.org/10.1093/nar/gks1219
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

http://dx.doi.org/10.1093/nar/gkm864
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

http://dx.doi.org/10.1093/bioinformatics/bts252
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

http://dx.doi.org/10.1016/j.jbiotec.2017.06.1198
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools PubMed citations: 6817.

6817 articles citing: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Fungal Communities Are More Sensitive to the Simulated Environmental Changes than Bacterial Communities in a Subtropical Forest: the Single and Interactive Effects of Nitrogen Addition and Precipitation Seasonality Change. PMID:35927588
Comparative study of different liquid diets for dairy calves and the impact on performance and the bacterial community during diarrhea. PMID:35927460
Global patterns and rates of habitat transitions across the eukaryotic tree of life. PMID:35927316
Trafficked Malayan pangolins contain viral pathogens of humans. PMID:35918420
Differential richness inference for 16S rRNA marker gene surveys. PMID:35915508
Longitudinal transmission of bacterial and fungal communities from seed to seed in rice. PMID:35915150
Microbial communities associated with mounds of the Orange-footed scrubfowl Megapodius reinwardt. PMID:35910771
The Unique Seed Protein Composition of Quality Protein Popcorn Promotes Growth of Beneficial Bacteria From the Human Gut Microbiome. PMID:35910657
Inhibition of Cronobacter sakazakii in an infant simulator of the human intestinal microbial ecosystem using a potential synbiotic. PMID:35910651
Polycyclic Aromatic Hydrocarbon Degradation in the Sea-Surface Microlayer at Coastal Antarctica. PMID:35910648
Effects of Tree Composition and Soil Depth on Structure and Functionality of Belowground Microbial Communities in Temperate European Forests. PMID:35910637
Diversity and Selection of Surface Marine Microbiomes in the Atlantic-Influenced Arctic. PMID:35910621
Novel Microorganisms Contribute to Biosulfidogenesis in the Deep Layer of an Acidic Pit Lake. PMID:35910036
De Novo Transcriptome Assembly and Analysis of the Flat Oyster Pathogenic Protozoa Bonamia Ostreae. PMID:35909967
Root-Associated Microbiota Response to Ecological Factors: Role of Soil Acidity in Enhancing Citrus Tolerance to Huanglongbing. PMID:35909738
An Outdoor Access Period Improves Chicken Cecal Microbiota and Potentially Increases Micronutrient Biosynthesis. PMID:35909674
Association between gut microbiota and prediabetes in people living with HIV. PMID:35909623
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs. PMID:35908086
A fat body transcriptome analysis of the immune responses of Rhodnius prolixus to artificial infections with bacteria. PMID:35906633
Combining multi-marker metabarcoding and digital holography to describe eukaryotic plankton across the Newfoundland Shelf. PMID:35906469
Actinobacteria Community and Their Antibacterial and Cytotoxic Activity on the Weizhou and Xieyang Volcanic Islands in the Beibu Gulf of China. PMID:35903476
Preventive Effects of Long-Term Intake of Plant Oils With Different Linoleic Acid/Alpha-Linolenic Acid Ratios on Acute Colitis Mouse Model. PMID:35903457
Community structure of coral microbiomes is dependent on host morphology. PMID:35902906
RNA viromes from terrestrial sites across China expand environmental viral diversity. PMID:35902778
Association of key species of vaginal bacteria of recurrent bacterial vaginosis patients before and after oral metronidazole therapy with short- and long-term clinical outcomes. PMID:35901180
Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. PMID:35899056
Honeysuckle Berry (Lonicera caerulea L.) Inhibits Lipase Activity and Modulates the Gut Microbiota in High-Fat Diet-Fed Mice. PMID:35897908
Early Life Short-Term Exposure to Polychlorinated Biphenyl 126 in Mice Leads to Metabolic Dysfunction and Microbiota Changes in Adulthood. PMID:35897801
Chronic-Antibiotics Induced Gut Microbiota Dysbiosis Rescues Memory Impairment and Reduces β-Amyloid Aggregation in a Preclinical Alzheimer's Disease Model. PMID:35897785
Gut microbiota and host genetics contribute to the phenotypic variation of digestive and feed efficiency traits in growing pigs fed a conventional and a high fiber diet. PMID:35896976
Organelle 16S rRNA amplicon sequencing enables profiling of active gut microbiota in murine model. PMID:35896837
Using metabarcoding and droplet digital PCR to investigate drivers of historical shifts in cyanobacteria from six contrasting lakes. PMID:35896561
Characterization of the Soil Bacterial Community from Selected Boxwood Gardens across the United States. PMID:35893572
Rhizosphere Microbial Communities and Geochemical Constraining Mechanism of Antimony Mine Waste-Adapted Plants in Southwestern China. PMID:35893564
Okra Growth, Yield and Rhizosphere Microbiome Responses to the Encapsulated Bioinoculant Application under Reduced Fertilization Regime. PMID:35892963
Effects of Resveratrol Administration in Liver Injury Prevention as Induced by an Obesogenic Diet: Role of Ruminococcaceae. PMID:35892696
FunOMIC: Pipeline with built-in fungal taxonomic and functional databases for human mycobiome profiling. PMID:35891785
The Many Ages of Microbiome-Gut-Brain Axis. PMID:35889894
Litchi-Derived Polyphenol Alleviates Liver Steatosis and Gut Dysbiosis in Patients with Non-Alcoholic Fatty Liver Disease: A Randomized Double-Blinded, Placebo-Controlled Study. PMID:35889878
The Common and Unique Pattern of Microbiome Profiles among Saliva, Tissue, and Stool Samples in Patients with Crohn's Disease. PMID:35889187
Hydrocarbon Cycling in the Tokamachi Mud Volcano (Japan): Insights from Isotopologue and Metataxonomic Analyses. PMID:35889138
Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea. PMID:35889056
Extracellular DNA: A Critical Aspect of Marine Biofilms. PMID:35889003
Abundance and Niche Differentiation of Comammox in the Sludges of Wastewater Treatment Plants That Use the Anaerobic-Anoxic-Aerobic Process. PMID:35888046
Effects of the Lipid Profile, Type 2 Diabetes and Medication on the Metabolic Syndrome-Associated Gut Microbiome. PMID:35886861
Exe-Muscle: An Exercised Human Skeletal Muscle Gene Expression Database. PMID:35886662
Dynamics of the Gut Microbiome and Transcriptome in Korea Native Ricefish (Oryzias latipes) during Chronic Antibiotic Exposure. PMID:35886026
Fecal Microbiome Features Associated with Extended-Spectrum β-Lactamase-Producing Enterobacterales Carriage in Dairy Heifers. PMID:35883285
Dynamics of gut microbiota during pregnancy in women with TPOAb-positive subclinical hypothyroidism: a prospective cohort study. PMID:35883066
Salinity of irrigation water selects distinct bacterial communities associated with date palm (Phoenix dactylifera L.) root. PMID:35882908
Plastic pollution fosters more microbial growth in lakes than natural organic matter. PMID:35882837
Core Community Persistence Despite Dynamic Spatiotemporal Responses in the Associated Bacterial Communities of Farmed Pacific Oysters. PMID:35881247
Effects of growing Coptis chinensis Franch in the natural understory vs. under a manmade scaffold on its growth, alkaloid contents, and rhizosphere soil microenvironment. PMID:35880218
Seasonal Variation of the Atmospheric Bacterial Community in the Greenlandic High Arctic Is Influenced by Weather Events and Local and Distant Sources. PMID:35879956
Effects of Land Use on the Soil Microbial Community in the Songnen Grassland of Northeast China. PMID:35879955
Frontloading of stress response genes enhances robustness to environmental change in chimeric corals. PMID:35879753
Gut microbiota plasticity in insular lizards under reversed island syndrome. PMID:35879521
External Ear Canal Evaluation in Dogs with Chronic Suppurative Otitis Externa: Comparison of Direct Cytology, Bacterial Culture and 16S Amplicon Profiling. PMID:35878383
Insights into the Antimicrobial Activities and Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species from the Rare Marine Biosphere. PMID:35877716
Effect of a bacteriocin-producing Streptococcus salivarius on the pathogen Fusobacterium nucleatum in a model of the human distal colon. PMID:35877697
Organic Connection of Holobiont Components and the Essential Roles of Core Microbes in the Holobiont Formation of Feral Brassica napus. PMID:35875588
Temporal Changes in Fecal Unabsorbed Carbohydrates Relative to Perturbations in Gut Microbiome of Neonatal Calves: Emerging of Diarrhea Induced by Extended-Spectrum β-lactamase-Producing Enteroaggregative Escherichia coli. PMID:35875583
High-Altitude Drives the Convergent Evolution of Alpha Diversity and Indicator Microbiota in the Gut Microbiomes of Ungulates. PMID:35875556
Effect of Doxycycline Use in the Early Broiler Production Cycle on the Microbiome. PMID:35875529
Manganese oxidation and prokaryotic community analysis in a polycaprolactone-packed aerated biofilm reactor operated under seawater conditions. PMID:35875177
Bacterial Microbiome in the Phyllo-Endosphere of Highly Specialized Rock Spleenwort. PMID:35874023
Seasonal variations in the composition and diversity of gut microbiota in white-lipped deer (Cervus albirostris). PMID:35873913
The Effect of Qiweibaizhu Powder Crude Polysaccharide on Antibiotic-Associated Diarrhea Mice Is Associated With Restoring Intestinal Mucosal Bacteria. PMID:35873450
Gut Microbiota Diversity of Preterm Neonates Is Associated With Clostridioides Difficile Colonization. PMID:35873148
Endothelial Caspase-8 prevents fatal necroptotic hemorrhage caused by commensal bacteria. PMID:35871233
Effects of lactoferrin on intestinal flora of metabolic disorder mice. PMID:35869430
Development of microbial communities in biofilm and activated sludge in a hybrid reactor. PMID:35869109
Plant genetic effects on microbial hubs impact host fitness in repeated field trials. PMID:35867817
Screening of Phosphate Solubilization Identifies Six Pseudomonas Species with Contrasting Phytostimulation Properties in Arabidopsis Seedlings. PMID:35867140
The Bacterial and Fungal Gut Microbiota of the Greater Wax Moth, Galleria mellonella L. Consuming Polyethylene and Polystyrene. PMID:35865934
Characteristics of Gut Microbiota in Patients With Clear Cell Renal Cell Carcinoma. PMID:35865926
Amelioration of Non-Alcoholic Steatohepatitis by Atractylodes macrocephala Polysaccharide, Chlorogenic Acid, and Geniposide Combination Is Associated With Reducing Endotoxin Gut Leakage. PMID:35865826
Microbiome dataset of eukaryotic and fungal communities in the bulk soil and root of wild Brassica napus in South Korea. PMID:35864876
Myelin like electrogenic filamentation and Liquid Microbial Fuel Cells Dataset. PMID:35864873
Hijacking of transcriptional condensates by endogenous retroviruses. PMID:35864192
Dataset of 16S rRNA and alkB genes in hydrocarbon polluted soils of Kuwait as revealed by Pyrosequencing. PMID:35859785
Identification of Sponge-Associated Bacteria From the Coast of Kuwait and Their Potential Biotechnological Applications. PMID:35859748
Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species. PMID:35859219
Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities. PMID:35859141
Body condition, skin bacterial communities and disease status: insights from the first release trial of the limosa harlequin frog, Atelopus limosus. PMID:35858072
Urinary microRNAome in healthy cats and cats with pyelonephritis or other urological conditions. PMID:35857780
High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata. PMID:35857470
Exploring the association between microbiota and behaviour in suckling piglets. PMID:35854042
Dietary Supplementation of Limosilactobacillus mucosae LM1 Enhances Immune Functions and Modulates Gut Microbiota Without Affecting the Growth Performance of Growing Pigs. PMID:35847647
The Response of Ruminal Microbiota and Metabolites to Different Dietary Protein Levels in Tibetan Sheep on the Qinghai-Tibetan Plateau. PMID:35847641
Characterising the Gut Microbiomes in Wild and Captive Short-Beaked Echidnas Reveals Diet-Associated Changes. PMID:35847103
Transcriptome Analysis to Understand Salt Stress Regulation Mechanism of Chromohalobacter salexigens ANJ207. PMID:35847097
Cow Farmers' Homes Host More Diverse Airborne Bacterial Communities Than Pig Farmers' Homes and Suburban Homes. PMID:35847077
Dynamics of the Gut Bacteriome During a Laboratory Adaptation Process of the Mediterranean Fruit Fly, Ceratitis capitata. PMID:35847076
Fresh Versus Frozen Stool for Fecal Microbiota Transplantation-Assessment by Multimethod Approach Combining Culturing, Flow Cytometry, and Next-Generation Sequencing. PMID:35847075
Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production. PMID:35847063
Diversity and Dynamics of Epidermal Microbes During Grape Development of Cabernet Sauvignon (Vitis vinifera L.) in the Ecological Viticulture Model in Wuhai, China. PMID:35847061
The Deterioration of Agronomical Traits of the Continuous Cropping of Stevia Is Associated With the Dynamics of Soil Bacterial Community. PMID:35847059
Reduced alpha diversity of the oral microbiome correlates with short progression-free survival in patients with relapsed/refractory multiple myeloma treated with ixazomib-based therapy (AGMT MM 1, phase II trial). PMID:35846090
Reno-Protective Effect of Low Protein Diet Supplemented With α-Ketoacid Through Gut Microbiota and Fecal Metabolism in 5/6 Nephrectomized Mice. PMID:35845811
Bacterial Endophytes Contribute to Rice Seedling Establishment Under Submergence. PMID:35845658
Rhizosphere soil bacterial communities and nitrogen cycling affected by deciduous and evergreen tree species. PMID:35845380
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
Flavonoid-attracted Aeromonas sp. from the Arabidopsis root microbiome enhances plant dehydration resistance. PMID:35842464
Sulfate-reducing bioreactors subjected to high sulfate loading rate or acidity: variations in microbial consortia. PMID:35841424
Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility. PMID:35840731
Changes in bovine milk bacterial microbiome from healthy and subclinical mastitis affected animals of the Girolando, Gyr, Guzera, and Holstein breeds. PMID:35838927
Bioinformatics approaches and applications in plant biotechnology. PMID:35838847
Lactobacillus paragasseri OLL2809 Improves Depression-Like Behavior and Increases Beneficial Gut Microbes in Mice. PMID:35837127
Multi-Omics Approaches Revealed the Associations of Host Metabolism and Gut Microbiome With Phylogeny and Environmental Adaptation in Mountain Dragons. PMID:35836421
Methane Reduction Potential of Brown Seaweeds and Their Influence on Nutrient Degradation and Microbiota Composition in a Rumen Simulation Technique. PMID:35836418
Landscape Topography and Regional Drought Alters Dust Microbiomes in the Sierra Nevada of California. PMID:35836417
Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters. PMID:35836413
A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment. PMID:35835784
Adaptation of the infant gut microbiome during the complementary feeding transition. PMID:35834499
Association of Intratumoral Microbiota With Prognosis in Patients With Nasopharyngeal Carcinoma From 2 Hospitals in China. PMID:35834269
Multi-locus evaluation of gastrointestinal bacterial communities from Zalophus californianus pups in the Gulf of California, México. PMID:35833012
Long-Term Organic-Inorganic Fertilization Regimes Alter Bacterial and Fungal Communities and Rice Yields in Paddy Soil. PMID:35832816
Lipid Profiles From Fresh Biofilms Along a Temperature Gradient on a Hydrothermal Stream at El Tatio (Chilean Andes), as a Proxy for the Interpretation of Past and Present Biomarkers Beyond Earth. PMID:35832812
Impacts of Delivery Mode and Maternal Factors on Neonatal Oral Microbiota. PMID:35832807
The developing airway and gut microbiota in early life is influenced by age of older siblings. PMID:35831879
Soil substrate culturing approaches recover diverse members of Actinomycetota from desert soils of Herring Island, East Antarctica. PMID:35829965
Alterations in the Microbiota of Caged Honeybees in the Presence of Nosema ceranae Infection and Related Changes in Functionality. PMID:35819480
Characterizing the Microbial Consortium L1 Capable of Efficiently Degrading Chlorimuron-Ethyl via Metagenome Combining 16S rDNA Sequencing. PMID:35814706
Microbial Succession and Interactions During the Manufacture of Fu Brick Tea. PMID:35814693
Within-community variation of interspecific divergence patterns in passerine gut microbiota. PMID:35813907
Effects of Nitrogen Addition on Soil Carbon-Fixing Microbial Diversity on Different Slopes in a Degraded Alpine Meadow. PMID:35812957
Dysbiosis in Children With Neurological Impairment and Long-Term Enteral Nutrition. PMID:35811980
The evolutionary history of cribellate orb-weaver capture thread spidroins. PMID:35810286
Dietary Fatty Acid Intake and the Colonic Gut Microbiota in Humans. PMID:35807903
Differential Transcriptional Responses in Two Old World Bemisia tabaci Cryptic Species Post Acquisition of Old and New World Begomoviruses. PMID:35805143
Human Adult Microbiota in a Static Colon Model: AhR Transcriptional Activity at the Crossroads of Host-Microbe Interaction. PMID:35804761
Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system. PMID:35804052
Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment. PMID:35803930
Incomplete denitrification phenotypes in diverse Thermus species from diverse geothermal spring sediments and adjacent soils in southwest China. PMID:35802188
Does bisphenol-A affect alteration of gut microbiome after bariatric/metabolic surgery?: a comparative metagenomic analysis in a long-term high-fat diet induced-obesity rat model. PMID:35800993
Ralstonia solanacearum Infection Disturbed the Microbiome Structure Throughout the Whole Tobacco Crop Niche as Well as the Nitrogen Metabolism in Soil. PMID:35800334
Association Between Non-Suicidal Self-Injury and Gut Microbial Characteristics in Chinese Adolescent. PMID:35799798
Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts. PMID:35798840
Shifts in rhizosphere microbial communities in Oplopanax elatus Nakai are related to soil chemical properties under different growth conditions. PMID:35798802
A Comparative Perspective on Ribosome Biogenesis: Unity and Diversity Across the Tree of Life. PMID:35796979
Characterization of the urogenital microbiome in Miniature Schnauzers with and without calcium oxalate urolithiasis. PMID:35796316
Trypanosomatid Richness Among Rats, Opossums, and Dogs in the Caatinga Biome, Northeast Brazil, a Former Endemic Area of Chagas Disease. PMID:35795183
Using PacBio SMRT Sequencing Technology and Metabolomics to Explore the Microbiota-Metabolome Interaction Related to Silage Fermentation of Woody Plant. PMID:35794909
Microplastic exposure across trophic levels: effects on the host-microbiota of freshwater organisms. PMID:35794681
Meta-omics approaches reveal unique small RNAs exhibited by the uncultured microorganisms dwelling deep-sea hydrothermal sediment in Guaymas Basin. PMID:35792953
Fecal microbiota and their association with heat stress in Bos taurus. PMID:35790909
Divergence of Biocrust Active Bacterial Communities in the Negev Desert During a Hydration-Desiccation Cycle. PMID:35788422
Salt flat microbial diversity and dynamics across salinity gradient. PMID:35788147
Oligofructose restores postprandial short-chain fatty acid levels during high-fat feeding. PMID:35785478
High Serum Vitamin D Concentrations, Induced via Diet, Trigger Immune and Intestinal Microbiota Alterations Leading to Type 1 Diabetes Protection in NOD Mice. PMID:35784365
Seasonal and spatial variability of zooplankton diversity in the Poyang Lake Basin using DNA metabarcoding. PMID:35784091
The Gut Microbiome of 54 Mammalian Species. PMID:35783446
Effects of Inoculation With Acinetobacter on Fermentation of Cigar Tobacco Leaves. PMID:35783443
Effects of Dietary Antimicrobial Growth Promoters on Performance Parameters and Abundance and Diversity of Broiler Chicken Gut Microbiome and Selection of Antibiotic Resistance Genes. PMID:35783415
Effect of Anthropogenic Aerosol Addition on Phytoplankton Growth in Coastal Waters: Role of Enhanced Phosphorus Bioavailability. PMID:35783404
Microbial Communities in Biocrusts Are Recruited From the Neighboring Sand at Coastal Dunes Along the Baltic Sea. PMID:35783389
Linkages of Various Calcium Sources on Immune Performance, Diarrhea Rate, Intestinal Barrier, and Post-gut Microbial Structure and Function in Piglets. PMID:35782941
The Preventive Effects of Fermented and Germinated Foxtail Millet Whole Grain on Kidney Damage in a Diabetic Mouse Model. PMID:35782913
Bacterial community in Sinonovacula constricta intestine and its relationship with culture environment. PMID:35781839
Houseflies harbor less diverse microbiota under laboratory conditions but maintain a consistent set of host-associated bacteria. PMID:35778448
Routes and rates of bacterial dispersal impact surface soil microbiome composition and functioning. PMID:35778440
The activity and functions of soil microbial communities in the Finnish sub-Arctic vary across vegetation types. PMID:35776963
Transfer of Nitrogen and Phosphorus From Cattle Manure to Soil and Oats Under Simulative Cattle Manure Deposition. PMID:35774448
Intestinal Microbial Composition of Children in a Randomized Controlled Trial of Probiotics to Treat Acute Gastroenteritis. PMID:35774405
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data. PMID:35773532
Phytogenic supplement containing menthol, carvacrol and carvone ameliorates gut microbiota and production performance of commercial layers. PMID:35773309
Effects of Habitat River Microbiome on the Symbiotic Microbiota and Multi-Organ Gene Expression of Captive-Bred Chinese Giant Salamander. PMID:35770173
Water Deficit History Selects Plant Beneficial Soil Bacteria Differently Under Conventional and Organic Farming. PMID:35770171
Diversity and Biogeography of Human Oral Saliva Microbial Communities Revealed by the Earth Microbiome Project. PMID:35770164
Ecological Drivers of the Soil Microbial Diversity and Composition in Primary Old-Growth Forest and Secondary Woodland in a Subtropical Evergreen Broad-Leaved Forest Biome in the Ailao Mountains, China. PMID:35770159
Antidepressant Shugan Jieyu Capsule Alters Gut Microbiota and Intestinal Microbiome Function in Rats With Chronic Unpredictable Mild Stress -Induced Depression. PMID:35770090
S097: a single, peri-operative antibiotic can persistently alter the post-operative gut microbiome after Roux-en-Y gastric bypass. PMID:35768736
Host lung microbiota promotes malaria-associated acute respiratory distress syndrome. PMID:35768411
Analyses of locomotion, wing morphology, and microbiome in Drosophila nigrosparsa after recovery from antibiotics. PMID:35765190
Seasonal phytoplankton and geochemical shifts in the subsurface chlorophyll maximum layer of a dimictic ferruginous lake. PMID:35765183
Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus-specific primers. PMID:35765179
Seasonality of parasitic and saprotrophic zoosporic fungi: linking sequence data to ecological traits. PMID:35764676
Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs. PMID:35761245
Genetic disruption of Arabidopsis secondary metabolite synthesis leads to microbiome-mediated modulation of nematode invasion. PMID:35760884
Analysis of Microbial Community, Volatile Flavor Compounds, and Flavor of Cigar Tobacco Leaves From Different Regions. PMID:35756070
Ectopic Colonization and Immune Landscapes of Periodontitis Microbiota in Germ-Free Mice With Streptozotocin-Induced Type 1 Diabetes Mellitus. PMID:35756043
Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling. PMID:35756038
Lipid Biomarkers From Microbial Mats on the McMurdo Ice Shelf, Antarctica: Signatures for Life in the Cryosphere. PMID:35756013
Gut Microbiota Characteristics Are Associated With Severity of Acute Radiation-Induced Esophagitis. PMID:35756007
Canopy and Understory Nitrogen Addition Alters Organic Soil Bacterial Communities but Not Fungal Communities in a Temperate Forest. PMID:35756006
Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern. PMID:35756004
Human gut microbiota composition and its predicted functional properties in people with western and healthy dietary patterns. PMID:35748920
Interactions among the mycobiome, bacteriome, inflammation, and diet in people living with HIV. PMID:35748016
Impact of the Gram-Negative-Selective Inhibitor MAC13243 on In Vitro Simulated Gut Microbiota. PMID:35745650
Escherichia/Shigella, SCFAs, and Metabolic Pathways-The Triad That Orchestrates Intestinal Dysbiosis in Patients with Decompensated Alcoholic Cirrhosis from Western Mexico. PMID:35744749
Culturable Bacterial Diversity from the Basaltic Subsurface of the Young Volcanic Island of Surtsey, Iceland. PMID:35744695
Microbial Interrelationships across Sites of Breastfeeding Mothers and Infants at 6 Weeks Postpartum. PMID:35744673
Interaction of Microbiota between Fish and the Environment of an In-Pond Raceway System in a Lake. PMID:35744661
Responses of Soil Microbiota to Different Control Methods of the Spartina alterniflora in the Yellow River Delta. PMID:35744640
The Microbiota-Gut-Brain Axis: Gut Microbiota Modulates Conspecific Aggression in Diversely Selected Laying Hens. PMID:35744601
Mineralogical and Genomic Constraints on the Origin of Microbial Mn Oxide Formation in Complexed Microbial Community at the Terrestrial Hot Spring. PMID:35743847
Not just a Snapshot: An Italian Longitudinal Evaluation of Stability of Gut Microbiota Findings in Parkinson's Disease. PMID:35741624
Microbial Consortia: An Engineering Tool to Suppress Clubroot of Chinese Cabbage by Changing the Rhizosphere Bacterial Community Composition. PMID:35741438
Gut Steroids and Microbiota: Effect of Gonadectomy and Sex. PMID:35740892
Gene Expression-Based Functional Differences between the Bladder Body and Trigonal Urothelium in Adolescent Female Patients with Micturition Dysfunction. PMID:35740457
Feeding a Saccharomyces cerevisiae Fermentation Product (Olimond BB) Does Not Alter the Fecal Microbiota of Thoroughbred Racehorses. PMID:35739833
Does Exposure of Broodstock to Dietary Soybean Meal Affect Its Utilization in the Offspring of Zebrafish (Danio rerio)? PMID:35739814
The influence of bioclimate on soil microbial communities of cork oak. PMID:35739482
Bacterial endophytes as indicators of susceptibility to Cercospora Leaf Spot (CLS) disease in Beta vulgaris L. PMID:35739218
Gut microbiota and metabolites associate with outcomes of immune checkpoint inhibitor-treated unresectable hepatocellular carcinoma. PMID:35738801
Maternal Fecal Microbes Contribute to Shaping the Early Life Assembly of the Intestinal Microbiota of Co-inhabiting Yak and Cattle Calves. PMID:35733965
Symbiotic Algae of Hydra viridissima Play a Key Role in Maintaining Homeostatic Bacterial Colonization. PMID:35733963
Chronic Pulmonary Disease Caused by Tsukamurella toyonakaense. PMID:35731181
Geographically driven differences in microbiomes of Acropora cervicornis originating from different regions of Florida's Coral Reef. PMID:35729906
Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems. PMID:35729677
Sparus aurata and Lates calcarifer skin microbiota under healthy and diseased conditions in UV and non-UV treated water. PMID:35729615
Lactococcus lactis NCDO2118 exerts visceral antinociceptive properties in rat via GABA production in the gastro-intestinal tract. PMID:35727704
Full-Length 16S rRNA Gene Sequences from Raw Sewage Samples Spanning Geographic and Seasonal Gradients in Conveyance Systems across the United States. PMID:35727055
Ulcerative Colitis Seems to Imply Oral Microbiome Dysbiosis. PMID:35723361
Shared Microbial Taxa Respond Predictably to Cyclic Time-Varying Oxygen Limitation in Two Disparate Soils. PMID:35722278
Partial Substation of Organic Fertilizer With Chemical Fertilizer Improves Soil Biochemical Attributes, Rice Yields, and Restores Bacterial Community Diversity in a Paddy Field. PMID:35720563
RNA-Seq Analysis of Developing Grains of Wheat to Intrigue Into the Complex Molecular Mechanism of the Heat Stress Response. PMID:35720556
A Low-Starch and High-Fiber Diet Intervention Impacts the Microbial Community of Raw Bovine Milk. PMID:35720468
Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients. PMID:35720435
Aging gut microbiota of wild macaques are equally diverse, less stable, but progressively personalized. PMID:35718778
Characterization of metal(loid)s and antibiotic resistance in bacteria of human gut microbiota from chronic kidney disease subjects. PMID:35715831
Spatio-temporal variation in the root-associated microbiota of orchard-grown apple trees. PMID:35715810
The Effect of Syringic Acid and Phenoxy Herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) on Soil, Rhizosphere, and Plant Endosphere Microbiome. PMID:35712561
Adipocere formation in biofilms as a first step in soft tissue preservation. PMID:35710834
Monitoring of benthic eukaryotic communities in two tropical coastal lagoons through eDNA metabarcoding: a spatial and temporal approximation. PMID:35710829
Identifying plant genes shaping microbiota composition in the barley rhizosphere. PMID:35710760
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. PMID:35710629
Host-genotype-dependent cecal microbes are linked to breast muscle metabolites in Chinese chickens. PMID:35707722
Factors Influencing Bacterial and Fungal Skin Communities of Montane Salamanders of Central Mexico. PMID:35705744
Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination. PMID:35705568
Influence of Agaricus bisporus establishment and fungicidal treatments on casing soil metataxonomy during mushroom cultivation. PMID:35701764
Child type 1 diabetes associated with mother vaginal bacteriome and mycobiome. PMID:35701558
Bacterial and fungal communities in tracheal aspirates of intubated COVID-19 patients: a pilot study. PMID:35701442
A dose-finding safety and feasibility study of oral activated charcoal and its effects on the gut microbiota in healthy volunteers not receiving antibiotics. PMID:35700156
Geographic Dispersal Limitation Dominated Assembly Processes of Bacterial Communities on Microplastics Compared to Water and Sediment. PMID:35695570
Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants. PMID:35695455
Metagenomics Reveals Dominant Unusual Sulfur Oxidizers Inhabiting Active Hydrothermal Chimneys From the Southwest Indian Ridge. PMID:35694283
Enrichment of sulphate-reducers and depletion of butyrate-producers may be hyperglycaemia signatures in the diabetic oral microbiome. PMID:35694216
Individual Sweet Taste Perception Influences Salivary Characteristics After Orosensory Stimulation With Sucrose and Noncaloric Sweeteners. PMID:35694162
The microbiome of lung cancer tissue and its association with pathological and clinical parameters. PMID:35693079
Comparison of Dynamics of Udder Skin Microbiota From Grazing Yak and Cattle During the Perinatal Period on the Qinghai-Tibetan Plateau. PMID:35692295
In-depth characterization of denitrifier communities across different soil ecosystems in the tundra. PMID:35690846
Effect of novel Lactobacillus paracaesi microcapsule on growth performance, gut health and microbiome community of broiler chickens. PMID:35689995
Schoolyard Biodiversity Determines Short-Term Recovery of Disturbed Skin Microbiota in Children. PMID:35689685
Linking gastrointestinal microbiota and metabolome dynamics to clinical outcomes in paediatric haematopoietic stem cell transplantation. PMID:35689247
Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom. PMID:35688919
A highly conserved core bacterial microbiota with nitrogen-fixation capacity inhabits the xylem sap in maize plants. PMID:35688828
Barley Rhizosphere Microbiome Transplantation - A Strategy to Decrease Susceptibility of Barley Grown in Soils With Low Microbial Diversity to Powdery Mildew. PMID:35685930
Unearthing Shifts in Microbial Communities Across a Soil Disturbance Gradient. PMID:35685929
The Impact of Probiotic Supplementation on Cognitive, Pathological and Metabolic Markers in a Transgenic Mouse Model of Alzheimer's Disease. PMID:35685773
Gut Microbiota Modulation, Anti-Diabetic and Anti-Inflammatory Properties of Polyphenol Extract from Mung Bean Seed Coat (Vigna radiata L.). PMID:35684075
Gut metabolites predict Clostridioides difficile recurrence. PMID:35681218
Effects of cage versus floor rearing system on goose intestinal histomorphology and cecal microbial composition. PMID:35679667
A transcriptomic atlas underlying developmental plasticity of seasonal forms of Bicyclus anynana butterflies. PMID:35679434
DNA/RNA Preservation in Glacial Snow and Ice Samples. PMID:35677909
Oil Absorbent Polypropylene Particles Stimulate Biodegradation of Crude Oil by Microbial Consortia. PMID:35677906
Rhizosphere Soil Microbial Community Under Ice in a High-Latitude Wetland: Different Community Assembly Processes Shape Patterns of Rare and Abundant Microbes. PMID:35677902
Effects of Lightning on Rhizosphere Soil Properties, Bacterial Communities, and Active Components of Camellia sinensis var. assamica. PMID:35677900
Identification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales. PMID:35676322
Disturbance-based management of ecosystem services and disservices in partial nitritation-anammox biofilms. PMID:35676296
Host Age Prediction from Fecal Microbiota Composition in Male C57BL/6J Mice. PMID:35674443
Gut Microbiome 16S rRNA Gene Amplicon Taxonomic Profiling of Hospitalized Moroccan COVID-19 Patients. PMID:35674437
Benthic Biofilms in Glacier-Fed Streams from Scandinavia to the Himalayas Host Distinct Bacterial Communities Compared with the Streamwater. PMID:35674429
Dehalogenation of Chlorinated Ethenes to Ethene by a Novel Isolate, "Candidatus Dehalogenimonas etheniformans". PMID:35674428
Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions. PMID:35674393
A Pilot Study Investigating Faecal Microbiota After Two Dietary Interventions in Children with Juvenile Idiopathic Arthritis. PMID:35672613
Metagenomic profiles of the early life microbiome of Indonesian inpatient neonates and their influence on clinical characteristics. PMID:35672441
Effects of short-interval reburns in the boreal forest on soil bacterial communities compared to long-interval reburns. PMID:35671126
Rationale and study design of Randomized Controlled Trial of Dietary Supplementation with prune (dried plums) on bone density, geometry, and estimated bone strength in postmenopausal women: The Prune study. PMID:35669487
Intestinal Barrier Dysfunction in the Absence of Systemic Inflammation Fails to Exacerbate Motor Dysfunction and Brain Pathology in a Mouse Model of Parkinson's Disease. PMID:35665034
Comparative Analysis of the Gut Microbiota of Mandarin Fish (Siniperca chuatsi) Feeding on Compound Diets and Live Baits. PMID:35664316
Synergistic Interaction of Low Salinity Stress With Vibrio Infection Causes Mass Mortalities in the Oyster by Inducing Host Microflora Imbalance and Immune Dysregulation. PMID:35663972
Methanotrophy Alleviates Nitrogen Constraint of Carbon Turnover by Rice Root-Associated Microbiomes. PMID:35663885
Mapping Microbial Abundance and Prevalence to Changing Oxygen Concentration in Deep-Sea Sediments Using Machine Learning and Differential Abundance. PMID:35663876
Diversity Shifts in the Root Microbiome of Cucumber Under Different Plant Cultivation Substrates. PMID:35663868
Microbial Community Analysis and Food Safety Practice Survey-Based Hazard Identification and Risk Assessment for Controlled Environment Hydroponic/Aquaponic Farming Systems. PMID:35663856
The validation of the existence of the entero-mammary pathway and the assessment of the differences of the pathway between first and third parity sows. PMID:35663613
Characteristics of the Intestinal Flora of TPOAb-Positive Women With Subclinical Hypothyroidism in the Second Trimester of Pregnancy: A Single-Center Prospective Cohort Study. PMID:35663464
Combined Non-Invasive Prediction and New Biomarkers of Oral and Fecal Microbiota in Patients With Gastric and Colorectal Cancer. PMID:35663463
Characteristics of miRNAs Present in Bovine Sperm and Associations With Differences in Fertility. PMID:35663333
Effect of Nosema ceranae infection and season on the gut bacteriome composition of the European honeybee (Apis mellifera). PMID:35662256
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. PMID:35659305
Analysis of ROS-Triggered Changes in the Transcriptome. PMID:35657527
Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle. PMID:35656319
"Alterations in the Skin Microbiota Are Associated With Symptom Severity in Mycosis Fungoides". PMID:35656034
Characterization of intestinal microbiota in normal weight and overweight Border Collie and Labrador Retriever dogs. PMID:35655089
The microbiome of cryospheric ecosystems. PMID:35655063
Seasonality of Glacial Snow and Ice Microbial Communities. PMID:35651494
Comparative Analysis of the Microbial Community Structures Between Healthy and Anthracnose-Infected Strawberry Rhizosphere Soils Using Illumina Sequencing Technology in Yunnan Province, Southwest of China. PMID:35651487
Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets. PMID:35650642
The sanitary indoor environment-a potential source for intact human-associated anaerobes. PMID:35650275
Short chain fatty acids-producing and mucin-degrading intestinal bacteria predict the progression of early Parkinson's disease. PMID:35650236
Cover crop-driven shifts in soil microbial communities could modulate early tomato biomass via plant-soil feedbacks. PMID:35650228
Intestinal inflammation alters the antigen-specific immune response to a skin commensal. PMID:35649365
Bioturbation Intensity Modifies the Sediment Microbiome and Biochemistry and Supports Plant Growth in an Arid Mangrove System. PMID:35647697
Phylogenomic Analysis of Metagenome-Assembled Genomes Deciphered Novel Acetogenic Nitrogen-Fixing Bathyarchaeota from Hot Spring Sediments. PMID:35647693
Subgingival Microbiome in Pregnancy and a Potential Relationship to Early Term Birth. PMID:35646730
ITAS: Integrated Transcript Annotation for Small RNA. PMID:35645337
Effects of enriched seafood sticks (heat-inactivated B. animalis subsp. lactis CECT 8145, inulin, omega-3) on cardiometabolic risk factors and gut microbiota in abdominally obese subjects: randomized controlled trial. PMID:35643872
Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection. PMID:35643532
Combining galacto-oligosaccharides and 2'-fucosyllactose alters their fermentation kinetics by infant fecal microbiota and influences AhR-receptor dependent cytokine responses in immature dendritic cells. PMID:35642586
Biological Microbial Interactions from Cooccurrence Networks in a High Mountain Lacustrine District. PMID:35642514
Ancestral State Reconstructions Trace Mitochondria But Not Phagocytosis to the Last Eukaryotic Common Ancestor. PMID:35642316
Development of gut microbiota during the first 2 years of life. PMID:35641542
5NosoAE: a web server for nosocomial bacterial antibiogram investigation and epidemiology survey. PMID:35639518
Disentangling the Mechanisms Shaping the Prokaryotic Communities in a Eutrophic Bay. PMID:35638815
Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an In Vitro Model of the Human Gut. PMID:35638779
Fecal microbiota and bile acids in IBD patients undergoing screening for colorectal cancer. PMID:35638103
Association of Human Intestinal Microbiota with Lifestyle Activity, Adiposity, and Metabolic Profiles in Thai Children with Obesity. PMID:35637874
New Insights into the Taxonomy of Bacteria in the Genomic Era and a Case Study with Rhizobia. PMID:35637770
Unsalable Vegetables Ensiled With Sorghum Promote Heterofermentative Lactic Acid Bacteria and Improve in vitro Rumen Fermentation. PMID:35633729
Regulating Root Fungal Community Using Mortierella alpina for Fusarium oxysporum Resistance in Panax ginseng. PMID:35633727
Dietary Vitamin B1 Intake Influences Gut Microbial Community and the Consequent Production of Short-Chain Fatty Acids. PMID:35631219
Health Status of Mytilus chilensis from Intensive Culture Areas in Chile Assessed by Molecular, Microbiological, and Histological Analyses. PMID:35631015
Comparison of the Microbiome of Artisanal Homemade and Industrial Feta Cheese through Amplicon Sequencing and Shotgun Metagenomics. PMID:35630516
A Cyanobacteria Enriched Layer of Shark Bay Stromatolites Reveals a New Acaryochloris Strain Living in Near Infrared Light. PMID:35630477
Microbial Consortium Associated with Crustacean Shells Composting. PMID:35630475
Composition, Structure and Diversity of Soil Bacterial Communities before, during and after Transit through the Gut of the Earthworm Aporrectodea caliginosa. PMID:35630467
The Microbial Community of the Respiratory Tract of Commercial Chickens and Turkeys. PMID:35630431
Endosymbiotic Bacterial Diversity of Corn Leaf Aphid, Rhopalosiphum maidis Fitch (Hemiptera: Aphididae) Associated with Maize Management Systems. PMID:35630383
Gradual Enhancement of the Assemblage Stability of the Reed Rhizosphere Microbiome with Recovery Time. PMID:35630381
Suppressive Effect of Soil Microbiomes Associated with Tropical Fruit Trees on Meloidogyne enterolobii. PMID:35630339
Litter Management Strategies and Their Impact on the Environmental and Respiratory Microbiome Might Influence Health in Poultry. PMID:35630323
Bladder Microbiota Are Associated with Clinical Conditions That Extend beyond the Urinary Tract. PMID:35630319
Seasonal and Zonal Succession of Bacterial Communities in North Sea Salt Marsh Sediments. PMID:35630305
Impact of Climate and Slope Aspects on the Composition of Soil Bacterial Communities Involved in Pedogenetic Processes along the Chilean Coastal Cordillera. PMID:35630293
Microbiomics Revealed the Disturbance of Intestinal Balance in Rabbits with Diarrhea Caused by Stopping the Use of an Antibiotic Diet. PMID:35630287
Consumption of Tritordeum Bread Reduces Immunogenic Gluten Intake without Altering the Gut Microbiota. PMID:35627010
Inhaled Corticosteroids Selectively Alter the Microbiome and Host Transcriptome in the Small Airways of Patients with Chronic Obstructive Pulmonary Disease. PMID:35625847
Antibiotic Treatment during Pregnancy Alters Offspring Gut Microbiota in a Sex-Dependent Manner. PMID:35625778
Gut Microbiome Suffers from Hematopoietic Stem Cell Transplantation in Childhood and Its Characteristics Are Positively Associated with Intra-Hospital Physical Exercise. PMID:35625513
Compositional Shifts in Microbial Diversity under Traditional Banana Cropping Systems of Sub-Saharan Africa. PMID:35625484
Paenibacillus sp. Strain OL15 Immobilized in Agar as a Potential Bioremediator for Waste Lubricating Oil-Contaminated Soils and Insights into Soil Bacterial Communities Affected by Inoculations of the Strain and Environmental Factors. PMID:35625455
Soil Mineral Composition and Salinity Are the Main Factors Regulating the Bacterial Community Associated with the Roots of Coastal Sand Dune Halophytes. PMID:35625422
Taxifolin Modulates Transcriptomic Response to Heat Stress in Rainbow Trout, Oncorhynchus mykiss. PMID:35625167
Microbiota Composition of Mucosa and Interactions between the Microbes of the Different Gut Segments Could Be a Factor to Modulate the Growth Rate of Broiler Chickens. PMID:35625142
Microbial Diversity of the Chinese Tiger Frog (Hoplobatrachus rugulosus) on Healthy versus Ulcerated Skin. PMID:35625087
The functional evolution of termite gut microbiota. PMID:35624491
Gallbladder microbiota composition is associated with pancreaticobiliary and gallbladder cancer prognosis. PMID:35624429
Fecal Microbiota Signatures Are Not Consistently Related to Symptom Severity in Irritable Bowel Syndrome. PMID:35624331
Early impacts of climate change on a coastal marine microbial mat ecosystem. PMID:35622915
Spatio-Temporal Monitoring of Benthic Anatoxin-a-Producing Tychonema sp. in the River Lech, Germany. PMID:35622603
Exploring the Effects of Six Weeks of Resistance Training on the Fecal Microbiome of Older Adult Males: Secondary Analysis of a Peanut Protein Supplemented Randomized Controlled Trial. PMID:35622473
Phage Infection Benefits Marine Diatom Phaeodactylum tricornutum by Regulating the Associated Bacterial Community. PMID:35622094
Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09. PMID:35621971
The Chemo-Gut Pilot Study: Associations between Gut Microbiota, Gastrointestinal Symptoms, and Psychosocial Health Outcomes in a Cross-Sectional Sample of Young Adult Cancer Survivors. PMID:35621633
Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes. PMID:35620097
The Gut Microbiota of Healthy and Flavobacterium psychrophilum-Infected Rainbow Trout Fry Is Shaped by Antibiotics and Phage Therapies. PMID:35620089
Comparative Analyses of Scylla olivacea Gut Microbiota Composition and Function Suggest the Capacity for Polyunsaturated Fatty Acid Biosynthesis. PMID:35618944
Fusarium fruiting body microbiome member Pantoea agglomerans inhibits fungal pathogenesis by targeting lipid rafts. PMID:35618775
Excess Growth Hormone Alters the Male Mouse Gut Microbiome in an Age-dependent Manner. PMID:35617141
Bacterial Colonisation: From Airborne Dispersal to Integration Within the Soil Community. PMID:35615521
Multiple Groups of Methanotrophic Bacteria Mediate Methane Oxidation in Anoxic Lake Sediments. PMID:35615497
Sexually transmitted infection screening to prevent adverse birth and newborn outcomes: study protocol for a randomized-controlled hybrid-effectiveness trial. PMID:35610666
Spatial Variation and Environmental Parameters Affecting the Abundant and Rare Communities of Bacteria and Archaea in the Sediments of Tropical Urban Reservoirs. PMID:35610383
Longitudinal urinary microbiome characteristics in women with urgency urinary incontinence undergoing sacral neuromodulation. PMID:35608624
Cold Seeps on the Passive Northern U.S. Atlantic Margin Host Globally Representative Members of the Seep Microbiome with Locally Dominant Strains of Archaea. PMID:35607968
Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes. PMID:35606844
A crosstalk between gut and brain in sepsis-induced cognitive decline. PMID:35606817
Species- and strain-level assessment using rrn long-amplicons suggests donor's influence on gut microbial transference via fecal transplants in metabolic syndrome subjects. PMID:35604764
Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep. PMID:35604226
Correlation Between Salivary Microbiome of Parotid Glands and Clinical Features in Primary Sjögren's Syndrome and Non-Sjögren's Sicca Subjects. PMID:35603219
Highly transmissible cytoplasmic incompatibility by the extracellular insect symbiont Spiroplasma. PMID:35602967
Changes in Alpine Soil Bacterial Communities With Altitude and Slopes at Mount Shergyla, Tibetan Plateau: Diversity, Structure, and Influencing Factors. PMID:35602088
Microbiota Comparison of Amur ide (Leuciscus waleckii) Intestine and Waters at Alkaline Water and Freshwater as the Living Environment. PMID:35602074
Diet and Host Genetics Drive the Bacterial and Fungal Intestinal Metatranscriptome of Gilthead Sea Bream. PMID:35602034
Polyphasic Analysis Reveals Potential Petroleum Hydrocarbon Degradation and Biosurfactant Production by Rare Biosphere Thermophilic Bacteria From Deception Island, an Active Antarctic Volcano. PMID:35602031
Resistant Maltodextrin Intake Reduces Virulent Metabolites in the Gut Environment: A Randomized Control Study in a Japanese Cohort. PMID:35602030
Gut microbiota predicts body fat change following a low-energy diet: a PREVIEW intervention study. PMID:35599315
Alterations of the gut microbial community structure and function with aging in the spontaneously hypertensive stroke prone rat. PMID:35595870
Influence of diet on acute endocannabinoidome mediator levels post exercise in active women, a crossover randomized study. PMID:35595747
Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding. PMID:35594271
Incidence Rates of Root Rot in Sweetpotato Caused by Cultivation Soil and Soil Microorganisms During Storage Periods. PMID:35592576
Biogeography of Southern Ocean Active Prokaryotic Communities Over a Large Spatial Scale. PMID:35592001
Bacteria Community Inhabiting Heterobasidion Fruiting Body and Associated Wood of Different Decay Classes. PMID:35591994
Microbiomes of the Sydney Rock Oyster are acquired through both vertical and horizontal transmission. PMID:35590396
Consistency and Variation in the Kelp Microbiota: Patterns of Bacterial Community Structure Across Spatial Scales. PMID:35589992
A transmissible γδ intraepithelial lymphocyte hyperproliferative phenotype is associated with the intestinal microbiota and confers protection against acute infection. PMID:35589986
Plant growth-promoting rhizobacteria Burkholderia vietnamiensis B418 inhibits root-knot nematode on watermelon by modifying the rhizosphere microbial community. PMID:35589885
Large Comparative Analyses of Primate Body Site Microbiomes Indicate that the Oral Microbiome Is Unique among All Body Sites and Conserved among Nonhuman Primates. PMID:35587638
Metabarcoding of insect-associated fungal communities: a comparison of internal transcribed spacer (ITS) and large-subunit (LSU) rRNA markers. PMID:35585929
Availability of vitamin B12 and its lower ligand intermediate α-ribazole impact prokaryotic and protist communities in oceanic systems. PMID:35585186
CBEA: Competitive balances for taxonomic enrichment analysis. PMID:35584140
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants. PMID:35582907
Acacia Fiber Protects the Gut from Extended-Spectrum Beta-Lactamase (ESBL)-Producing Escherichia coli Colonization Enabled by Antibiotics. PMID:35582906
Occurrence of Ornithobacterium Rhinotracheale in Polish Turkey Flocks. PMID:35582491
Genetic relationships between efficiency traits and gut microbiota traits in growing pigs being fed with a conventional or a high-fiber diet. PMID:35579995
Prophylactic Delivery of a Bacteriophage Cocktail in Feed Significantly Reduces Salmonella Colonization in Pigs. PMID:35579475
Insights into Prokaryotic Community and Its Potential Functions in Nitrogen Metabolism in the Bay of Bengal, a Pronounced Oxygen Minimum Zone. PMID:35579458
Gut Microbial Stability is Associated with Greater Endurance Performance in Athletes Undertaking Dietary Periodization. PMID:35579384
SKIOME Project: a curated collection of skin microbiome datasets enriched with study-related metadata. PMID:35576001
Molecular analysis of dominant paranasal sinus bacteria in patients with and without chronic rhinosinusitis. PMID:35575834
Spatiotemporal Heterogeneity and Intragenus Variability in Rhizobacterial Associations with Brassica rapa Growth. PMID:35575562
Taxonomic and Functional Fecal Microbiota Signatures Associated With Insulin Resistance in Non-Diabetic Subjects With Overweight/Obesity Within the Frame of the PREDIMED-Plus Study. PMID:35574036
A high-fibre personalised dietary advice given via a web tool reduces constipation complaints in adults. PMID:35573462
Chronic exposure to high-density polyethylene microplastic through feeding alters the nutrient metabolism of juvenile yellow perch (Perca flavescens). PMID:35573095
Association Between Human Gut Microbiome and N-Glycan Composition of Total Plasma Proteome. PMID:35572712
Effects of Different Formulations of Glyphosate on Rumen Microbial Metabolism and Bacterial Community Composition in the Rumen Simulation Technique System. PMID:35572709
Responses of Biocrust and Associated Soil Bacteria to Novel Climates Are Not Tightly Coupled. PMID:35572693
Soil Environments Influence Gut Prokaryotic Communities in the Larvae of the Invasive Japanese Beetle Popillia japonica Newman. PMID:35572692
Evaluation of the Effects of a Short Supplementation With Tannins on the Gut Microbiota of Healthy Subjects. PMID:35572677
Effects of Altitude on the Digestion Performance, Serum Antioxidative Characteristics, Rumen Fermentation Parameters, and Rumen Bacteria of Sanhe Heifers. PMID:35572662
Microbial Community-Level Physiological Profiles and Genetic Prokaryotic Structure of Burned Soils Under Mediterranean Sclerophyll Forests in Central Chile. PMID:35572632
Differential response of soil microbial and animal communities along the chronosequence of Cunninghamia lanceolata at different soil depth levels in subtropical forest ecosystem. PMID:35572399
Fecal microbiota transplantation is safe and tolerable in patients with multiple sclerosis: A pilot randomized controlled trial. PMID:35571974
Effects of Different Sources of Calcium in the Diet on Growth Performance, Blood Metabolic Parameters, and Intestinal Bacterial Community and Function of Weaned Piglets. PMID:35571955
Probiotic Mixture Containing Lactobacillus helveticus, Bifidobacterium longum and Lactiplantibacillus plantarum Affects Brain Responses Toward an Emotional Task in Healthy Subjects: A Randomized Clinical Trial. PMID:35571902
Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line. PMID:35568809
Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria. PMID:35568028
Effect of Processing Treatment and Modified Atmosphere Packing on Carrot's Microbial Community Structure by Illumina MiSeq Sequencing. PMID:35566181
Associations between Frequency of Culinary Herb Use and Gut Microbiota. PMID:35565947
Gut Microbiota and Phenotypic Changes Induced by Ablation of Liver- and Intestinal-Type Fatty Acid-Binding Proteins. PMID:35565729
Influence of Aging, Macronutrient Composition and Time-Restricted Feeding on the Fischer344 x Brown Norway Rat Gut Microbiota. PMID:35565725
The Multi-Omics Analysis Revealed a Metabolic Regulatory System of Cecum in Rabbit with Diarrhea. PMID:35565618
Effect of Two Soybean Varieties Treated with Different Heat Intensities on Ileal and Caecal Microbiota in Broiler Chickens. PMID:35565536
Longitudinal Changes of the Ruminal Microbiota in Angus Beef Steers. PMID:35565493
Long-Term Heat Selection of the Coral Endosymbiont Cladocopium C1acro (Symbiodiniaceae) Stabilizes Associated Bacterial Communities. PMID:35563303
Effects of bowel preparation on intestinal bacterial associated urine and faecal metabolites and the associated faecal microbiome. PMID:35562657
Biocontamination and diversity of epilithic bacteria and fungi colonising outdoor stone and mortar sculptures. PMID:35562489
Microbial functional changes mark irreversible course of Tibetan grassland degradation. PMID:35562338
Shifts in microbial community structure and diversity in a novel waterfall biofilm reactor combined with MBBR under light and dark conditions. PMID:35557833
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato. PMID:35551312
Composition and Diversity of Soil Microbial Community Associated With Land Use Types in the Agro-Pastoral Area in the Upper Yellow River Basin. PMID:35548288
Variation in Bacterial Community Structures and Functions as Indicators of Response to the Restoration of Suaeda salsa: A Case Study of the Restoration in the Beidaihe Coastal Wetland. PMID:35547109
The effects of fish meal substitution by clam meal on the growth and health of Florida pompano (Trachinotus carolinus). PMID:35545626
The Microbiota of a Mite Prey-Predator System on Different Host Plants Are Characterized by Dysbiosis and Potential Functional Redundancy. PMID:35543735
Influence of oxygen exposure on fermentation process and sensory qualities of Sichuan pickle (paocai). PMID:35540217
Identification of a Gut Commensal That Compromises the Blood Pressure-Lowering Effect of Ester Angiotensin-Converting Enzyme Inhibitors. PMID:35538603
A total infectome approach to understand the etiology of infectious disease in pigs. PMID:35538563
The importance of conditionally rare taxa for the assembly and interaction of fungal communities in mangrove sediments. PMID:35538375
A randomized controlled trial for response of microbiome network to exercise and diet intervention in patients with nonalcoholic fatty liver disease. PMID:35538056
Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. PMID:35536036
Simulated Leaching of Foliar Applied Copper Bactericides on the Soil Microbiome Utilizing Various Beta Diversity Resemblance Measurements. PMID:35536029
Nitrogen fixation and other biogeochemically important features of Atacama Desert giant horsetail plant microbiomes inferred from metagenomic contig analysis. PMID:35533355
A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota. PMID:35533202
Dysbiosis in the Gut Microbiota in Patients with Inflammatory Bowel Disease during Remission. PMID:35532243
Black Soldier Fly Larvae Influence Internal and Substrate Bacterial Community Composition Depending on Substrate Type and Larval Density. PMID:35532232
Yiqi-Bushen-Tiaozhi Recipe Attenuated High-Fat and High-Fructose Diet Induced Nonalcoholic Steatohepatitis in Mice via Gut Microbiota. PMID:35531334
Choice of 16S Ribosomal RNA Primers Impacts Male Urinary Microbiota Profiling. PMID:35531325
Small Intestine Microbiome and Metabolome of High and Low Residual Feed Intake Angus Heifers. PMID:35531283
Differential Effects of Natural Grazing and Feedlot Feeding on Yak Fecal Microbiota. PMID:35529830
Microbial communities in carbonate precipitates from drip waters in Nerja Cave, Spain. PMID:35529484
Modulation of JNK-1/ β-catenin signaling by Lactobacillus casei, inulin and their combination in 1,2-dimethylhydrazine-induced colon cancer in mice. PMID:35528422
Trace amounts of antibiotic altered metabolomic and microbial profiles of weaned pigs infected with a pathogenic E. coli. PMID:35527278
Long-term patterns of an interconnected core marine microbiota. PMID:35526063
Glycyrrhiza uralensis Fisch. Root-associated microbiota: the multifaceted hubs associated with environmental factors, growth status and accumulation of secondary metabolites. PMID:35526053
Symbiont transmission in marine sponges: reproduction, development, and metamorphosis. PMID:35524305
Analysis of bacterial and fungal communities in fermented fish (pla-ra) from Northeast Thailand. PMID:35524014
Microbial community functioning during plant litter decomposition. PMID:35523988
How do turbidite systems behave from the hydrogeological point of view? New insights and open questions coming from an interdisciplinary work in southern Italy. PMID:35522687
Microbiota Associated With Cholesteatoma Tissue in Chronic Suppurative Otitis Media. PMID:35521215
Fungal community analysis in seawater of the Mariana Trench as estimated by Illumina HiSeq. PMID:35518513
Oral Shedding of an Oncogenic Virus Alters the Oral Microbiome in HIV+ Patients. PMID:35516440
Analysis of Gut Microbiota and Metabolites in Diannan Small Ear Sows at Diestrus and Metestrus. PMID:35516431
Microbiome Analysis of Malacopathogenic Nematodes Suggests No Evidence of a Single Bacterial Symbiont Responsible for Gastropod Mortality. PMID:35515005
Temporal Changes in Gut Microbiota Composition and Pollen Diet Associated with Colony Weakness of a Stingless Bee. PMID:35513592
Potential effect of two Bacillus probiotic strains on performance and fecal microbiota of breeding sows and their piglets. PMID:35512239
Rumen sampling methods bias bacterial communities observed. PMID:35511785
Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff. PMID:35507593
No Guts About It: Captivity, But Not Neophobia Phenotype, Influences the Cloacal Microbiome of House Sparrows (Passer domesticus). PMID:35505795
Cereal type and combined xylanase/glucanase supplementation influence the cecal microbiota composition in broilers. PMID:35505382
Beyond the gastrointestinal tract: oral and sex-specific skin microbiota are associated with hypertension in rats with genetic disparities. PMID:35503026
Evidence of multiple genome duplication events in Mytilus evolution. PMID:35501689
Sugars dominate the seagrass rhizosphere. PMID:35501482
Salinity Impact on Composition and Activity of Nitrate-Reducing Fe(II)-Oxidizing Microorganisms in Saline Lakes. PMID:35499328
Dendrobium officinale leaf polysaccharides ameliorated hyperglycemia and promoted gut bacterial associated SCFAs to alleviate type 2 diabetes in adult mice. PMID:35498995
Quantifying stream periphyton assemblage responses to nutrient amendments with a molecular approach. PMID:35498625
Microbial Cross-Talk: Dissecting the Core Microbiota Associated With Flue-Cured Tobacco (Nicotiana tabacum) Plants Under Healthy and Diseased State. PMID:35495684
High-Resolution Screening for Marine Prokaryotes and Eukaryotes With Selective Preference for Polyethylene and Polyethylene Terephthalate Surfaces. PMID:35495680
Heat Stress Altered the Vaginal Microbiome and Metabolome in Rabbits. PMID:35495670
Comparative Genomics of Members of the Genus Defluviicoccus With Insights Into Their Ecophysiological Importance. PMID:35495637
Bacteroides ovatus colonization influences the abundance of intestinal short chain fatty acids and neurotransmitters. PMID:35494230
Gut Dysbiosis in Ocular Mucous Membrane Pemphigoid. PMID:35493740
Recently Evolved Francisella-Like Endosymbiont Outcompetes an Ancient and Evolutionarily Associated Coxiella-Like Endosymbiont in the Lone Star Tick (Amblyomma americanum) Linked to the Alpha-Gal Syndrome. PMID:35493735
Bacterial microbiomes from mucus and breath of southern resident killer whales (Orcinus orca). PMID:35492424
Caspase-8 in endothelial cells maintains gut homeostasis and prevents small bowel inflammation in mice. PMID:35491615
Host-Associated Bacterial Communities Vary Between Daphnia galeata Genotypes but Not by Host Genetic Distance. PMID:35486140
Gut microbiota of ring-tailed lemurs (Lemur catta) vary across natural and captive populations and correlate with environmental microbiota. PMID:35484581
Insights into the microbiome assembly during different growth stages and storage of strawberry plants. PMID:35484554
Gut microbiota alterations in critically ill older patients: a multicenter study. PMID:35484500
The car tank lid bacteriome: a reservoir of bacteria with potential in bioremediation of fuel. PMID:35484166
Tissue remodeling by an opportunistic pathogen triggers allergic inflammation. PMID:35483356
Response of Plant-Associated Microbiome to Plant Root Colonization by Exogenous Bacterial Endophyte in Perennial Crops. PMID:35479645
Maternal Dietary Betaine Prevents High-Fat Diet-Induced Metabolic Disorders and Gut Microbiota Alterations in Mouse Dams and Offspring From Young to Adult. PMID:35479641
Influence of Association Network Properties and Ecological Assembly of the Foliar Fugal Community on Crop Quality. PMID:35479639
The Microbial Quality of Commercial Chopped Romaine Lettuce Before and After the "Use By" Date. PMID:35479635
Changes in Rumen Bacterial Community Induced by the Dietary Physically Effective Neutral Detergent Fiber Levels in Goat Diets. PMID:35479630
Bacterial Dynamics and Their Influence on the Biogeochemical Cycles in a Subtropical Hypereutrophic Lake During the Rainy Season. PMID:35479621
Comparison of Actinobacteria communities from human-impacted and pristine karst caves. PMID:35478281
Comprehensive human amniotic fluid metagenomics supports the sterile womb hypothesis. PMID:35477737
Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic. PMID:35477720
Proton pump inhibitors induce changes in the gut microbiome composition of systemic lupus erythematosus patients. PMID:35477382
Prevalence and characterization of Ice Nucleation Active (INA) bacteria from rainwater in Indonesia. PMID:35477335
Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment. PMID:35475656
Multiple sclerosis patients have an altered gut mycobiome and increased fungal to bacterial richness. PMID:35472144
Genome sequences of Rhizopogon roseolus, Mariannaea elegans, Myrothecium verrucaria, and Sphaerostilbella broomeana and the identification of biosynthetic gene clusters for fungal peptide natural products. PMID:35471554
Microbiability and microbiome-wide association analyses of feed efficiency and performance traits in pigs. PMID:35468740
Microbial Diversity and Composition in Six Different Gastrointestinal Sites among Participants Undergoing Upper Gastrointestinal Endoscopy in Henan, China. PMID:35467373
Acromegaly is associated with a distinct oral and gut microbiota. PMID:35467272
Gut Microbiome Signatures Are Predictive of Cognitive Impairment in Hypertension Patients-A Cohort Study. PMID:35464979
Marine Vertebrates Impact the Bacterial Community Composition and Food Webs of Antarctic Microbial Mats. PMID:35464973
Protist Predation Influences the Temperature Response of Bacterial Communities. PMID:35464948
Bio-Matrix Pot Addition Enhanced the Vegetation Process of Iron Tailings by Pennisetum giganteum. PMID:35464933
Bacteria, Protists, and Fungi May Hold Clues of Seamount Impact on Diversity and Connectivity of Deep-Sea Pelagic Communities. PMID:35464911
Vaginal Microbiota Diversity in Response to Lipopolysaccharide in Gilts Housed Under Three Housing Systems. PMID:35464863
Long-Term Stability of Bacterial Associations in a Microcosm of Ostreococcus tauri (Chlorophyta, Mamiellophyceae). PMID:35463414
Prolonged acetogenic phase and biological succession during anaerobic digestion using swine manure. PMID:35460047
The gut fungal and bacterial microbiota in pediatric patients with inflammatory bowel disease introduced to treatment with anti-tumor necrosis factor-α. PMID:35459927
A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women. PMID:35459771
The Effects of High Fiber Rye, Compared to Refined Wheat, on Gut Microbiota Composition, Plasma Short Chain Fatty Acids, and Implications for Weight Loss and Metabolic Risk Factors (the RyeWeight Study). PMID:35458231
Abundant Species Diversity and Essential Functions of Bacterial Communities Associated with Dinoflagellates as Revealed from Metabarcoding Sequencing for Laboratory-Raised Clonal Cultures. PMID:35457312
Responses of Soil Microbial Communities and Networks to Precipitation Change in a Typical Steppe Ecosystem of the Loess Plateau. PMID:35456868
Temporal and Spatial Patterns of Sediment Microbial Communities and Driving Environment Variables in a Shallow Temperate Mountain River. PMID:35456866
Road Salt versus Urban Snow Effects on Lake Microbial Communities. PMID:35456853
Yeasts Inhabiting Extreme Environments and Their Biotechnological Applications. PMID:35456844
Responses of Phyllosphere Microbiome to Ozone Stress: Abundance, Community Compositions and Functions. PMID:35456732
Ocular Microbiome in a Group of Clinically Healthy Horses. PMID:35454190
Phylogeny and Metabolic Potential of the Candidate Phylum SAR324. PMID:35453798
The Self-Organization of Marine Microbial Networks under Evolutionary and Ecological Processes: Observations and Modeling. PMID:35453791
Heart Failure Severity Closely Correlates with Intestinal Dysbiosis and Subsequent Metabolomic Alterations. PMID:35453559
The Australian dingo is an early offshoot of modern breed dogs. PMID:35452284
Rifaximin Ameliorates Non-alcoholic Steatohepatitis in Mice Through Regulating gut Microbiome-Related Bile Acids. PMID:35450049
Dynamics of maternal gene expression in Rhodnius prolixus. PMID:35449214
Plasma branched-chain and aromatic amino acids correlate with the gut microbiota and severity of Parkinson's disease. PMID:35449203
An Integrative View of the Phyllosphere Mycobiome of Native Rubber Trees in the Brazilian Amazon. PMID:35448604
What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age. PMID:35447907
Bacterial Communities in the Feces of Laboratory Reared Gampsocleis gratiosa (Orthoptera: Tettigoniidae) across Different Developmental Stages and Sexes. PMID:35447806
Respiratory Influenza Virus Infection Causes Dynamic Tuft Cell and Innate Lymphoid Cell Changes in the Small Intestine. PMID:35446142
Chemotaxis shapes the microscale organization of the ocean's microbiome. PMID:35444277
Coral holobiont cues prime Endozoicomonas for a symbiotic lifestyle. PMID:35444262
Synthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiome. PMID:35444261
Indoor green wall affects health-associated commensal skin microbiota and enhances immune regulation: a randomized trial among urban office workers. PMID:35444249
TRMT6/61A-dependent base methylation of tRNA-derived fragments regulates gene-silencing activity and the unfolded protein response in bladder cancer. PMID:35444240
Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams. PMID:35444202
Microbiome and related structural features of Earth's most archaic plant indicate early plant symbiosis attributes. PMID:35443766
Functional, transcriptional, and microbial shifts associated with healthy pulmonary aging in rhesus macaques. PMID:35443183
Clinical significance and intestinal microbiota composition in immunocompromised children with norovirus gastroenteritis. PMID:35443009
Feces DNA analyses track the rehabilitation of a free-ranging beluga whale. PMID:35440734
16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis. PMID:35440670
Diversity and distribution of sulfur metabolic genes in the human gut microbiome and their association with colorectal cancer. PMID:35440042
The gut microbiome influences host diet selection behavior. PMID:35439064
Development of Early-Life Gastrointestinal Microbiota in the Presence of Antibiotics Alters the Severity of Acute DSS-Induced Colitis in Mice. PMID:35438531
Metagenomic and Metatranscriptomic Insights into Population Diversity of Microcystis Blooms: Spatial and Temporal Dynamics of mcy Genotypes, Including a Partial Operon That Can Be Abundant and Expressed. PMID:35438519
Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality. PMID:35438176
The Chronic Wound Phageome: Phage Diversity and Associations with Wounds and Healing Outcomes. PMID:35435739
Microbial Community Dynamics Provide Evidence for Hypoxia during a Coral Reef Mortality Event. PMID:35435720
Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers. PMID:35435701
Phylogenetic diversity in sulphate-reducing bacterial communities from oxidised and reduced bottom sediments of the Barents Sea. PMID:35435634
Experimental colonization with Blastocystis ST4 is associated with protective immune responses and modulation of gut microbiome in a DSS-induced colitis mouse model. PMID:35435504
Identification of tissue-specific microbial profile of esophageal squamous cell carcinoma by full-length 16S rDNA sequencing. PMID:35435458
Rhizosphere microbiome dataset of Robusta coffee (Coffea canephora L.) grown in the Central Highlands, Vietnam, based on 16S rRNA metagenomics analysis. PMID:35434233
Data on metagenomic profiles of bacterial endophyte communities associated with Dicoma anomala. PMID:35434223
Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population. PMID:35434176
Oral and Stool Microbiome Coalescence and Its Association With Antibiotic Exposure in Acute Leukemia Patients. PMID:35433514
Average gut flora in healthy Japanese subjects stratified by age and body mass index. PMID:35433164
Divergence in gut bacterial community between females and males in the wolf spider Pardosa astrigera. PMID:35432934
Microbiome Variation Across Populations of Desert Halophyte Zygophyllum qatarensis. PMID:35432394
Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng. PMID:35432289
Association of Gut Microbiota With Metabolism in Rainbow Trout Under Acute Heat Stress. PMID:35432278
Biodiversity and Biogeography of Abundant and Rare Microbial Assemblages in the Western Subtropical Pacific Ocean. PMID:35432250
Genomic Evidence for the Recycling of Complex Organic Carbon by Novel Thermoplasmatota Clades in Deep-Sea Sediments. PMID:35430893
Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential. PMID:35430593
Microbial changes in stool, saliva, serum, and urine before and after anti-TNF-α therapy in patients with inflammatory bowel diseases. PMID:35428806
Loss of microbiota-derived protective metabolites after neutropenic fever. PMID:35428797
Seasonal and geographical differences in the ruminal microbial and chloroplast composition of sika deer (Cervus nippon) in Japan. PMID:35428768
Teasing apart the host-related, nutrient-related and temperature-related effects shaping the phenology and microbiome of the tropical seagrass Halophila stipulacea. PMID:35428367
Abundant and Rare Bacterial Taxa Structuring Differently in Sediment and Water in Thermokarst Lakes in the Yellow River Source Area, Qinghai-Tibet Plateau. PMID:35422785
Effect of 6-Methoxybenzoxazolinone on the Cecal Microbiota of Adult Male Brandt's Vole. PMID:35422782
Gut Microbiome and Metabolomics Profiles of Allergic and Non-Allergic Childhood Asthma. PMID:35418758
Diversity and structure of sparids external microbiota (Teleostei) and its link with monogenean ectoparasites. PMID:35418308
Enhancing Metabolic Efficiency through Optimizing Metabolizable Protein Profile in a Time Progressive Manner with Weaned Goats as a Model: Involvement of Gut Microbiota. PMID:35416718
Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties. PMID:35416691
Metagenomic evidence of a novel family of anammox bacteria in a subsea environment. PMID:35415863
Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima. PMID:35415278
Soil metabolomics and bacterial functional traits revealed the responses of rhizosphere soil bacterial community to long-term continuous cropping of Tibetan barley. PMID:35415021
Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding. PMID:35414043
Persistent Circulation of Enterohemorrhagic Escherichia coli (EHEC) O157:H7 in Cattle Farms: Characterization of Enterohemorrhagic Escherichia coli O157:H7 Strains and Fecal Microbial Communities of Bovine Shedders and Non-shedders. PMID:35411306
Gut microbiome responses to dietary intervention with hypocholesterolemic vegetable oils. PMID:35411007
The Microbial Mechanisms of a Novel Photosensitive Material (Treated Rape Pollen) in Anti-Biofilm Process under Marine Environment. PMID:35409199
Cross-Omics Analysis of Fenugreek Supplementation Reveals Beneficial Effects Are Caused by Gut Microbiome Changes Not Mammalian Host Physiology. PMID:35409014
Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization. PMID:35408978
Gut Mucosal Microbiome Is Perturbed in Rheumatoid Arthritis Mice and Partly Restored after TDAG8 Deficiency or Suppression by Salicylanilide Derivative. PMID:35408888
Daily Exposure to a Cranberry Polyphenol Oral Rinse Alters the Oral Microbiome but Not Taste Perception in PROP Taster Status Classified Individuals. PMID:35406108
Characterization of the Microbial Communities along the Gastrointestinal Tract in Crossbred Cattle. PMID:35405815
Relationships of the Microbial Communities with Rumen Epithelium Development of Nellore Cattle Finished in Feedlot Differing in Phenotypic Residual Feed Intake. PMID:35405810
Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples. PMID:35404108
Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf. PMID:35404072
Symbiont Community Composition in Rimicaris kairei Shrimps from Indian Ocean Vents with Notes on Mineralogy. PMID:35404070
The effect of Epichloë endophyte on phyllosphere microbes and leaf metabolites in Achnatherum inebrians. PMID:35402863
Antibiotic Exposure Aggravates Bacteroides-Linked Uremic Toxicity in the Gut-Kidney Axis. PMID:35401522
Microbial Community Changes in 26,500-Year-Old Thawing Permafrost. PMID:35401488
Mycorrhizosphere Bacteria, Rahnella sp. HPDA25, Promotes the Growth of Armillaria gallica and Its Parasitic Host Gastrodia elata. PMID:35401480
Surface Ammonia-Oxidizer Abundance During the Late Summer in the West Antarctic Coastal System. PMID:35401462
A Two-Time Point Analysis of Gut Microbiota in the General Population of Buenos Aires and Its Variation Due to Preventive and Compulsory Social Isolation During the COVID-19 Pandemic. PMID:35401432
Rumen Microbiome and Metabolome of High and Low Residual Feed Intake Angus Heifers. PMID:35400092
Protective Effects of Intestinal Gallic Acid in Neonatal Dairy Calves Against Extended-Spectrum β-lactamase Producing Enteroaggregative Escherichia coli Infection: Modulating Intestinal Homeostasis and Colitis. PMID:35399688
Classification of the Occurrence of Dyslipidemia Based on Gut Bacteria Related to Barley Intake. PMID:35399681
Er-Chen Decoction Alleviates High-Fat Diet-Induced Nonalcoholic Fatty Liver Disease in Rats through Remodeling Gut Microbiota and Regulating the Serum Metabolism. PMID:35399623
Colorectal microbiota after removal of colorectal cancer. PMID:35399186
Influence of Chlorella vulgaris on growth, digestibility and gut morphology and microbiota of weaned piglet. PMID:35397660
Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers. PMID:35396458
Altered gut microbiota and its association with inflammation in patients with chronic thromboembolic pulmonary hypertension: a single-center observational study in Japan. PMID:35395844
Longitudinal dynamics of the bovine udder microbiota. PMID:35395785
Soil bacterial assemblage responses to wildfire in low elevation southern California habitats. PMID:35395016
Cophylogeny and convergence shape holobiont evolution in sponge-microbe symbioses. PMID:35393600
Comparative transcriptome profiling of virulent and avirulent isolates of Neoparamoeba perurans. PMID:35393457
Resistant Potato Starch Alters the Cecal Microbiome and Gene Expression in Mice Fed a Western Diet Based on NHANES Data. PMID:35392294
Exome and Tissue-Associated Microbiota as Predictive Markers of Response to Neoadjuvant Treatment in Locally Advanced Rectal Cancer. PMID:35392220
The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network. PMID:35386977
Introduction of Probiotic-Based Sanitation in the Emergency Ward of a Children's Hospital During the COVID-19 Pandemic. PMID:35386291
The Microbiome Structure of a Rice-Crayfish Integrated Breeding Model and Its Association with Crayfish Growth and Water Quality. PMID:35384719
Responses of the Soil Bacterial Community, Resistome, and Mobilome to a Decade of Annual Exposure to Macrolide Antibiotics. PMID:35384705
Soil Origin and Plant Genotype Modulate Switchgrass Aboveground Productivity and Root Microbiome Assembly. PMID:35384699
Active Microbial Airborne Dispersal and Biomorphs as Confounding Factors for Life Detection in the Cell-Degrading Brines of the Polyextreme Dallol Geothermal Field. PMID:35384698
Dynamic Changes in Breast Milk Microbiome in the Early Postpartum Period of Kenyan Women Living with HIV Are Influenced by Antibiotics but Not Antiretrovirals. PMID:35384692
Obesity influences composition of salivary and fecal microbiota and impacts the interactions between bacterial taxa. PMID:35384379
Soil environment reshapes microbiota of laboratory-maintained Collembola during host development. PMID:35382887
The methane-driven interaction network in terrestrial methane hotspots. PMID:35382875
The relationship between dietary trophic level, parasites and the microbiome of Pacific walrus (Odobenus rosmarus divergens). PMID:35382593
Intercolony Comparisons of Gut Microbiome Composition From Lab Reared Eastern Subterranean Termites (Blattodea: Rhinotermitidae). PMID:35381082
An optimized approach for processing of frozen lung and lavage samples for microbiome studies. PMID:35381030
The human milk microbiome aligns with lactation stage and not birth mode. PMID:35379843
Effect of Antimicrobial Prophylaxis on Corynebacterium bovis Infection and the Skin Microbiome of Immunodeficient Mice. PMID:35379380
The gut bacterial microbiome of Nile tilapia (Oreochromis niloticus) from lakes across an altitudinal gradient. PMID:35379180
Genomic Insights into the Distribution of Peptidases and Proteolytic Capacity among Prevotella and Paraprevotella Species. PMID:35377228
Abiotic Treatment to Common Bean Plants Results in an Altered Endophytic Seed Microbiome. PMID:35377190
Positive Effects of Neutrophil Elastase Inhibitor (Sivelestat) on Gut Microbiome and Metabolite Profiles of Septic Rats. PMID:35372122
Changes in Gut Microbiota by the Lactobacillus casei Anchoring the K88 Fimbrial Protein Prevented Newborn Piglets From Clinical Diarrhea. PMID:35372106
Normal Light-Dark and Short-Light Cycles Regulate Intestinal Inflammation, Circulating Short-chain Fatty Acids and Gut Microbiota in Period2 Gene Knockout Mice. PMID:35371053
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. PMID:35369727
A Comprehensive Network Integrating Signature Microbes and Crucial Soil Properties During Early Biological Soil Crust Formation on Tropical Reef Islands. PMID:35369528
Microbial Co-occurrence Network and Fermentation Information of Natural Woody-Plant Silage Prepared With Grass and Crop By-Product in Southern Africa. PMID:35369476
Composition and Functional Diversity of Epiphytic Bacterial and Fungal Communities on Marine Macrophytes in an Intertidal Zone. PMID:35369473
Diversity and Effect of Increasing Temperature on the Activity of Methanotrophs in Sediments of Fildes Peninsula Freshwater Lakes, King George Island, Antarctica. PMID:35369426
Metataxonomic Analysis of Milk Samples From SARS-CoV-2-Positive and SARS-CoV-2-Negative Women. PMID:35369105
Faecal DNA metabarcoding reveals novel bacterial community patterns of critically endangered Southern River Terrapin, Batagur affinis. PMID:35368336
The phyllosphere microbiome shifts toward combating melanose pathogen. PMID:35366955
Successional Changes of Microbial Communities and Host-Microbiota Interactions Contribute to Dietary Adaptation in Allodiploid Hybrid Fish. PMID:35366074
Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice. PMID:35365681
Rhizosheath-root system changes exopolysaccharide content but stabilizes bacterial community across contrasting seasons in a desert environment. PMID:35365219
Next-generation sequencing: insights to advance clinical investigations of the microbiome. PMID:35362479
The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae. PMID:35359745
Bacterial Recruitment to Carnivorous Pitcher Plant Communities: Identifying Sources Influencing Plant Microbiome Composition and Function. PMID:35359741
Analysis of the Gut Bacterial Community of Wild Larvae of Anastrepha fraterculus sp. 1: Effect of Host Fruit, Environment, and Prominent Stable Associations of the Genera Wolbachia, Tatumella, and Enterobacter. PMID:35359740
Tree Species Diversity and Forest Edge Density Jointly Shape the Gut Microbiota Composition in Juvenile Great Tits (Parus major). PMID:35356520
Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics. PMID:35355087
Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome. PMID:35354908
Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence. PMID:35352997
Comparison of Cecal Microbiota and Performance Indices Between Lean-Type and Fatty-Type Pekin Ducks. PMID:35350611
Water Mass Controlled Vertical Stratification of Bacterial and Archaeal Communities in the Western Arctic Ocean During Summer Sea-Ice Melting. PMID:35347370
Bacterial communities in surface and basal ice of a glacier terminus in the headwaters of Yangtze River on the Qinghai-Tibet Plateau. PMID:35346386
Alterations of gut microbiota diversity, composition and metabonomics in testosterone-induced benign prostatic hyperplasia rats. PMID:35346378
16S metagenomics dataset of Zea mays and Triticum aestivum rhizosphere from Kallar Syedan Punjab, Pakistan. PMID:35345839
Global Distribution of mcr Gene Variants in 214K Metagenomic Samples. PMID:35343801
Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long-read metabarcoding. PMID:35342585
Environmental Factors Affecting the Community of Methane-oxidizing Bacteria. PMID:35342121
Metabolome and microbiome multi-omics integration from a murine lung inflammation model of bronchopulmonary dysplasia. PMID:35338351
MinION, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting. PMID:35337329
Spatial Metagenomic Analysis in Understanding the Microbial Diversity of Thar Desert. PMID:35336834
A Probabilistic Structural Equation Model to Evaluate Links between Gut Microbiota and Body Weights of Chicken Fed or Not Fed Insect Larvae. PMID:35336731
Wheat Straw Return Influences Soybean Root-Associated Bacterial and Fungal Microbiota in a Wheat-Soybean Rotation System. PMID:35336243
Microbial Community Structure and Ecological Networks during Simulation of Diatom Sinking. PMID:35336213
Unraveling the Tropaeolum majus L. (Nasturtium) Root-Associated Bacterial Community in Search of Potential Biofertilizers. PMID:35336212
Wintertime Simulations Induce Changes in the Structure, Diversity and Function of Antarctic Sea Ice-Associated Microbial Communities. PMID:35336197
Co-Occurrence of L. monocytogenes with Other Bacterial Genera and Bacterial Diversity on Cleaned Conveyor Surfaces in a Swine Slaughterhouse. PMID:35336188
Gut Microbial Characterization of Melon-Headed Whales (Peponocephala electra) Stranded in China. PMID:35336147
Alum Addition Triggers Hypoxia in an Engineered Pit Lake. PMID:35336086
Is the Intestinal Bacterial Community in the Australian Rabbitfish Siganus fuscescens Influenced by Seaweed Supplementation or Geography? PMID:35336073
Vitamin B Complex and Experimental Autoimmune Encephalomyelitis -Attenuation of the Clinical Signs and Gut Microbiota Dysbiosis. PMID:35334928
Relationship of Diet to Gut Microbiota and Inflammatory Biomarkers in People with HIV. PMID:35334878
Reduced Abundance of Nitrate-Reducing Bacteria in the Oral Microbiota of Women with Future Preeclampsia. PMID:35334796
The pathogens of secondary infection in septic patients share a similar genotype to those that predominate in the gut. PMID:35331299
Morel Production Associated with Soil Nitrogen-Fixing and Nitrifying Microorganisms. PMID:35330300
Prophylactic Addition of Glucose Suppresses Cyanobacterial Abundance in Lake Water. PMID:35330137
Integrative Insight into Relationships between Florivorous Thrips Haplothrips leucanthemi and H. niger (Insecta, Thysanoptera). PMID:35323577
The gut microbiome of exudivorous marmosets in the wild and captivity. PMID:35322053
Gut microbiome and plasma metabolome changes in rats after oral gavage of nanoparticles: sensitive indicators of possible adverse health effects. PMID:35321750
Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function. PMID:35320603
Genomic Comparisons of Two Armillaria Species with Different Ecological Behaviors and Their Associated Soil Microbial Communities. PMID:35312808
Diversity and distribution of sediment bacteria across an ecological and trophic gradient. PMID:35312685
The Proportion of Soil-Borne Fungal Pathogens Increases with Elevated Organic Carbon in Agricultural Soils. PMID:35311561
Increasing transparency and reproducibility in stroke-microbiota research: A toolbox for microbiota analysis. PMID:35310944
The Power of Microbiome Studies: Some Considerations on Which Alpha and Beta Metrics to Use and How to Report Results. PMID:35310396
Freeze-drying can replace cold-chains for transport and storage of fecal microbiome samples. PMID:35310158
Variation of the seed endophytic bacteria among plant populations and their plant growth-promoting activities in a wild mustard plant species, Capsella bursa-pastoris. PMID:35309752
Dietary Administration of L-Carnitine During the Fattening Period of Early Feed Restricted Lambs Modifies Ruminal Fermentation but Does Not Improve Feed Efficiency. PMID:35309073
Exogenous Microorganisms Promote Moss Biocrust Growth by Regulating the Microbial Metabolic Pathway in Artificial Laboratory Cultivation. PMID:35308403
Comparative Respiratory Tract Microbiome Between Carbapenem-Resistant Acinetobacter baumannii Colonization and Ventilator Associated Pneumonia. PMID:35308401
Antarctic Glacial Meltwater Impacts the Diversity of Fungal Parasites Associated With Benthic Diatoms in Shallow Coastal Zones. PMID:35308360
Classic Hoarding Cages Increase Gut Bacterial Abundance and Reduce the Individual Immune Response of Honey Bee (Apis mellifera) Workers. PMID:35303101
Structure and function of the soil microbiome underlying N2O emissions from global wetlands. PMID:35301304
Epilithic Microbial Community Functionality in Deep Oligotrophic Continental Bedrock. PMID:35300483
Alternative to ZnO to establish balanced intestinal microbiota for weaning piglets. PMID:35298549
Community Structure and Functional Annotations of the Skin Microbiome in Healthy and Diseased Catfish, Heteropneustes fossilis. PMID:35295300
Assessment of Long-Term Macrolide Exposure on the Oropharyngeal Microbiome and Macrolide Resistance in Healthy Adults and Consequences for Onward Transmission of Resistance. PMID:35293783
On the origin of TSAR: morphology, diversity and phylogeny of Telonemia. PMID:35291881
Robustness of Mammalian Gut Microbiota to Humanization in Captivity. PMID:35291481
Mucospheres produced by a mixotrophic protist impact ocean carbon cycling. PMID:35288549
Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial. PMID:35287713
Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field. PMID:35285907
Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine "Candidatus Manganitrophaceae" Species Implies Their Worldwide Reach in Manganese Chemolithoautotrophy. PMID:35285693
Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka. PMID:35285678
Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research. PMID:35285497
A Metagenomic Approach for Characterizing Antibiotic Resistance Genes in Specific Bacterial Populations: Demonstration with Escherichia coli in Cattle Manure. PMID:35285243
Geographical and Seasonal Analysis of the Honeybee Microbiome. PMID:35284961
Illuminating the bacterial microbiome of Australian ticks with 16S and Rickettsia-specific next-generation sequencing. PMID:35284883
Application of Psychrotolerant Antarctic Bacteria and Their Metabolites as Efficient Plant Growth Promoting Agents. PMID:35284420
Microbial Biofilms Along a Geochemical Gradient at the Shallow-Water Hydrothermal System of Vulcano Island, Mediterranean Sea. PMID:35283854
Host Plant Species Influences the Composition of Milkweed and Monarch Microbiomes. PMID:35283842
Salicylic Acid-Mediated Disturbance Increases Bacterial Diversity in the Phyllosphere but Is Overcome by a Dominant Core Community. PMID:35283825
Effects of E scherichia coli Nissle 1917 on the Porcine Gut Microbiota, Intestinal Epithelium and Immune System in Early Life. PMID:35283814
Alleviation of Hepatic Steatosis: Dithizone-Related Gut Microbiome Restoration During Paneth Cell Dysfunction. PMID:35283810
Loss of gut microbial diversity in the cultured, agastric fish, Mexican pike silverside (Chirostoma estor: Atherinopsidae). PMID:35282279
Metagenetic and Volatilomic Approaches to Elucidate the Effect of Lactiplantibacillus plantarum Starter Cultures on Sicilian Table Olives. PMID:35281313
Microbiome Resilience and Health Implications for People in Half-Year Travel. PMID:35281043
Altered Gut Microbiome and Fecal Immune Phenotype in Early Preterm Infants With Leaky Gut. PMID:35280991
Metagenomics analysis of the fecal microbiota in Ring-necked pheasants (Phasianus colchicus) and Green pheasants (Phasianus versicolor) using next generation sequencing. PMID:35280539
Co-infecting pathogens can contribute to inflammatory responses and severe symptoms in COVID-19. PMID:35280492
Characterization and Comparison of the Rumen Luminal and Epithelial Microbiome Profiles Using Metagenomic Sequencing Technique. PMID:35280141
A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens. PMID:35278017
Unique bacterial communities associated with components of an artificial aquarium ecosystem and their possible contributions to nutrient cycling in this microecosystem. PMID:35277761
DNA- and RNA-based bacterial communities and geochemical zonation under changing sediment porewater dynamics on the Aldabra Atoll. PMID:35277525
Additional Resistant Starch from One Potato Side Dish per Day Alters the Gut Microbiota but Not Fecal Short-Chain Fatty Acid Concentrations. PMID:35277080
Oral Administration of Water Extract from Euglena gracilis Alters the Intestinal Microbiota and Prevents Lung Carcinoma Growth in Mice. PMID:35277036
Dietary Intake Mediates Ethnic Differences in Gut Microbial Composition. PMID:35277019
Co-toxicity of Endotoxin and Indoxyl Sulfate, Gut-Derived Bacterial Metabolites, to Vascular Endothelial Cells in Coronary Arterial Disease Accompanied by Gut Dysbiosis. PMID:35276782
Gut Microbiome Alterations following Postnatal Iron Supplementation Depend on Iron Form and Persist into Adulthood. PMID:35276770
Reef Location and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus evelynae. PMID:35275230
Effects of Phragmites australis Shoot Remainder Silage on Growth Performance, Blood Biochemical Parameters, and Rumen Microbiota of Beef Cattle. PMID:35274018
Insights Into the Species-Specific Microbiota of Greenideinae (Hemiptera: Aphididae) With Evidence of Phylosymbiosis. PMID:35273583
Assessing the Impact of Diet on the Mucosa-Adhered Microbiome in Piglets Using Comparative Analysis of Rectal Swabs and Colon Content. PMID:35273582
A proposal for the reference intervals of the Italian microbiota "scaffold" in healthy adults. PMID:35273317
Selenium supplementation influences mice testicular selenoproteins driven by gut microbiota. PMID:35273298
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae. PMID:35272717
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. PMID:35272716
Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host-microbe coadaptation remain. PMID:35272695
Effect of Humin and Chemical Factors on CO2-Fixing Acetogenesis and Methanogenesis. PMID:35270239
Plant Genotype Shapes the Bacterial Microbiome of Fruits, Leaves, and Soil in Olive Plants. PMID:35270082
Transcriptome Profiling and Functional Validation of RING-Type E3 Ligases in Halophyte Sesuvium verrucosum under Salinity Stress. PMID:35269961
The Effects of Commonly Consumed Dietary Fibres on the Gut Microbiome and Its Fibre Fermentative Capacity in Adults with Inflammatory Bowel Disease in Remission. PMID:35268028
Gut Microbiota Modulation of Moderate Undernutrition in Infants through Gummy Lactobacillus plantarum Dad-13 Consumption: A Randomized Double-Blind Controlled Trial. PMID:35268024
The effects of the Green-Mediterranean diet on cardiometabolic health are linked to gut microbiome modifications: a randomized controlled trial. PMID:35264213
Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom. PMID:35264111
Variation in diet composition and its relation to gut microbiota in a passerine bird. PMID:35260644
Spectroscopic investigation of faeces with surface-enhanced Raman scattering: a case study with coeliac patients on gluten-free diet. PMID:35258650
Immunogenetic variation shapes the gut microbiome in a natural vertebrate population. PMID:35256003
The microbiome and resistome of apple fruits alter in the post-harvest period. PMID:35256002
Distinct bronchial microbiome precedes clinical diagnosis of lung cancer. PMID:35255902
RNA-Seq reveals miRNA role in thermogenic regulation in brown adipose tissues of goats. PMID:35255830
Gut microbiome modifications over time when removing in-feed antibiotics from the prophylaxis of post-weaning diarrhea in piglets. PMID:35255081
Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization. PMID:35254122
Effects of Long-Term Enclosed Environment on Human Health Based on the Analysis of Salivary Microbiota and Cytokines. PMID:35254118
Host Traits and Phylogeny Contribute to Shaping Coral-Bacterial Symbioses. PMID:35253476
Investigation on the characteristics of gut microbiota in critically endangered blue-crowned laughingthrush (Garrulax courtoisi). PMID:35253087
Antibiotics reduce bacterial load in Exaiptasia diaphana, but biofilms hinder its development as a gnotobiotic coral model. PMID:35252752
Metabarcoding data of prokaryotes and eukaryotes inhabiting the phosphogypsum stockpiles on the salt marshes of Huelva (SW Spain). PMID:35252502
2'-Fucosyllactose Ameliorates Inflammatory Bowel Disease by Modulating Gut Microbiota and Promoting MUC2 Expression. PMID:35252301
Offering Fiber-Enriched Foods Increases Fiber Intake in Adults With or Without Cardiometabolic Risk: A Randomized Controlled Trial. PMID:35252300
The Microbiome of Meibomian Gland Secretions from Patients with Internal Hordeolum Treated with Hypochlorous Acid Eyelid Wipes. PMID:35251376
Changes of Intestinal Microflora in Colorectal Cancer Patients after Surgical Resection and Chemotherapy. PMID:35251295
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease. PMID:35251123
Multi-Omics Analysis After Vaginal Administration of Bacteroides fragilis in Chickens. PMID:35250960
Bacteria Associated With Phaeocystis globosa and Their Influence on Colony Formation. PMID:35250943
Thermophilic Composting of Human Feces: Development of Bacterial Community Composition and Antimicrobial Resistance Gene Pool. PMID:35250940
Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly. PMID:35250925
Mammary tumors alter the fecal bacteriome and permit enteric bacterial translocation. PMID:35248004
Impact of wheat aleurone on biomarkers of cardiovascular disease, gut microbiota and metabolites in adults with high body mass index: a double-blind, placebo-controlled, randomized clinical trial. PMID:35247098
Rap1 prevents colitogenic Th17 cell expansion and facilitates Treg cell differentiation and distal TCR signaling. PMID:35246619
The Effect of Topical Anesthetics on 16S Ribosomal Ribonucleic Acid Amplicon Sequencing Results in Ocular Surface Microbiome Research. PMID:35238917
Fungal and Bacterial Diversity in the Tuber magnatum Ecosystem and Microbiome. PMID:35237850
Skin Microbiota Was Altered in Crocodile Lizards (Shinisaurus crocodilurus) With Skin Ulcer. PMID:35237680
Biofilms in Water Hoses of a Meat Processing Environment Harbor Complex Microbial Communities. PMID:35237250
The Phylosymbiosis Pattern Between the Fig Wasps of the Same Genus and Their Associated Microbiota. PMID:35237241
Soil Nitrogen Treatment Alters Microbiome Networks Across Farm Niches. PMID:35237240
Genetically related genotypes of cowpea present similar bacterial community in the rhizosphere. PMID:35236879
Characterization of the First Cultured Representative of "Candidatus Thermofonsia" Clade 2 within Chloroflexi Reveals Its Phototrophic Lifestyle. PMID:35229635
Microbial biogeography of the wombat gastrointestinal tract. PMID:35228910
The core root microbiome of Spartina alterniflora is predominated by sulfur-oxidizing and sulfate-reducing bacteria in Georgia salt marshes, USA. PMID:35227326
Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content. PMID:35224663
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs. PMID:35223533
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish. PMID:35223211
Diversity and Ecological Guild Analysis of the Oil Palm Fungal Microbiome Across Root, Rhizosphere, and Soil Compartments. PMID:35222328
Local Habitat Filtering Shapes Microbial Community Structure in Four Closely Spaced Lakes in the High Arctic. PMID:35222324
Differential Response of Acidobacteria to Water Content, Soil Type, and Land Use During an Extended Drought in African Savannah Soils. PMID:35222321
Correlation Between Fe/S/As Speciation Transformation and Depth Distribution of Acidithiobacillus ferrooxidans and Acidiphilium acidophilum in Simulated Acidic Water Column. PMID:35222314
Comparison of Rumen Fermentation Parameters and Microbiota of Yaks From Different Altitude Regions in Tibet, China. PMID:35222306
Freshwater Microbial Eukaryotic Core Communities, Open-Water and Under-Ice Specialists in Southern Victoria Island Lakes (Ekaluktutiak, NU, Canada). PMID:35222298
Dynamic Responses of Endosymbiotic Microbial Communities Within Microcystis Colonies in North American Lakes to Altered Nitrogen, Phosphorus, and Temperature Levels. PMID:35222297
Catabolic protein degradation in marine sediments confined to distinct archaea. PMID:35220398
Urbanization comprehensively impairs biological rhythms in coral holobionts. PMID:35218086
The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. PMID:35217776
Different gut microbial communities correlate with efficacy of albendazole-ivermectin against soil-transmitted helminthiases. PMID:35217670
Effects of Zn-Enriched Bifidobacterium longum on the Growth and Reproduction of Rats. PMID:35215433
Fusobacterium nucleatum promotes liver metastasis in colorectal cancer by regulating the hepatic immune niche and altering gut microbiota. PMID:35212644
Living in a bottle: Bacteria from sediment-associated Mediterranean waste and potential growth on polyethylene terephthalate. PMID:35212483
Community Assembly and Co-Occurrence Patterns of Microeukaryotes in Thermokarst Lakes of the Yellow River Source Area. PMID:35208934
Combination of High-Pressure Treatment at 500 MPa and Biopreservation with a Lactococcus lactis Strain for Lowering the Bacterial Growth during Storage of Diced Cooked Ham with Reduced Nitrite Salt. PMID:35208910
Pea-Wheat Rotation Affects Soil Microbiota Diversity, Community Structure, and Soilborne Pathogens. PMID:35208825
Dynamics of Microbial Communities in Phototrophic Polyhydroxyalkanoate Accumulating Cultures. PMID:35208806
Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota. PMID:35208788
Microorganisms in Superficial Deposits on the Stone Monuments in Saint Petersburg. PMID:35208771
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types. PMID:35208748
Rhizosphere Diazotrophs and Other Bacteria Associated with Native and Encroaching Legumes in the Succulent Karoo Biome in South Africa. PMID:35208671
Water Column Microbial Communities Vary along Salinity Gradients in the Florida Coastal Everglades Wetlands. PMID:35208670
The Influence of Kerosene on Microbiomes of Diverse Soils. PMID:35207510
The Algal Polysaccharide Ulvan and Carotenoid Astaxanthin Both Positively Modulate Gut Microbiota in Mice. PMID:35206042
The Effects of Enteral Nutrition on the Intestinal Environment in Patients in a Persistent Vegetative State. PMID:35206025
Characterization of Microbiological Quality of Whole and Gutted Baltic Herring. PMID:35205969
Salinity Gradient Controls Microbial Community Structure and Assembly in Coastal Solar Salterns. PMID:35205428
Unraveling Gut Microbiota Signatures Associated with PPARD and PARGC1A Genetic Polymorphisms in a Healthy Population. PMID:35205333
Microbiological Characteristics of Some Stations of Moscow Subway. PMID:35205037
Could Dietary Supplementation with Different Sources of N-3 Polyunsaturated Fatty Acids Modify the Rabbit Gut Microbiota? PMID:35203829
Obesity Reshapes the Microbial Population Structure along the Gut-Liver-Lung Axis in Mice. PMID:35203702
Tipping the Balance: Vitamin D Inadequacy in Children Impacts the Major Gut Bacterial Phyla. PMID:35203487
Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold. PMID:35202411
Isolation of DiNP-Degrading Microbes from the Mouse Colon and the Influence DiNP Exposure Has on the Microbiota, Intestinal Integrity, and Immune Status of the Colon. PMID:35202261
Malignant T Cell Activation by a Bacillus Species Isolated from Cutaneous T-Cell Lymphoma Lesions. PMID:35199089
Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert. PMID:35197940
Roots of the xerophyte Panicum turgidum host a cohort of ionizing-radiation-resistant biotechnologically-valuable bacteria. PMID:35197792
The lung microbiome regulates brain autoimmunity. PMID:35197636
Host microbiome responses to the Snake Fungal Disease pathogen (Ophidiomyces ophidiicola) are driven by changes in microbial richness. PMID:35197501
Gut microbiota and plasma cytokine levels in patients with attention-deficit/hyperactivity disorder. PMID:35197458
Altered gut microbiota composition with antibiotic treatment impairs functional recovery after traumatic peripheral nerve crush injury in mice: effects of probiotics with butyrate producing bacteria. PMID:35197129
Mesopelagic microbial community dynamics in response to increasing oil and Corexit 9500 concentrations. PMID:35196352
Long-term high-fructose high-fat diet feeding elicits insulin resistance, exacerbates dyslipidemia and induces gut microbiota dysbiosis in WHHL rabbits. PMID:35196347
Temporal and Spatial Variation of the Skin-Associated Bacteria from Healthy Participants and Atopic Dermatitis Patients. PMID:35196118
Microbial communities of ascocarps and soils in a natural habitat of Tuber indicum. PMID:35194691
High-throughput identification and quantification of single bacterial cells in the microbiota. PMID:35194029
Lasting shift in the gut microbiota in patients with acute myeloid leukemia. PMID:35192686
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes? PMID:35192222
Distinct gut microbiota profiles of Asian honey bee (Apis cerana) foragers. PMID:35192066
Metabolic Diversity and Aero-Tolerance in Anammox Bacteria from Geochemically Distinct Aquifers. PMID:35191775
Intratumoral Microbiome of Human Primary Liver Cancer. PMID:35191218
Differences in the composition and predicted functions of the intestinal microbiome of obese and normal weight adult dogs. PMID:35190784
Analysis of fecal bile acids and metabolites by high resolution mass spectrometry in farm animals and correlation with microbiota. PMID:35190565
The potential of fecal microbiota and amino acids to detect and monitor patients with adenoma. PMID:35188868
Pro-mutagenic effects of the gut microbiota in a Lynch syndrome mouse model. PMID:35188867
Rapid and accurate identification of ribosomal RNA sequences via deep learning. PMID:35188571
Development of the gut microbiota in healthy children in the first ten years of life: associations with internalizing and externalizing behavior. PMID:35188073
Comparative Analysis of Selective Bacterial Colonization by Polyethylene and Polyethylene Terephthalate Microplastics. PMID:35185853
Impacts of Continuous Cropping on Fungal Communities in the Rhizosphere Soil of Tibetan Barley. PMID:35185842
The Evolution of Ecological Diversity in Acidobacteria. PMID:35185839
Determining the Composition of Resident and Transient Members of the Oyster Microbiome. PMID:35185836
Comparative Genome Analysis of Three Komagataeibacter Strains Used for Practical Production of Nata-de-Coco. PMID:35185823
Analysis of Biosynthetic Gene Clusters, Secretory, and Antimicrobial Peptides Reveals Environmental Suitability of Exiguobacterium profundum PHM11. PMID:35185816
High-Fiber Diet or Combined With Acarbose Alleviates Heterogeneous Phenotypes of Polycystic Ovary Syndrome by Regulating Gut Microbiota. PMID:35185786
Psychological stress disrupts intestinal epithelial cell function and mucosal integrity through microbe and host-directed processes. PMID:35184677
Response of Milk Performance, Rumen and Hindgut Microbiome to Dietary Supplementation with Aspergillus oryzae Fermentation Extracts in Dairy Cows. PMID:35184209
Comparison of genetically modified insect-resistant maize and non-transgenic maize revealed changes in soil metabolomes but not in rhizosphere bacterial community. PMID:35180835
Dietary supplementation with fiber, "biotics," and spray-dried plasma affects apparent total tract macronutrient digestibility and the fecal characteristics, fecal microbiota, and immune function of adult dogs. PMID:35180312
The shifts in the structure of the prokaryotic community of mountain-grassland soil under the influence of artificial larch plantations. PMID:35180237
Impacts of continuous and rotational cropping practices on soil chemical properties and microbial communities during peanut cultivation. PMID:35177784
Microbial epibiotic community of the deep-sea galatheid squat lobster Munidopsis alvisca. PMID:35177734
Isolation of rhizosheath and analysis of microbial community structure around roots of Stipa grandis. PMID:35177730
Urine and vaginal microbiota compositions of postmenopausal and premenopausal women differ regardless of recurrent urinary tract infection and renal transplant status. PMID:35177690
Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. PMID:35176118
Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface. PMID:35173296
Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial. PMID:35173154
Vaginal microbiome of women with adenomyosis: A case-control study. PMID:35171931
Analysis of Ribosome Profiling Data. PMID:35171478
Anti-obesity effects of Chenpi: an artificial gastrointestinal system study. PMID:35170866
Effect of water management on microbial diversity and composition in an Italian rice field system. PMID:35170720
Bacterial diversity in different outdoor pilot plant photobioreactor types during production of the microalga Nannochloropsis sp. CCAP211/78. PMID:35166894
Microbial Functional Diversity Correlates with Species Diversity along a Temperature Gradient. PMID:35166562
Diverse methylotrophic methanogenic archaea cause high methane emissions from seagrass meadows. PMID:35165204
Determination of the Optimal Bacterial DNA Extraction Method to Explore the Urinary Microbiota. PMID:35163261
Effects of Periodontal Treatment in Patients with Periodontitis and Kidney Failure: A Pilot Study. PMID:35162556
Dynamics of Microbial Communities during the Removal of Copper and Zinc in a Sulfate-Reducing Bioreactor with a Limestone Pre-Column System. PMID:35162506
Impact of Soil Inoculation with Bacillus amyloliquefaciens FZB42 on the Phytoaccumulation of Germanium, Rare Earth Elements, and Potentially Toxic Elements. PMID:35161323
Phosphate enrichment induces increased dominance of the parasite Aquarickettsia in the coral Acropora cervicornis. PMID:35157069
Gastrointestinal Tract and Dietary Fiber Driven Alterations of Gut Microbiota and Metabolites in Durco × Bamei Crossbred Pigs. PMID:35155525
Human Gut Microbes Associated with Systolic Blood Pressure. PMID:35154822
Perspective: Simple State Communities to Study Microbial Interactions: Examples and Future Directions. PMID:35154052
Aquatic Macrophytes Are Associated With Variation in Biogeochemistry and Bacterial Assemblages of Mountain Lakes. PMID:35154025
Human Beta Defensin 2 Ameliorated Alcohol-Associated Liver Disease in Mice. PMID:35153819
Gut Microbiome Composition Linked to Inflammatory Factors and Cognitive Functions in First-Episode, Drug-Naive Major Depressive Disorder Patients. PMID:35153660
Distinct microbiota composition and fermentation products indicate functional compartmentalization in the hindgut of a marine herbivorous fish. PMID:35152505
Aged related human skin microbiome and mycobiome in Korean women. PMID:35149745
Comparative analysis of microbial communities from different full-scale haloalkaline biodesulfurization systems. PMID:35147744
Intratumor Microbiome Analysis Identifies Positive Association Between Megasphaera and Survival of Chinese Patients With Pancreatic Ductal Adenocarcinomas. PMID:35145519
Interactions Between Marine Group II Archaea and Phytoplankton Revealed by Population Correlations in the Northern Coast of South China Sea. PMID:35145493
Diversity and Distribution of Anaerobic Ammonium Oxidation Bacteria in Hot Springs of Conghua, China. PMID:35145488
The mosquito microbiome includes habitat-specific but rare symbionts. PMID:35140881
Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume. PMID:35140689
Drivers of gut microbiome variation within and between groups of a wild Malagasy primate. PMID:35139921
Sodium molybdate does not inhibit sulfate-reducing bacteria but increases shell growth in the Pacific oyster Magallana gigas. PMID:35139090
Axillary Microbiota Is Associated with Cognitive Impairment in Parkinson's Disease Patients. PMID:35138147
Association of the Gut Microbiota With Cognitive Function in Midlife. PMID:35133436
Sources of protein diet differentially stimulate the gut and water microbiota under freshwater crayfish, marron (Cherax cainii, Austin 2002) culture. PMID:35130581
Compensatory intestinal antibody response against pro-inflammatory microbiota after bariatric surgery. PMID:35130127
First report of gut bacterial dataset of a tribal Bhutia family from West Bengal, India. PMID:35128010
Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil. PMID:35128002
Effectiveness of Multistrain Probiotic Formulation on Common Infectious Disease Symptoms and Gut Microbiota Modulation in Flu-Vaccinated Healthy Elderly Subjects. PMID:35127941
Fecal microbiota transplantation does not alter bacterial translocation and visceral adipose tissue inflammation in individuals with obesity. PMID:35127122
Soil Microbial Community Response to Nitrogen Application on a Swamp Meadow in the Arid Region of Central Asia. PMID:35126333
Lactic Acid Bacteria Are Prevalent in the Infrabuccal Pockets and Crops of Ants That Prefer Aphid Honeydew. PMID:35126329
Characterization of the Microbiota Associated With 12-Week-Old Bovine Fetuses Exposed to Divergent in utero Nutrition. PMID:35126326
Fish Skin Microbiomes Are Highly Variable Among Individuals and Populations but Not Within Individuals. PMID:35126324
Integrated Analysis of the Cecal Microbiome and Plasma Metabolomics to Explore NaoMaiTong and Its Potential Role in Changing the Intestinal Flora and Their Metabolites in Ischemic Stroke. PMID:35126115
Biological manganese-dependent sulfide oxidation impacts elemental gradients in redox-stratified systems: indications from the Black Sea water column. PMID:35124702
Characteristics of the sputum microbiome in COPD exacerbations and correlations between clinical indices. PMID:35123490
Influence of 16S rRNA reference databases in amplicon-based environmental microbiome research. PMID:35122569
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. PMID:35119936
Factors to be considered in designing frameworks for automated bioinformatics pipelines-a perspective based on application setting. PMID:35117338
Effects of Herbal Tea Residue on Growth Performance, Meat Quality, Muscle Metabolome, and Rumen Microbiota Characteristics in Finishing Steers. PMID:35116016
Fecal microbiota transplantation ameliorates atherosclerosis in mice with C1q/TNF-related protein 9 genetic deficiency. PMID:35115674
Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population. PMID:35115596
The universally conserved nucleotides of the small subunit ribosomal RNAs. PMID:35115361
Spatio-temporal variation of bacterioplankton community structure in the Pearl River: impacts of artificial fishery habitat and physicochemical factors. PMID:35114951
Modern Approaches for Transcriptome Analyses in Plants. PMID:35113394
Bacterial Indicators Are Ubiquitous Members of Pelagic Microbiome in Anthropogenically Impacted Coastal Ecosystem. PMID:35111137
Analysis of colonic mucosa-associated microbiota using endoscopically collected lavage. PMID:35110685
The Effect of Thermal Stress on the Physiology and Bacterial Communities of Two Key Mediterranean Gorgonians. PMID:35108095
Determinants and Interactions of Oral Bacterial and Fungal Microbiota in Healthy Chinese Adults. PMID:35107355
Soil Microbial Communities Altered by Titanium Ions in Different Agroecosystems of Pitaya and Grape. PMID:35107347
OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs. PMID:35107341
Simultaneous Single-Cell Genome and Transcriptome Sequencing of Termite Hindgut Protists Reveals Metabolic and Evolutionary Traits of Their Endosymbionts. PMID:35107338
Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies. PMID:35106579
Mechanisms of immune activation and regulation: lessons from melanoma. PMID:35105962
Top-down and bottom-up cohesiveness in microbial community coalescence. PMID:35105804
Chronic Environmental Perturbation Influences Microbial Community Assembly Patterns. PMID:35103467
Volatile and Dissolved Organic Carbon Sources Have Distinct Effects on Microbial Activity, Nitrogen Content, and Bacterial Communities in Soil. PMID:35102425
Associations of neurotransmitters and the gut microbiome with emotional distress in mixed type of irritable bowel syndrome. PMID:35102266
Weaning differentially affects the maturation of piglet peripheral blood and jejunal Peyer's patches. PMID:35102264
How microbiomes can help inform conservation: landscape characterisation of gut microbiota helps shed light on additional population structure in a specialist folivore. PMID:35101152
The essential differences in microbial and chemical components of musk of different qualities secreted by captive male forest musk deer (Moschus berezovskii). PMID:35100485
Chemical composition of selected insect meals and their effect on apparent total tract digestibility, fecal metabolites, and microbiota of adult cats fed insect-based retorted diets. PMID:35100391
The FUT2 Variant c.461G>A (p.Trp154*) Is Associated With Differentially Expressed Genes and Nasopharyngeal Microbiota Shifts in Patients With Otitis Media. PMID:35096646
Domestication Impacts the Wheat-Associated Microbiota and the Rhizosphere Colonization by Seed- and Soil-Originated Microbiomes, Across Different Fields. PMID:35095978
Gallic Acid Alleviates Gut Dysfunction and Boosts Immune and Antioxidant Activities in Puppies Under Environmental Stress Based on Microbiome-Metabolomics Analysis. PMID:35095912
Mussels and Local Conditions Interact to Influence Microbial Communities in Mussel Beds. PMID:35095802
Construction of Aerobic/Anaerobic-Substrate-Induced Gene Expression Procedure for Exploration of Metagenomes From Subseafloor Sediments. PMID:35095779
Seasonal Diversity of Microeukaryotes in the Han River, Korea Through 18S rRNA Gene Metabarcoding. PMID:35095269
Dynamics of Bacterial Communities on Eggshells and on Nest Materials During Incubation in the Oriental Tit (Parus minor). PMID:35094098
Mapping the Green-Lipped Mussel (Perna canaliculus) Microbiome: A Multi-Tissue Analysis of Bacterial and Fungal Diversity. PMID:35091849
GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring. PMID:35087491
The Effect of Salmon Food-Derived DOM and Glacial Melting on Activity and Diversity of Free-Living Bacterioplankton in Chilean Patagonian Fjords. PMID:35087485
A dysbiotic microbiome promotes head and neck squamous cell carcinoma. PMID:35087236
Transcript profiles of wild and domesticated sorghum under water-stressed conditions and the differential impact on dhurrin metabolism. PMID:35084593
Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. PMID:35082431
Synergistic Effects of 3-Nitrooxypropanol with Fumarate in the Regulation of Propionate Formation and Methanogenesis in Dairy Cows In Vitro. PMID:35080908
Dispersed Crude Oil Induces Dysbiosis in the Red Snapper Lutjanus campechanus External Microbiota. PMID:35080447
Skin microbiome profile of healthy Cameroonians and Japanese. PMID:35079063
Gut microbiota of the threatened takahē: biogeographic patterns and conservation implications. PMID:35078539
Closely related Salmonella Derby strains triggered distinct gut microbiota alteration. PMID:35078518
A simple guide to de novo transcriptome assembly and annotation. PMID:35076693
LncRNAs Are Differentially Expressed between Wildtype and Cell Line Strains of African Trypanosomes. PMID:35076577
Multi-omics Analysis Revealed Coordinated Responses of Rumen Microbiome and Epithelium to High-Grain-Induced Subacute Rumen Acidosis in Lactating Dairy Cows. PMID:35076273
In-Depth Analysis of Bacillus anthracis 16S rRNA Genes and Transcripts Reveals Intra- and Intergenomic Diversity and Facilitates Anthrax Detection. PMID:35076271
Parkinson's Disease Medication Alters Small Intestinal Motility and Microbiota Composition in Healthy Rats. PMID:35076270
Limited Evidence for Microbial Transmission in the Phylosymbiosis between Hawaiian Spiders and Their Microbiota. PMID:35076268
Group IIA secreted phospholipase A2 controls skin carcinogenesis and psoriasis by shaping the gut microbiota. PMID:35076024
Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity. PMID:35073752
The Depth-Depended Fungal Diversity and Non-depth-Depended Aroma Profiles of Pit Mud for Strong-Flavor Baijiu. PMID:35069486
Dietary Correlates of Oral and Gut Microbiota in the Water Monitor Lizard, Varanus salvator (Laurenti, 1768). PMID:35069477
Interaction of Gut Microbiota and Brain Function in Patients With Chronic Insomnia: A Regional Homogeneity Study. PMID:35069107
Quantifying the immediate response of the soil microbial community to different grazing intensities on irrigated pastures. PMID:35068628
High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes. PMID:35068060
Diversity of cultivable bacteria from deep-sea sediments of the Colombian Caribbean and their potential in bioremediation. PMID:35066712
Dysbiotic microbes and how to find them: a review of microbiome profiling in prostate cancer. PMID:35065652
Salmonella phage CKT1 significantly relieves the body weight loss of chicks by normalizing the abnormal intestinal microbiome caused by hypervirulent Salmonella Pullorum. PMID:35063807
Genomic insights into versatile lifestyle of three new bacterial candidate phyla. PMID:35060074
DNA Metabarcoding from Microbial Communities Recovered from Stream and Its Potential for Bioremediation Processes. PMID:35059862
Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. PMID:35058457
The Effects of One Anastomosis Gastric Bypass Surgery on the Gastrointestinal Tract. PMID:35057486
Yogurt Enriched with Inulin Ameliorated Reproductive Functions and Regulated Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice. PMID:35057459
Intestinal Taxa Abundance and Diversity in Inflammatory Bowel Disease Patients: An Analysis including Covariates and Confounders. PMID:35057440
Effects of Turning Frequency on Ammonia Emission during the Composting of Chicken Manure and Soybean Straw. PMID:35056787
Effects of Allelochemicals, Soil Enzyme Activities, and Environmental Factors on Rhizosphere Soil Microbial Community of Stellera chamaejasme L. along a Growth-Coverage Gradient. PMID:35056607
Nematode-Microbe Complexes in Soils Replanted with Apple. PMID:35056606
From Surface to Subsurface: Diversity, Composition, and Abundance of Sessile and Endolithic Bacterial, Archaeal, and Eukaryotic Communities in Sand, Clay and Rock Substrates in the Laurentians (Quebec, Canada). PMID:35056578
Biomineralization by Extremely Halophilic and Metal-Tolerant Community Members from a Sulfate-Dominated Metal-Rich Environment. PMID:35056528
High-Throughput Sequencing Analysis of the Composition and Diversity of the Bacterial Community in Cinnamomum camphora Soil. PMID:35056523
Bacterial Succession during Vermicomposting of Silver Wattle (Acacia dealbata Link). PMID:35056514
Human Colonic Microbiota and Short-Term Postoperative Outcomes in Colorectal Cancer Patients: A Pilot Study. PMID:35056490
Rokubacteria in Northern Peatlands: Habitat Preferences and Diversity Patterns. PMID:35056460
Odontogenic Cervicofacial Necrotizing Fasciitis: Microbiological Characterization and Management of Four Clinical Cases. PMID:35056026
A Comprehensive Evaluation of Enterobacteriaceae Primer Sets for Analysis of Host-Associated Microbiota. PMID:35055964
Inulin Improves Diet-Induced Hepatic Steatosis and Increases Intestinal Akkermansia Genus Level. PMID:35055177
Amelioration of Alzheimer's Disease by Gut-Pancreas-Liver-Brain Interaction in an App Knock-In Mouse Model. PMID:35054427
An Interplay between Viruses and Bacteria Associated with the White Sea Sponges Revealed by Metagenomics. PMID:35054418
Characterization of the Gastrointestinal and Reproductive Tract Microbiota in Fertile and Infertile Pakistani Couples. PMID:35053038
Fecal Microbiota Dynamics Reveal the Feasibility of Early Weaning of Yak Calves under Conventional Grazing System. PMID:35053029
Djulis Hull Improves Insulin Resistance and Modulates the Gut Microbiota in High-Fat Diet (HFD)-Induced Hyperglycaemia. PMID:35052549
Diverse DNA modification in marine prokaryotic and viral communities. PMID:35051998
Genetic manipulation of gut microbes enables single-gene interrogation in a complex microbiome. PMID:35051369
Comparison of ready-to-eat "organic" antimicrobials, sodium bisulfate, and sodium lactate, on Listeria monocytogenes and the indigenous microbiome of organic uncured beef frankfurters stored under refrigeration for three weeks. PMID:35051217
Mesophilic and Thermophilic Anaerobic Digestion of Wheat Straw in a CSTR System with 'Synthetic Manure': Impact of Nickel and Tungsten on Methane Yields, Cell Count, and Microbiome. PMID:35049722
Draft Genome Sequence of Isolate POC01, a Novel Anaerobic Member of the Oscillospiraceae Family, Isolated from Human Feces. PMID:35049352
Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential. PMID:35049133
Peppermint oil effects on the gut microbiome in children with functional abdominal pain. PMID:35048535
Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm. PMID:35048077
Shared and Specific Lung Microbiota with Metabolic Profiles in Bronchoalveolar Lavage Fluid Between Infectious and Inflammatory Respiratory Diseases. PMID:35046693
Analysis of soil bacterial communities and physicochemical properties associated with Fusarium wilt disease of banana in Malaysia. PMID:35046475
Template switching in DNA replication can create and maintain RNA hairpins. PMID:35046021
Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge. PMID:35045876
Glucose addition promotes C fixation and bacteria diversity in C-poor soils, improves root morphology, and enhances key N metabolism in apple roots. PMID:35045112
Exploring the Anal Microbiome in HIV Positive and High-Risk HIV Negative Women. PMID:35044233
Diversity and Distribution of Microbial Communities Associated with Reef Corals of the Malay Peninsula. PMID:35043221
Putative host-derived insertions in the genomes of circulating SARS-CoV-2 variants. PMID:35043112
Reef environments shape microbial partners in a highly connected coral population. PMID:35042418
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils. PMID:35040702
Microbiome differential abundance methods produce different results across 38 datasets. PMID:35039521
Intestinal Claudin-7 deficiency impacts the intestinal microbiota in mice with colitis. PMID:35039003
Diversity of bacteriocins in the microbiome of the Tucuruí Hydroelectric Power Plant water reservoir and three-dimensional structure prediction of a zoocin. PMID:35037933
Associations of Childhood and Perinatal Blood Metals with Children's Gut Microbiomes in a Canadian Gestation Cohort. PMID:35037767
The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes. PMID:35037113
Sleep and the gut microbiota in preschool-aged children. PMID:35037059
Soil microbiome dataset from Yok Don national park in the Central Highlands region of Vietnam. PMID:35036494
Differential expression profiles of microRNAs in musk gland of unmated and mated forest musk deer (Moschus berezovskii). PMID:35036174
Top-Down Enrichment Strategy to Co-cultivate Lactic Acid and Lignocellulolytic Bacteria From the Megathyrsus maximus Phyllosphere. PMID:35035382
Quantitative Metaproteomics and Activity-based Protein Profiling of Patient Fecal Microbiome Identifies Host and Microbial Serine-type Endopeptidase Activity Associated With Ulcerative Colitis. PMID:35033677
Modulation of Atlantic salmon (Salmo salar) gut microbiota composition and predicted metabolic capacity by feeding diets with processed black soldier fly (Hermetia illucens) larvae meals and fractions. PMID:35033208
A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms. PMID:35030221
Longitudinal variability in the urinary microbiota of healthy premenopausal women and the relation to neighboring microbial communities: A pilot study. PMID:35030190
Oral microbiota in xerostomia patients - A preliminary study. PMID:35028054
Unique mobile elements and scalable gene flow at the prokaryote-eukaryote boundary revealed by circularized Asgard archaea genomes. PMID:35027677
Specific gut bacterial responses to natural diets of tropical birds. PMID:35027664
Use of metagenomic microbial source tracking to investigate the source of a foodborne outbreak of cryptosporidiosis. PMID:35024477
Responsive changes of rumen microbiome and metabolome in dairy cows with different susceptibility to subacute ruminal acidosis. PMID:35024470
Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome. PMID:35022514
Torula yeast in the diet of Atlantic salmon Salmo salar and the impact on growth performance and gut microbiome. PMID:35022439
Trophic and symbiotic links between obligate-glacier water bears (Tardigrada) and cryoconite microorganisms. PMID:35020747
Metagenomic and Metatranscriptomic Responses of Chemical Dispersant Application during a Marine Dilbit Spill. PMID:35020455
The Impact of Mouthwash on the Oropharyngeal Microbiota of Men Who Have Sex with Men: a Substudy of the OMEGA Trial. PMID:35019769
Meconium Microbiome of Very Preterm Infants across Germany. PMID:35019670
Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities. PMID:35017653
PET microplastics affect human gut microbiota communities during simulated gastrointestinal digestion, first evidence of plausible polymer biodegradation during human digestion. PMID:35017590
Gut microbiome development in early childhood is affected by day care attendance. PMID:35017536
Age-Associated Gut Dysbiosis, Marked by Loss of Butyrogenic Potential, Correlates With Altered Plasma Tryptophan Metabolites in Older People Living With HIV. PMID:35015746
Whole-Genome Duplication and Host Genotype Affect Rhizosphere Microbial Communities. PMID:35014873
Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes. PMID:35014868
Probiotic improves symptomatic and viral clearance in Covid19 outpatients: a randomized, quadruple-blinded, placebo-controlled trial. PMID:35014600
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. PMID:35013291
Consistent changes in the intestinal microbiota of Atlantic salmon fed insect meal diets. PMID:35012688
A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer. PMID:35012354
Impact of Dietary Sodium Butyrate and Salinomycin on Performance and Intestinal Microbiota in a Broiler Gut Leakage Model. PMID:35011218
Relationships among Indicators of Metabolism, Mammary Health and the Microbiomes of Periparturient Holstein Cows. PMID:35011109
Vitamin D Supplementation in Exclusively Breastfed Infants Is Associated with Alterations in the Fecal Microbiome. PMID:35011077
A Synbiotic Formulation Comprising Bacillus subtilis DSM 32315 and L-Alanyl-L-Glutamine Improves Intestinal Butyrate Levels and Lipid Metabolism in Healthy Humans. PMID:35011015
Resistance and Not Plant Fruit Traits Determine Root-Associated Bacterial Community Composition along a Domestication Gradient in Tomato. PMID:35009046
Hepatoprotective Effect of Cereal Vinegar Sediment in Acute Liver Injury Mice and Its Influence on Gut Microbiota. PMID:35004825
The Bacterial Microbiome of the Tomato Fruit Is Highly Dependent on the Cultivation Approach and Correlates With Flavor Chemistry. PMID:35003161
Yeast and Filamentous Fungi Microbial Communities in Organic Red Grape Juice: Effect of Vintage, Maturity Stage, SO2, and Bioprotection. PMID:35002998
Bacterial Signatures of Paediatric Respiratory Disease: An Individual Participant Data Meta-Analysis. PMID:35002989
MIMOSA2: A metabolic network-based tool for inferring mechanism-supported relationships in microbiome-metabolome data. PMID:34999748
Endoscopic ultrasound-guided fine-needle biopsy as a tool for studying the intra-tumoral microbiome in pancreatic ductal adenocarcinoma: a pilot study. PMID:34997106
Anatomy promotes neutral coexistence of strains in the human skin microbiome. PMID:34995483
Fibrolytic rumen bacteria of camel and sheep and their applications in the bioconversion of barley straw to soluble sugars for biofuel production. PMID:34995335
Potato tillage method is associated with soil microbial communities, soil chemical properties, and potato yield. PMID:34994959
Personal Perspectives on Plant Ribosomal RNA Genes Research: From Precursor-rRNA to Molecular Evolution. PMID:34992624
The Impact of Pipe Material on the Diversity of Microbial Communities in Drinking Water Distribution Systems. PMID:34992587
The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection. PMID:34991717
Effect of Bacillus amyloliquefaciens and Bacillus subtilis on fermentation, dynamics of bacterial community and their functional shifts of whole-plant corn silage. PMID:34991716
Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. PMID:34991714
Rhizosphere analysis of field-grown Panax ginseng with different degrees of red skin provides the basis for preventing red skin syndrome. PMID:34991491
Evaluating the aerobic xylene-degrading potential of the intrinsic microbial community of a legacy BTEX-contaminated aquifer by enrichment culturing coupled with multi-omics analysis: uncovering the role of Hydrogenophaga strains in xylene degradation. PMID:34989990
Total nitrogen influence bacterial community structure of active layer permafrost across summer and winter seasons in Ny-Ålesund, Svalbard. PMID:34989908
Characterization of the gut microbiota among Veterans with unique military-related exposures and high prevalence of chronic health conditions: A United States-Veteran Microbiome Project (US-VMP) study. PMID:34988495
In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. PMID:34987487
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea. PMID:34986141
Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils. PMID:34985338
The rumen liquid metatranscriptome of post-weaned dairy calves differed by pre-weaning ruminal administration of differentially-enriched, rumen-derived inocula. PMID:34983694
Urogenital Microbiota:Potentially Important Determinant of PD-L1 Expression in Male Patients with Non-muscle Invasive Bladder Cancer. PMID:34983384
Fecal microbiome profiles of neonatal dairy calves with varying severities of gastrointestinal disease. PMID:34982792
Characterization of captive and wild 13-lined ground squirrel cecal microbiotas using Illumina-based sequencing. PMID:34980290
Performance of distinct microbial based solutions in a Campylobacter infection challenge model in poultry. PMID:34980288
Exploring the role of gut microbiota in host feeding behavior among breeds in swine. PMID:34979903
The Association Between Breast Density and Gut Microbiota Composition at 2 Years Post-Menarche: A Cross-Sectional Study of Adolescents in Santiago, Chile. PMID:34976871
Seasonal Dynamics and Persistency of Endophyte Communities in Kalidium schrenkianum Shifts Under Radiation Stress. PMID:34975801
Genome-wide analysis uncovers tomato leaf lncRNAs transcriptionally active upon Pseudomonas syringae pv. tomato challenge. PMID:34972834
Characteristics of the Cervicovaginal Microenvironment in Childbearing-Age Women with Different Degrees of Cervical Lesions and HR-HPV Positivity. PMID:34970317
Taxonomic Structure of Rhizosphere Bacterial Communities and Its Association With the Accumulation of Alkaloidal Metabolites in Sophora flavescens. PMID:34970241
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution. PMID:34969995
A catalogue of 1,167 genomes from the human gut archaeome. PMID:34969981
Optimization and validation of two multiplex qPCR assays for the rapid detection of microorganisms commonly invading the amniotic cavity. PMID:34968795
Weight loss and high-protein, high-fiber diet consumption impact blood metabolite profiles, body composition, voluntary physical activity, fecal microbiota, and fecal metabolites of adult dogs. PMID:34967874
A Round Trip to the Desert: In situ Nanopore Sequencing Informs Targeted Bioprospecting. PMID:34966365
Sputum microbiota profiles of treatment-naïve TB patients in Uganda before and during first-line therapy. PMID:34966183
Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial. PMID:34965188
Nasopharyngeal Microbiota as an early severity biomarker in COVID-19 hospitalised patients. PMID:34963638
Cold Acclimation in Brachypodium Is Accompanied by Changes in Above-Ground Bacterial and Fungal Communities. PMID:34961295
Excess Vitamins or Imbalance of Folic Acid and Choline in the Gestational Diet Alter the Gut Microbiota and Obesogenic Effects in Wistar Rat Offspring. PMID:34960062
Effects of Malted Rice Amazake on Constipation Symptoms and Gut Microbiota in Children and Adults with Severe Motor and Intellectual Disabilities: A Pilot Study. PMID:34960021
Multi-Strain Probiotic Supplementation with a Product Containing Human-Native S. salivarius K12 in Healthy Adults Increases Oral S. salivarius. PMID:34959944
Impact of Oropharyngeal Administration of Colostrum in Preterm Newborns' Oral Microbiome. PMID:34959775
Natural rodent model of viral transmission reveals biological features of virus population dynamics. PMID:34958350
The gut microbiota of Cystidicola farionis parasitizing the swim bladder of the nosed charr morph Salvelinus malma complex in Lake Kronotskoe (Kamchatka, Russia). PMID:34957411
Alterations of Suckling Piglet Jejunal Microbiota Due to Infection With Porcine Epidemic Diarrhea Virus and Protection Against Infection by Lactobacillus salivarius. PMID:34957282
Dietary Amylose/Amylopectin Ratio Modulates Cecal Microbiota and Metabolites in Weaned Goats. PMID:34957184
Comparison of Female Genital Tract Cytokine and Microbiota Signatures Induced by Initiation of Intramuscular DMPA and NET-EN Hormonal Contraceptives - a Prospective Cohort Analysis. PMID:34956191
Quorum Sensing Regulates the Hydrolytic Enzyme Production and Community Composition of Heterotrophic Bacteria in Coastal Waters. PMID:34956143
Microbial Community Response to Polysaccharide Amendment in Anoxic Hydrothermal Sediments of the Guaymas Basin. PMID:34956126
Dietary Fiber Influences Bacterial Community Assembly Processes in the Gut Microbiota of Durco × Bamei Crossbred Pig. PMID:34956107
Dietary Quercetin Supplementation Attenuates Diarrhea and Intestinal Damage by Regulating Gut Microbiota in Weanling Piglets. PMID:34950418
tascCODA: Bayesian Tree-Aggregated Analysis of Compositional Amplicon and Single-Cell Data. PMID:34950190
Convergent Microbial Community Formation in Replicate Anaerobic Reactors Inoculated from Different Sources and Treating Ersatz Crew Waste. PMID:34947905
Microbial Community Successional Changes in a Full-Scale Mesophilic Anaerobic Digester from the Start-Up to the Steady-State Conditions. PMID:34946180
Peat-Inhabiting Verrucomicrobia of the Order Methylacidiphilales Do Not Possess Methanotrophic Capabilities. PMID:34946166
Relationships between the Gut Microbiota of Juvenile Black Sea Bream (Acanthopagrus schlegelii) and Associated Environment Compartments in Different Habitats. PMID:34946158
Insights into the Anaerobic Hydrolysis Process for Extracting Embedded EPS and Metals from Activated Sludge. PMID:34946124
High-Fructose Diet Alters Intestinal Microbial Profile and Correlates with Early Tumorigenesis in a Mouse Model of Barrett's Esophagus. PMID:34946037
Identification of Bull Semen Microbiome by 16S Sequencing and Possible Relationships with Fertility. PMID:34946031
The Efficiency of Probiotics Administrated via Different Routes and Doses in Enhancing Production Performance, Meat Quality, Gut Morphology, and Microbial Profile of Broiler Chickens. PMID:34944382
The Effects of Non-Fiber Carbohydrate Content and Forage Type on Rumen Microbiome of Dairy Cows. PMID:34944297
Effects of Dietary Tributyrin on Growth Performance, Biochemical Indices, and Intestinal Microbiota of Yellow-Feathered Broilers. PMID:34944202
The Use of Ascophyllum nodosum and Bacillus subtilis C-3102 in the Management of Canine Chronic Inflammatory Enteropathy: A Pilot Study. PMID:34944195
Culture-Independent Survey of Thermophilic Microbial Communities of the North Caucasus. PMID:34943267
Effect of Olive Cake and Cactus Cladodes Incorporation in Goat Kids' Diet on the Rumen Microbial Community Profile and Meat Fatty Acid Composition. PMID:34943152
Assessment of Changes in the Oral Microbiome That Occur in Dogs with Periodontal Disease. PMID:34941818
Site and land-use associations of soil bacteria and fungi define core and indicative taxa. PMID:34940884
Physical Activity and Dietary Composition Relate to Differences in Gut Microbial Patterns in a Multi-Ethnic Cohort-The HELIUS Study. PMID:34940616
Pi-Dan-Jian-Qing Decoction Ameliorates Type 2 Diabetes Mellitus Through Regulating the Gut Microbiota and Serum Metabolism. PMID:34938667
Oil and Gas Wastewater Components Alter Streambed Microbial Community Structure and Function. PMID:34938277
Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species. PMID:34937940
Performance of Conventional Urine Culture Compared to 16S rRNA Gene Amplicon Sequencing in Children with Suspected Urinary Tract Infection. PMID:34937185
Understanding of the Site-Specific Microbial Patterns towards Accurate Identification for Patients with Diarrhea-Predominant Irritable Bowel Syndrome. PMID:34937163
Effect of cecal microbiota transplantation between different broiler breeds on the chick flora in the first week of life. PMID:34936955
Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50-2000 m) shaped by bacterial community composition and optical signature of DOM. PMID:34934099
Honey Bee Larval and Adult Microbiome Life Stages Are Effectively Decoupled with Vertical Transmission Overcoming Early Life Perturbations. PMID:34933445
Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species. PMID:34932575
Transmission studies and the composition of prokaryotic communities associated with healthy and diseased Aplysina cauliformis sponges suggest that Aplysina Red Band Syndrome is a prokaryotic polymicrobial disease. PMID:34931677
Soil minerals affect taxon-specific bacterial growth. PMID:34931028
Deviated and early unsustainable stunted development of gut microbiota in children with autism spectrum disorder. PMID:34930815
Glutamic acid reshapes the plant microbiota to protect plants against pathogens. PMID:34930485
Assessing the impact of storage time on the stability of stool microbiota richness, diversity, and composition. PMID:34930464
The effects of Levilactobacillus brevis on the physiological parameters and gut microbiota composition of rats subjected to desynchronosis. PMID:34930242
Theobroma cacao L. agricultural soils with natural low and high cadmium (Cd) in Santander (Colombia), contain a persistent shared bacterial composition shaped by multiple soil variables and bacterial isolates highly resistant to Cd concentrations. PMID:34927107
Effect of the administration of probiotics on the fecal microbiota of adult individuals. PMID:34925778
Nutrient L-Alanine-Induced Germination of Bacillus Improves Proliferation of Spores and Exerts Probiotic Effects in vitro and in vivo. PMID:34925306
Implications of Seed Vault Storage Strategies for Conservation of Seed Bacterial Microbiomes. PMID:34925291
The Fungal Communities and Flavor Profiles in Different Types of High-Temperature Daqu as Revealed by High-Throughput Sequencing and Electronic Senses. PMID:34925290
Biochar Addition Altered Bacterial Community and Improved Photosynthetic Rate of Seagrass: A Mesocosm Study of Seagrass Thalassia hemprichii. PMID:34925287
The Polygonal Cell Shape and Surface Protein Layer of Anaerobic Methane-Oxidizing Methylomirabilis lanthanidiphila Bacteria. PMID:34925275
Multi-Enzyme Supplementation Modifies the Gut Microbiome and Metabolome in Breeding Hens. PMID:34925250
Rhythmic Clock Gene Expression in Atlantic Salmon Parr Brain. PMID:34925060
Fiber mixture-specific effect on distal colonic fermentation and metabolic health in lean but not in prediabetic men. PMID:34923911
Restoring an adequate dietary fiber intake by inulin supplementation: a pilot study showing an impact on gut microbiota and sociability in alcohol use disorder patients. PMID:34923905
Direct inhibition of phosphate transport by immune signaling in Arabidopsis. PMID:34919806
Effects of a blend of essential oils, medium-chain fatty acids, and a toxin-adsorbing mineral on diarrhea and gut microbiome of weanling pigs experimentally infected with a pathogenic Escherichia coli. PMID:34919701
Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland. PMID:34919560
Microbiome dataset of the cardiopulmonary nematode Angiostrongylus vasorum. PMID:34917705
Human Milk-Based or Bovine Milk-Based Fortifiers Differentially Impact the Development of the Gut Microbiota of Preterm Infants. PMID:34917555
Effects of probiotic supplements on growth performance and intestinal microbiota of partridge shank broiler chicks. PMID:34917423
Soybean Roots and Soil From High- and Low-Yielding Field Sites Have Different Microbiome Composition. PMID:34917042
Sex disparate gut microbiome and metabolome perturbations precede disease progression in a mouse model of Rett syndrome. PMID:34916612
The bacterial biome of ticks and their wildlife hosts at the urban-wildland interface. PMID:34913864
The Impacts of Short-Term NMN Supplementation on Serum Metabolism, Fecal Microbiota, and Telomere Length in Pre-Aging Phase. PMID:34912838
Phytoplankton settling quality has a subtle but significant effect on sediment microeukaryotic and bacterial communities. PMID:34911983
Gut microbiota features associated with Clostridioides difficile colonization in dairy calves. PMID:34910727
Supplementation with Exogenous Catalase from Penicillium notatum in the Diet Ameliorates Lipopolysaccharide-Induced Intestinal Oxidative Damage through Affecting Intestinal Antioxidant Capacity and Microbiota in Weaned Pigs. PMID:34908474
Autotoxin Rg1 Induces Degradation of Root Cell Walls and Aggravates Root Rot by Modifying the Rhizospheric Microbiome. PMID:34908454
Gut Mycobiota Dysbiosis in Pulmonary Tuberculosis Patients Undergoing Anti-Tuberculosis Treatment. PMID:34908436
Environmental DNA metabarcoding reveals comparable responses to agricultural stressors on different trophic levels of a freshwater community. PMID:34908199
You are more than what you eat: potentially adaptive enrichment of microbiome functions across bat dietary niches. PMID:34906258
The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers. PMID:34906246
Resilience of cold-water coral holobionts to thermal stress. PMID:34905712
Mammalian gut metabolomes mirror microbiome composition and host phylogeny. PMID:34903850
Analyzing gut microbiota composition in individual Anopheles mosquitoes after experimental treatment. PMID:34901787
Influence of Family Integrated Care on the Intestinal Microbiome of Preterm Infants With Necrotizing Enterocolitis and Enterostomy: A Preliminary Study. PMID:34900854
Rectal administration of buttermilk processed with medicinal plants alters gut microbiome in obese individuals. PMID:34900793
Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota. PMID:34900424
Ribo-Seq and RNA-Seq of TMA46 ( DFRP1) and GIR2 ( DFRP2) knockout yeast strains. PMID:34900236
Spatial and temporal dynamics of microbiomes and resistomes in broiler litter stockpiles. PMID:34900133
Identification of a New Infectious Pancreatic Necrosis Virus (IPNV) Variant in Atlantic Salmon (Salmo salar L.) that can Cause High Mortality Even in Genetically Resistant Fish. PMID:34899819
Different Effects of Thermophilic Microbiological Inoculation With and Without Biochar on Physicochemical Characteristics and Bacterial Communities in Pig Manure Composting. PMID:34899633
Inconsistent Patterns of Microbial Diversity and Composition Between Highly Similar Sequencing Protocols: A Case Study With Reef-Building Corals. PMID:34899629
Polar Cryoconite Associated Microbiota Is Dominated by Hemispheric Specialist Genera. PMID:34899626
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol. PMID:34897429
Carbon assimilating fungi from surface ocean to subseafloor revealed by coupled phylogenetic and stable isotope analysis. PMID:34893690
The relationship between equine pastern dermatitis, meteorological factors, and the skin microbiota. PMID:34888974
Protozoa populations are ecosystem engineers that shape prokaryotic community structure and function of the rumen microbial ecosystem. PMID:34887549
Early-Life Adversity Leaves Its Imprint on the Oral Microbiome for More Than 20 Years and Is Associated with Long-Term Immune Changes. PMID:34884490
Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions. PMID:34882708
Revealing microbial species diversity using sequence capture by hybridization. PMID:34882529
High stability and metabolic capacity of bacterial community promote the rapid reduction of easily decomposing carbon in soil. PMID:34880408
Deep nasal sinus cavity microbiota dysbiosis in Parkinson's disease. PMID:34880258
Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil. PMID:34879068
Prokaryotic communities in the historic silver mine Reiche Zeche. PMID:34878614
The Archaeal Transcription Termination Factor aCPSF1 is a Robust Phylogenetic Marker for Archaeal Taxonomy. PMID:34878325
Putative Familial Transmissible Bacteria of Various Body Niches Link with Home Environment and Children's Immune Health. PMID:34878304
Novel members of bacterial community during a short-term chilled storage of common carp (Cyprinus carpio). PMID:34877630
Developmental Stage, Solid Food Introduction, and Suckling Cessation Differentially Influence the Comaturation of the Gut Microbiota and Intestinal Epithelium in Rabbits. PMID:34875085
Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O2 Cyanobacterial Mat Community. PMID:34874776
Robust bacterial co-occurence community structures are independent of r- and K-selection history. PMID:34873246
Long-Term Overconsumption of Fat and Sugar Causes a Partially Reversible Pre-inflammatory Bowel Disease State. PMID:34869528
Comprehensive Compositional Analysis of the Slit Lamp Bacteriota. PMID:34869057
Categorization of the Ocular Microbiome in Japanese Stevens-Johnson Syndrome Patients With Severe Ocular Complications. PMID:34869055
Biogeography of the Respiratory Tract Microbiome in Patients With Malignant Tracheal Tumors. PMID:34868972
Tangnaikang Alleviates Hyperglycemia and Improves Gut Microbiota in Diabetic Mice. PMID:34868327
Metabarcoding Reveals Lacustrine Picocyanobacteria Respond to Environmental Change Through Adaptive Community Structuring. PMID:34867882
Microbiome of Field Grown Hemp Reveals Potential Microbial Interactions With Root and Rhizosphere Soil. PMID:34867858
Bacterial Abundance, Diversity and Activity During Long-Term Colonization of Non-biodegradable and Biodegradable Plastics in Seawater. PMID:34867851
Plant Growth Promotion Diversity in Switchgrass-Colonizing, Diazotrophic Endophytes. PMID:34867848
Insignificant Response of Bacterioplankton Community to Elevated pCO2 During a Short-Term Microcosm Experiment in a Subtropical Eutrophic Coastal Ecosystem. PMID:34867847
Infective endocarditis: Role of molecular techniques in early diagnosis. PMID:34866984
Gastrodin attenuates perfluorooctanoic acid-induced liver injury by regulating gut microbiota composition in mice. PMID:34866532
Amsterdam urban canals contain novel niches for methane-cycling microorganisms. PMID:34863018
Time-restricted feeding induces Lactobacillus- and Akkermansia-specific functional changes in the rat fecal microbiota. PMID:34862421
Defining and quantifying the core microbiome: Challenges and prospects. PMID:34862327
Biomarkers of Gut Microbiota in Chronic Spontaneous Urticaria and Symptomatic Dermographism. PMID:34858864
Size-Resolved Community Structure of Bacteria and Fungi Transported by Dust in the Middle East. PMID:34858365
Heat stress reduces the contribution of diazotrophs to coral holobiont nitrogen cycling. PMID:34857934
Gut microbiota develop towards an adult profile in a sex-specific manner during puberty. PMID:34857814
Intestinal microbiota modulation and improved growth in pigs with post-weaning antibiotic and ZnO supplementation but only subtle microbiota effects with Bacillus altitudinis. PMID:34857778
Multivariate associative patterns between the gut microbiota and large-scale brain network connectivity. PMID:34856861
Determinism of microbial community assembly by drastic environmental change. PMID:34855810
Predation increases multiple components of microbial diversity in activated sludge communities. PMID:34853477
Metabarcoding analysis of trophic sources and linkages in the plankton community of the Kuroshio and neighboring waters. PMID:34853330
Feeding with Sustainably Sourdough Bread Has the Potential to Promote the Healthy Microbiota Metabolism at the Colon Level. PMID:34851178
Altered gut ecosystems plus the microbiota's potential for rapid evolution: A recipe for inevitable change with unknown consequences. PMID:34849201
The meta-gut: community coalescence of animal gut and environmental microbiomes. PMID:34848778
Actinomadura graeca sp. nov.: A novel producer of the macrocyclic antibiotic zelkovamycin. PMID:34847153
Fecal bacterial communities of wild black capuchin monkeys (Sapajus nigritus) from the Atlantic Forest biome in Southern Brazil are divergent from those of other non-human primates. PMID:34841339
Passive exposure to cannabidiol oil does not cause microbiome dysbiosis in larval zebrafish. PMID:34841336
Topography effect on Aspergillus flavus occurrence and aflatoxin B1 contamination associated with peanut. PMID:34841313
Diversity of Lactic Acid Bacteria Involved in the Fermentation of Awa-bancha. PMID:34840198
Gut microbiota-based vaccination engages innate immunity to improve blood glucose control in obese mice. PMID:34839023
Effect of P availability on straw-induced priming effect was mainly regulated by fungi in croplands. PMID:34837124
Water Kefir and Derived Pasteurized Beverages Modulate Gut Microbiota, Intestinal Permeability and Cytokine Production In Vitro. PMID:34836151
Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model. PMID:34836120
BMI, Alcohol Consumption and Gut Microbiome Species Richness Are Related to Structural and Functional Neurological Abnormalities. PMID:34835999
Gut Microbiota Reshaped by Pectin Treatment Improves Liver Steatosis in Obese Mice. PMID:34835981
Diversity and Hydrocarbon-Degrading Potential of Deep-Sea Microbial Community from the Mid-Atlantic Ridge, South of the Azores (North Atlantic Ocean). PMID:34835516
Bacterial Communities in the Embryo of Maize Landraces: Relation with Susceptibility to Fusarium Ear Rot. PMID:34835513
Diversity Indices of Plant Communities and Their Rhizosphere Microbiomes: An Attempt to Find the Connection. PMID:34835464
Insights into the Oral Bacterial Microbiota of Sows. PMID:34835441
Transmission of Escherichia coli from Manure to Root Zones of Field-Grown Lettuce and Leek Plants. PMID:34835415
Factors Driving Bacterial Microbiota of Eggs from Commercial Hatcheries of European Seabass and Gilthead Seabream. PMID:34835401
Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient. PMID:34835321
Spatial Variation of Cladophora Epiphytes in the Nan River, Thailand. PMID:34834629
Assessment of the Effects of Dietary Vitamin D Levels on Olanzapine-Induced Metabolic Side Effects: Focus on the Endocannabinoidome-Gut Microbiome Axis. PMID:34830242
Effect of the Manufacturing Process on the Microbiota, Organoleptic Properties and Volatilome of Three Salmon-Based Products. PMID:34828798
Emodin Improves Intestinal Health and Immunity through Modulation of Gut Microbiota in Mice Infected by Pathogenic Escherichia coli O1. PMID:34828045
Gut Microbiota in Canine Idiopathic Epilepsy: Effects of Disease and Treatment. PMID:34827852
In Vitro Incubations Do Not Reflect In Vivo Differences Based on Ranking of Low and High Methane Emitters in Dairy Cows. PMID:34827843
Investigating the Reciprocal Interrelationships among the Ruminal Microbiota, Metabolome, and Mastitis in Early Lactating Holstein Dairy Cows. PMID:34827839
A Pilot Study: Composition and Diversity of 16S rRNA Based Skin Bacterial Microbiome in Indonesian Atopic Dermatitis Population. PMID:34824539
Wolbachia reduces virus infection in a natural population of Drosophila. PMID:34824354
Cross-feeding between intestinal pathobionts promotes their overgrowth during undernutrition. PMID:34824233
Revealing the composition of the eukaryotic microbiome of oyster spat by CRISPR-Cas Selective Amplicon Sequencing (CCSAS). PMID:34823604
Disentangling environmental effects in microbial association networks. PMID:34823593
Evidence for host-microbiome co-evolution in apple. PMID:34823272
MicroRNA-222 Transferred From Semen Extracellular Vesicles Inhibits Sperm Apoptosis by Targeting BCL2L11. PMID:34820370
Horsenettle (Solanum carolinense) fruit bacterial communities are not variable across fine spatial scales. PMID:34820171
Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more. PMID:34820157
Giant sulfur bacteria (Beggiatoaceae) from sediments underlying the Benguela upwelling system host diverse microbiomes. PMID:34818329
Seasonal Dynamics of Methanotrophic Bacteria in a Boreal Oil Sands End Pit Lake. PMID:34818104
Effects of ultra-long fermentation time on the microbial community and flavor components of light-flavor Xiaoqu Baijiu based on fermentation tanks. PMID:34817705
Bacterioneuston and Bacterioplankton Structure and Abundance in Two Trophically Distinct Marine Environments - a Marine Lake and the Adjacent Coastal Site on the Adriatic Sea. PMID:34817641
Unexpected cryptic species among streptophyte algae most distant to land plants. PMID:34814752
Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome. PMID:34812652
The postnatal window is critical for the development of sex-specific metabolic and gut microbiota outcomes in offspring. PMID:34812123
Airway microbiome dynamics and relationship to ventilator-associated infection in intubated pediatric patients. PMID:34811963
Endophytic bacterial communities are associated with leaf mimicry in the vine Boquila trifoliolata. PMID:34811460
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis. PMID:34811423
Insights into the nutritional properties and microbiome diversity in sweet and sour yogurt manufactured in Bangladesh. PMID:34811394
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts. PMID:34809575
Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome. PMID:34809450
Skin Mycobiota of the Captive Giant Panda (Ailuropoda melanoleuca) and the Distribution of Opportunistic Dermatomycosis-Associated Fungi in Different Seasons. PMID:34805328
Intercropping Systems Modify Desert Plant-Associated Microbial Communities and Weaken Host Effects in a Hyper-Arid Desert. PMID:34803977
Microbial Transformation of Chlordecone and Two Transformation Products Formed During in situ Chemical Reduction. PMID:34803959
Photoheterotrophy by aerobic anoxygenic bacteria modulates carbon fluxes in a freshwater lake. PMID:34802055
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. PMID:34795375
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis. PMID:34795326
Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut. PMID:34795270
Improved quantitative microbiome profiling for environmental antibiotic resistance surveillance. PMID:34794510
Sediment Microbiota in Response to Circuitry of Sediment Microbial Fuel Cells, Revealed by 16S rRNA Gene Amplicon Sequencing. PMID:34792378
Small-scale agricultural grassland management can affect soil fungal community structure as much as continental scale geographic patterns. PMID:34792119
Detection of Pathogenic and Beneficial Microbes for Roselle Wilt Disease. PMID:34790182
Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus. PMID:34790180
Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean-Atlantic Gradient. PMID:34790173
Bacterial response to spatial gradients of algal-derived nutrients in a porous microplate. PMID:34789844
Application of electric potential improves ethanol production from xylose by active sludge. PMID:34789328
The Clinical Utility of Two High-Throughput 16S rRNA Gene Sequencing Workflows for Taxonomic Assignment of Unidentifiable Bacterial Pathogens in Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. PMID:34788113
Contrasting Microbiome Dynamics of Putative Denitrifying Bacteria in Two Octocoral Species Exposed to Dissolved Organic Carbon (DOC) and Warming. PMID:34788073
Multispecies Populations of Methanotrophic Methyloprofundus and Cultivation of a Likely Dominant Species from the Iheya North Deep-Sea Hydrothermal Field. PMID:34788070
Genus-Specific Carbon Fixation Activity Measurements Reveal Distinct Responses to Oxygen among Hydrothermal Vent Campylobacteria. PMID:34788061
Ultrastructure of Organohalide-Respiring Dehalococcoidia Revealed by Cryo-Electron Tomography. PMID:34788060
Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities. PMID:34785722
Fifteen shades of clay: distinct microbial community profiles obtained from bentonite samples by cultivation and direct nucleic acid extraction. PMID:34785699
Mono-specific algal diets shape microbial networking in the gut of the sea urchin Tripneustes gratilla elatensis. PMID:34782025
Fusobacterium nucleatum drives a pro-inflammatory intestinal microenvironment through metabolite receptor-dependent modulation of IL-17 expression. PMID:34781821
Use of universal primers for the 18S ribosomal RNA gene and whole soil DNAs to reveal the taxonomic structures of soil nematodes by high-throughput amplicon sequencing. PMID:34780544
Geobiology of Andean Microbial Ecosystems Discovered in Salar de Atacama, Chile. PMID:34777316
Species-Level Spatio-Temporal Dynamics of Cyanobacteria in a Hard-Water Temperate Lake in the Southern Baltics. PMID:34777314
Sea Ice Dynamics Drive Benthic Microbial Communities in McMurdo Sound, Antarctica. PMID:34777294
Sargassum Differentially Shapes the Microbiota Composition and Diversity at Coastal Tide Sites and Inland Storage Sites on Caribbean Islands. PMID:34777271
Dietary lactoferrin has differential effects on gut microbiota in young versus middle-aged APPswe/PS1dE9 transgenic mice but no effects on cognitive function. PMID:34776831
Classification and prediction of Mycobacterium Avium subsp. Paratuberculosis (MAP) shedding severity in cattle based on young stock heifer faecal microbiota composition using random forest algorithms. PMID:34776001
Fermentation quality of herbal tea residue and its application in fattening cattle under heat stress. PMID:34772402
Metabolomics Analyses Reveal Metabolites Affected by Plant Growth-Promoting Endophytic Bacteria in Roots of the Halophyte Mesembryanthemum crystallinum. PMID:34769244
The Concentration of Organic Acids in Cranberry Juice Modulates the Gut Microbiota in Mice. PMID:34768966
Uniqueness and Dependence of Bacterial Communities on Microplastics: Comparison with Water, Sediment, and Soil. PMID:34767048
Mixture of Five Fermented Herbs (Zhihuasi Tk) Alters the Intestinal Microbiota and Promotes the Growth Performance in Piglets. PMID:34764942
Spatial and temporal dynamics of SAR11 marine bacteria across a nearshore to offshore transect in the tropical Pacific Ocean. PMID:34760357
Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior. PMID:34759912
Unexpected diversity among small-scale sample replicates of defined plant root compartments. PMID:34759302
The Spanish gut microbiome reveals links between microorganisms and Mediterranean diet. PMID:34759297
Ceftriaxone causes dysbiosis and changes intestinal structure in adjuvant obesity treatment. PMID:34757518
Enrichment of Burkholderia in the Rhizosphere by Autotoxic Ginsenosides to Alleviate Negative Plant-Soil Feedback. PMID:34756064
Effect of voluntary exercise upon the metabolic syndrome and gut microbiome composition in mice. PMID:34755487
Metagenomic analysis of Raphidiopsisraciborskii microbiome: beyond the individual. PMID:34754266
Linking gut microbiome with the feeding behavior of the Arunachal macaque (Macaca munzala). PMID:34754005
HashSeq: a Simple, Scalable, and Conservative De Novo Variant Caller for 16S rRNA Gene Data Sets. PMID:34751586
Evidence of MHC class I and II influencing viral and helminth infection via the microbiome in a non-human primate. PMID:34748618
RESCRIPt: Reproducible sequence taxonomy reference database management. PMID:34748542
Effects of fecal microbiota transplant on DNA methylation in subjects with metabolic syndrome. PMID:34747338
Data of 16S rRNA gene amplicon-based metagenomic signatures of arecanut rhizosphere soils in Yellow Leaf Disease (YLD) endemic region of India. PMID:34746339
Comparative Study of the Gut Microbiota Among Four Different Marine Mammals in an Aquarium. PMID:34745077
Modulating Drought Stress Response of Maize by a Synthetic Bacterial Community. PMID:34745050
Bacterial Communities Present Distinct Co-occurrence Networks in Sediment and Water of the Thermokarst Lakes in the Yellow River Source Area. PMID:34745028
Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes. PMID:34745022
Microbiome-Specific Statistical Modeling Identifies Interplay Between Gastrointestinal Microbiome and Neurobehavioral Outcomes in Patients With Autism: A Case Control Study. PMID:34744810
Gut microbiota of adults with asthma is broadly similar to non-asthmatics in a large population with varied ethnic origins. PMID:34743654
Long-term dynamics of the human oral microbiome during clinical disease progression. PMID:34742306
Physicochemical and Biotic Changes and the Phylogenetic Evenness of Microbial Community in Soil Subjected to Phytoreclamation. PMID:34741194
Autochthonous fungi are central components in microbial community structure in raw fermented sausages. PMID:34739743
Hexavalent Chromium Removal and Prokaryotic Community Analysis in Glass Column Reactor Packed with Aspen Wood as Solid Organic Substrate. PMID:34739702
Disruption of autophagy by increased 5-HT alters gut microbiota and enhances susceptibility to experimental colitis and Crohn's disease. PMID:34739317
Composition and functional profiles of microbial communities in two geochemically and mineralogically different caves. PMID:34738169
Unraveling differences in fecal microbiota stability in mammals: from high variable carnivores and consistently stable herbivores. PMID:34736528
Invasive Amphibian Gut Microbiota and Functions Shift Differentially in an Expanding Population but Remain Conserved Across Established Populations. PMID:34735604
Identification of heat responsive genes in pea stipules and anthers through transcriptional profiling. PMID:34735457
Microbial Diversity Analysis Using 16S rRNA Gene Amplicon Sequencing of Rhizosphere Soils from Double-Cropping Rice and Rice-Shrimp Farming Systems in Soc Trang, Vietnam. PMID:34734766
Untargeted Gut Metabolomics to Delve the Interplay between Selenium Supplementation and Gut Microbiota. PMID:34734730
Genome, Transcriptome, and Germplasm Sequencing Uncovers Functional Variation in the Warm-Season Grain Legume Horsegram Macrotyloma uniflorum (Lam.) Verdc. PMID:34733308
Diversity, Functions and Antibiotic Resistance of Sediment Microbial Communities From Lake Geneva Are Driven by the Spatial Distribution of Anthropogenic Contamination. PMID:34733255
Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium. PMID:34732889
Sea ice presence is linked to higher carbon export and vertical microbial connectivity in the Eurasian Arctic Ocean. PMID:34732822
Sex-specific relationships of the infant microbiome and early-childhood behavioral outcomes. PMID:34732816
Utilizing a reductionist model to study host-microbe interactions in intestinal inflammation. PMID:34732258
Surface Water Intrusion, Land Use Impacts, and Bacterial Community Composition in Shallow Groundwater Wells Supplying Potable Water in Sparsely Populated Areas of a Boreal Region. PMID:34730413
Distinct methane-dependent biogeochemical states in Arctic seafloor gas hydrate mounds. PMID:34728618
Burkholderiaceae and Multidrug Resistance Genes Are Key Players in Resistome Development in a Germfree Soil Model. PMID:34726494
Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome. PMID:34724979
FASTAFS: file system virtualisation of random access compressed FASTA files. PMID:34724897
Supplementing a Clay Mineral-Based Feed Additive Modulated Fecal Microbiota Composition, Liver Health, and Lipid Serum Metabolome in Dairy Cows Fed Starch-Rich Diets. PMID:34722695
Lactobacillus johnsonii N6.2 and Blueberry Phytophenols Affect Lipidome and Gut Microbiota Composition of Rats Under High-Fat Diet. PMID:34722616
Lactobacillus plantarum TWK10 Attenuates Aging-Associated Muscle Weakness, Bone Loss, and Cognitive Impairment by Modulating the Gut Microbiome in Mice. PMID:34722603
Gut Microbiota Composition and Fecal Metabolic Profiling in Patients With Diabetic Retinopathy. PMID:34722512
Changes in soil bacterial and fungal communities in response to Bacillus megaterium NCT-2 inoculation in secondary salinized soil. PMID:34721987
Metagenomic Analysis Reveals Neisseria bacilliformis Variation in the Early Childhood Caries Plaque Microbiome. PMID:34721624
Large-Scale Characterization of the Soil Microbiome in Ancient Tea Plantations Using High-Throughput 16S rRNA and Internal Transcribed Spacer Amplicon Sequencing. PMID:34721345
Microbial Diversity Under the Influence of Natural Gas Storage in a Deep Aquifer. PMID:34721313
Effects of Zinc Source and Enzyme Addition on the Fecal Microbiota of Dogs. PMID:34721312
Functional Profiling Reveals Altered Metabolic Activity in Divers' Oral Microbiota During Commercial Heliox Saturation Diving. PMID:34721054
High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). PMID:34719668
Effects of graded inclusion levels of raw garbanzo beans on apparent total tract digestibility, fecal quality, and fecal fermentative end-products and microbiota in extruded feline diets. PMID:34718604
Technical challenges regarding the use of formalin-fixed paraffin embedded (FFPE) tissue specimens for the detection of bacterial alterations in colorectal cancer. PMID:34715774
Genomic convergence between Akkermansia muciniphila in different mammalian hosts. PMID:34715771
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study. PMID:34713611
Lactobacillus reuteri Alleviates Gastrointestinal Toxicity of Rituximab by Regulating the Proinflammatory T Cells in vivo. PMID:34712207
Microbial community networks across body sites are associated with susceptibility to respiratory infections in infants. PMID:34711948
The treasure inside barley seeds: microbial diversity and plant beneficial bacteria. PMID:34711269
The soil microbiomics of intact, degraded and partially-restored semi-arid succulent thicket (Albany Subtropical Thicket). PMID:34707927
Characterization of Frond and Flower Development and Identification of FT and FD Genes From Duckweed Lemna aequinoctialis Nd. PMID:34707626
Oral Pathobiont-Induced Changes in Gut Microbiota Aggravate the Pathology of Nonalcoholic Fatty Liver Disease in Mice. PMID:34707622
Contribution of Maternal and Paternal Transmission to Bacterial Colonization in Nematostella vectensis. PMID:34707584
Microbial diversity in Mediterranean sponges as revealed by metataxonomic analysis. PMID:34707182
Bifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection. PMID:34705611
Deciphering the Role of Mucosal Immune Responses and the Cervicovaginal Microbiome in Resistance to HIV Infection in HIV-Exposed Seronegative (HESN) Women. PMID:34704803
Fecal Microbiota Transplantation Increases Colonic IL-25 and Dampens Tissue Inflammation in Patients with Recurrent Clostridioides difficile. PMID:34704776
Identifying optimal bioinformatics protocols for aerosol microbial community data. PMID:34703658
Vertebrate host phylogeny influences gut archaeal diversity. PMID:34702978
Microbiomes of an oyster are shaped by metabolism and environment. PMID:34702926
Metabarcoding insights into the diet and trophic diversity of six declining farmland birds. PMID:34702920
Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of Microcoleus. PMID:34700377
Arabidopsis assemble distinct root-associated microbiomes through the synthesis of an array of defense metabolites. PMID:34699568
Dimethyl sulfide mediates microbial predator-prey interactions between zooplankton and algae in the ocean. PMID:34697459
Prolonged Gut Dysbiosis and Fecal Excretion of Hepatitis A Virus in Patients Infected with Human Immunodeficiency Virus. PMID:34696531
A high abundance of Firmicutes in the intestine of chinese mitten crabs (Eriocheir sinensis) cultured in an alkaline region. PMID:34693464
Bacterial Inhibition on Beauveria bassiana Contributes to Microbiota Stability in Delia antiqua. PMID:34690955
Legacy Metal Contaminants and Excess Nutrients in Low Flow Estuarine Embayments Alter Composition and Function of Benthic Bacterial Communities. PMID:34690940
Soil initial bacterial diversity and nutrient availability determine the rate of xenobiotic biodegradation. PMID:34689422
Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F1 Anopheles albimanus originating from different sites. PMID:34688298
Persistence of Escherichia coli in the microbiomes of red Romaine lettuce (Lactuca sativa cv. 'Outredgeous') and mizuna mustard (Brassica rapa var. japonica) - does seed sanitization matter? PMID:34686151
Impact of the gut microecology on Campylobacter presence revealed by comparisons of the gut microbiota from chickens raised on litter or in individual cages. PMID:34686130
Triterpenoid and Steroidal Saponins Differentially Influence Soil Bacterial Genera. PMID:34685998
Mother's Milk Microbiome Shaping Fecal and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Analysis. PMID:34684601
A Six-Day, Lifestyle-Based Immersion Program Mitigates Cardiovascular Risk Factors and Induces Shifts in Gut Microbiota, Specifically Lachnospiraceae, Ruminococcaceae, Faecalibacterium prausnitzii: A Pilot Study. PMID:34684459
Effect of Environmental Exposures on the Gut Microbiota from Early Infancy to Two Years of Age. PMID:34683461
Scalp Microbiome and Sebum Composition in Japanese Male Individuals with and without Androgenetic Alopecia. PMID:34683453
The Characteristics of Intestinal Bacterial Community in Three Omnivorous Fishes and Their Interaction with Microbiota from Habitats. PMID:34683446
Cross-Sectional Analysis of the Microbiota of Human Gut and Its Direct Environment in a Household Cohort with High Background of Antibiotic Use. PMID:34683436
Combining Culture-Dependent and Independent Approaches for the Optimization of Epoxiconazole and Fludioxonil-Degrading Bacterial Consortia. PMID:34683430
Diversity and Activity of Sulfate-Reducing Prokaryotes in Kamchatka Hot Springs. PMID:34683394
Dietary Microencapsulated Blend of Organic Acids and Plant Essential Oils Affects Intestinal Morphology and Microbiome of Rainbow Trout (Oncorhynchus mykiss). PMID:34683384
Bioemulsification and Microbial Community Reconstruction in Thermally Processed Crude Oil. PMID:34683375
Assembly of a Benthic Microbial Community in a Eutrophic Bay with a Long History of Oyster Culturing. PMID:34683340
The Nasopharyngeal, Ruminal, and Vaginal Microbiota and the Core Taxa Shared across These Microbiomes in Virgin Yearling Heifers Exposed to Divergent In Utero Nutrition during Their First Trimester of Gestation and in Pregnant Beef Heifers in Response to Mineral Supplementation. PMID:34683332
Continuous Sugarcane Planting Negatively Impacts Soil Microbial Community Structure, Soil Fertility, and Sugarcane Agronomic Parameters. PMID:34683329
Serra da Estrela PDO Cheese Microbiome as Revealed by Next Generation Sequencing. PMID:34683326
Comparison of Gut Bacterial Communities of Fall Armyworm (Spodoptera frugiperda) Reared on Different Host Plants. PMID:34681926
Supplementation with Lactiplantibacillus plantarum IMC 510 Modifies Microbiota Composition and Prevents Body Weight Gain Induced by Cafeteria Diet in Rats. PMID:34681831
The Bacterial Diversity of Spontaneously Fermented Dairy Products Collected in Northeast Asia. PMID:34681370
Gut Microbiota Cannot Compensate the Impact of (quasi) Aposymbiosis in Blattella germanica. PMID:34681115
The Origin of Plasma-Derived Bacterial Extracellular Vesicles in Healthy Individuals and Patients with Inflammatory Bowel Disease: A Pilot Study. PMID:34681030
Investigating the Effect of an Oxytetracycline Treatment on the Gut Microbiome and Antimicrobial Resistance Gene Dynamics in Nile Tilapia (Oreochromis niloticus). PMID:34680794
Microbiome Associated with the Mycangia of Female and Male Adults of the Ambrosia Beetle Platypus cylindrus Fab. (Coleoptera: Curculionidae). PMID:34680650
Effects of Dietary Glucose Oxidase Supplementation on the Performance, Apparent Ileal Amino Acids Digestibility, and Ileal Microbiota of Broiler Chickens. PMID:34679930
Free Faecal Water: Analysis of Horse Faecal Microbiota and the Impact of Faecal Microbial Transplantation on Symptom Severity. PMID:34679798
Short-chain fatty acid administration via water acidifier improves feed efficiency and modulates fecal microbiota in weaned piglets. PMID:34679178
The Impact of Maternal and Piglet Low Protein Diet and Their Interaction on the Porcine Liver Transcriptome around the Time of Weaning. PMID:34679062
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. PMID:34677568
Nutrient Inputs Stimulate Mercury Methylation by Syntrophs in a Subarctic Peatland. PMID:34675906
Changes in the gut microbiota diversity of brown frogs (Rana dybowskii) after an antibiotic bath. PMID:34674716
Draft genome and description of Waterburya agarophytonicola gen. nov. sp. nov. (Pleurocapsales, Cyanobacteria): a seaweed symbiont. PMID:34674103
The impact of the Th17:Treg axis on the IgA-Biome across the glycemic spectrum. PMID:34669745
Synthetic co-culture of autotrophic Clostridium carboxidivorans and chain elongating Clostridium kluyveri monitored by flow cytometry. PMID:34669248
Mechanistic Insight into Yeast Bloom in a Lactic Acid Bacteria Relaying-Community in the Start of Sourdough Microbiota Evolution. PMID:34668750
Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers. PMID:34666677
Antibiotics accelerate growth at the expense of immunity. PMID:34666517
Bile acid-independent protection against Clostridioides difficile infection. PMID:34665847
Ecological Dynamics and Co-occurrences Among Prokaryotes and Microeukaryotes in a Diatom Bloom Process in Xiangshan Bay, China. PMID:34665286
Microbiome Clusters Disclose Physiologic Variances in Dairy Cows Challenged by Calving and Lipopolysaccharides. PMID:34665011
Bisdemethoxycurcumin attenuates lipopolysaccharide-induced intestinal damage through improving barrier integrity, suppressing inflammation, and modulating gut microbiota in broilers. PMID:34664650
The microbiome of dental and peri-implant subgingival plaque during peri-implant mucositis therapy: A randomized clinical trial. PMID:34664294
A Prospective, Open-Label Pilot Study of Concurrent Male Partner Treatment for Bacterial Vaginosis. PMID:34663095
Microbiome Compositions From Infertile Couples Seeking In Vitro Fertilization, Using 16S rRNA Gene Sequencing Methods: Any Correlation to Clinical Outcomes? PMID:34660337
Basalt-Hosted Microbial Communities in the Subsurface of the Young Volcanic Island of Surtsey, Iceland. PMID:34659155
Gut Microbiota Dysbiosis Influences Metabolic Homeostasis in Spodoptera frugiperda. PMID:34659154
Effects of Sugarcane and Soybean Intercropping on the Nitrogen-Fixing Bacterial Community in the Rhizosphere. PMID:34659143
The Fecal Microbiota of Dogs Switching to a Raw Diet Only Partially Converges to That of Wolves. PMID:34659139
Serum Oxytocin Level Correlates With Gut Microbiome Dysbiosis in Children With Autism Spectrum Disorder. PMID:34658767
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools. PMID:34657989
Early life feeding accelerates gut microbiome maturation and suppresses acute post-weaning stress in piglets. PMID:34655283
Functional attractors in microbial community assembly. PMID:34653368
Comparative Analyses of Phyllosphere Bacterial Communities and Metabolomes in Newly Developed Needles of Cunninghamia lanceolata (Lamb.) Hook. at Four Stages of Stand Growth. PMID:34650578
Diet diversity and environment determine the intestinal microbiome and bacterial pathogen load of fire salamanders. PMID:34650115
Transcriptional expression changes during compensatory plasticity in the terminal ganglion of the adult cricket Gryllus bimaculatus. PMID:34649498
Responses of Root Endophytes to Phosphorus Availability in Peach Rootstocks With Contrasting Phosphorus-Use Efficiencies. PMID:34646286
L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways. PMID:34646244
Footwear microclimate and its effects on the microbial community of the plantar skin. PMID:34645918
Sulphate-reducing bacterial community structure from produced water of the Periquito and Galo de Campina onshore oilfields in Brazil. PMID:34645885
Global Patterns and Climatic Controls of Dust-Associated Microbial Communities. PMID:34643450
Profiling of RNA Viruses in Biting Midges (Ceratopogonidae) and Related Diptera from Kenya Using Metagenomics and Metabarcoding Analysis. PMID:34643419
Altered metabolic state impedes limb regeneration in salamanders. PMID:34643071
Microbiota and transcriptome changes of Culex pipiens pallens larvae exposed to Bacillus thuringiensis israelensis. PMID:34642414
Crop host signatures reflected by co-association patterns of keystone Bacteria in the rhizosphere microbiota. PMID:34641981
Differences of Gut Microbiota in the Freshwater Blackworm (Lumbriculus variegatus: Oligochaeta) in Two Different Habitat Conditions. PMID:34639598
Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity. PMID:34636675
Protistan-Bacterial Microbiota Exhibit Stronger Species Sorting and Greater Network Connectivity Offshore than Nearshore across a Coast-to-Basin Continuum. PMID:34636671
Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques. PMID:34636122
Dietary Energy Levels Affect Carbohydrate Metabolism-Related Bacteria and Improve Meat Quality in the Longissimus Thoracis Muscle of Yak (Bos grunniens). PMID:34631849
The Skin Microbiome of Patients With Atopic Dermatitis Normalizes Gradually During Treatment. PMID:34631601
Transmission of Bacterial Symbionts With and Without Genome Erosion Between a Beetle Host and the Plant Environment. PMID:34630349
Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human Pathogen. PMID:34630346
Inoculation of mother's own milk could personalize pasteurized donor human milk used for feeding preterm infants. PMID:34627277
"Longitudinal Fecal Microbiome Study of Total Body Irradiated Mice Treated With Radiation Mitigators Identifies Bacterial Associations With Survival". PMID:34621689
Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds. PMID:34621247
Coordination of root auxin with the fungus Piriformospora indica and bacterium Bacillus cereus enhances rice rhizosheath formation under soil drying. PMID:34621017
Capacity of soil bacteria to reach the phyllosphere and convergence of floral communities despite soil microbiota variation. PMID:34620708
25-hydroxycholecalciferol reverses heat induced alterations in bone quality in finisher broilers associated with effects on intestinal integrity and inflammation. PMID:34620220
Manipulating exudate composition from root apices shapes the microbiome throughout the root system. PMID:34618027
A cross-sectional study of the nasal and fecal microbiota of sows from different health status within six commercial swine farms. PMID:34616608
Chromosome-Scale Genome Assembly and Transcriptome Assembly of Kawakawa Euthynnus affinis; A Tuna-Like Species. PMID:34616435
Interactions Between Bacillus Spp., Pseudomonas Spp. and Cannabis sativa Promote Plant Growth. PMID:34616381
Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups. PMID:34616376
New Estimation of Antibiotic Resistance Genes in Sediment Along the Haihe River and Bohai Bay in China: A Comparison Between Single and Successive DNA Extraction Methods. PMID:34616375
Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization. PMID:34612695
NEIL3-deficiency increases gut permeability and contributes to a pro-atherogenic metabolic phenotype. PMID:34611194
No evidence for colonization of oral bacteria in the distal gut in healthy adults. PMID:34610963
Citrobacter amalonaticus Inhibits the Growth of Citrobacter rodentium in the Gut Lumen. PMID:34609899
In-Situ Biofloc Affects the Core Prokaryotes Community Composition in Gut and Enhances Growth of Nile Tilapia (Oreochromis niloticus). PMID:34609532
Metagenomic Sequencing Reveals that High-Grain Feeding Alters the Composition and Metabolism of Cecal Microbiota and Induces Cecal Mucosal Injury in Sheep. PMID:34609166
Transferable Immunoglobulin A-Coated Odoribacter splanchnicus in Responders to Fecal Microbiota Transplantation for Ulcerative Colitis Limits Colonic Inflammation. PMID:34606847
Metataxonomic analysis of tissue-associated microbiota in grooved carpet-shell (Ruditapes decussatus) and Manila (Ruditapes philippinarum) clams. PMID:34606012
Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics. PMID:34603853
Distinct bacterial community of a solid-state fermented Chinese traditional food huase sufu revealed by high-throughput sequencing. PMID:34603822
The Response of Critical Microbial Taxa to Litter Micro-Nutrients and Macro-Chemistry Determined the Agricultural Soil Priming Intensity After Afforestation. PMID:34603260
Community Structure and Function of Epiphytic Bacteria Associated With Myriophyllum spicatum in Baiyangdian Lake, China. PMID:34603230
Seasonal Dynamics of Epiphytic Microbial Communities on Marine Macrophyte Surfaces. PMID:34603223
Relationships Between the Microbial Composition and the Geochemistry and Mineralogy of the Cobalt-Bearing Legacy Mine Tailings in Northeastern Ontario. PMID:34603222
Next-generation sequencing of the soil nematode community enables the sustainability of banana plantations to be monitored. PMID:34602751
Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris). PMID:34600496
Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. PMID:34599324
Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening. PMID:34599256
Antibiotics and fecal transfaunation differentially affect microbiota recovery, associations, and antibiotic resistance in lemur guts. PMID:34598739
A new phenothiazine derivate is active against Clostridioides difficile and shows low cytotoxicity. PMID:34597343
Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer. PMID:34595105
Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation. PMID:34594317
Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBank. PMID:34594153
Presence of distinctive microbiome in the first-pass meconium of newborn infants. PMID:34593932
Selenium Nanoparticles as an Innovative Selenium Fertilizer Exert Less Disturbance to Soil Microorganisms. PMID:34589080
Changes in microbial community phylogeny and metabolic activity along the water column uncouple at near sediment aphotic layers in fjords. PMID:34588501
Decreased growth of wild soil microbes after 15 years of transplant-induced warming in a montane meadow. PMID:34587352
Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse. PMID:34587178
An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance. PMID:34585964
Subterranean Microbiome Affiliations of Plantain (Musa spp.) Under Diverse Agroecologies of Western and Central Africa. PMID:34585290
Periodic chemical cleaning with urea: disintegration of biofilms and reduction of key biofilm-forming bacteria from reverse osmosis membranes. PMID:34585132
Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments. PMID:34584214
Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota. PMID:34583649
Composition, Succession, and Source Tracking of Microbial Communities throughout the Traditional Production of a Farmstead Cheese. PMID:34581601
Agricultural Management Affects the Active Rhizosphere Bacterial Community Composition and Nitrification. PMID:34581600
Microbes on decomposing litter in streams: entering on the leaf or colonizing in the water? PMID:34580429
Determination of bacterial abundance and communities in the nipple drinking system of cascading cage layer houses. PMID:34580331
Tomato Domestication Affects Potential Functional Molecular Pathways of Root-Associated Soil Bacteria. PMID:34579474
Gut Microbiota Predicts Healthy Late-Life Aging in Male Mice. PMID:34579167
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area. PMID:34579166
Chitin Glucan Shifts Luminal and Mucosal Microbial Communities, Improve Epithelial Barrier and Modulates Cytokine Production In Vitro. PMID:34579126
The Gut Microbiota during a Behavioral Weight Loss Intervention. PMID:34579125
The Effects of Green Tea on Diabetes and Gut Microbiome in db/db Mice: Studies with Tea Extracts vs. Tea Powder. PMID:34579032
Composition of the Gut Microbiome Influences Production of Sulforaphane-Nitrile and Iberin-Nitrile from Glucosinolates in Broccoli Sprouts. PMID:34578891
Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts. PMID:34578862
Pilot Sub-Study of the Effect of Hepatitis C Cure by Glecaprevir/Pibrentasvir on the Gut Microbiome of Patients with Chronic Hepatitis C Genotypes 1 to 6 in the Mythen Study. PMID:34577631
Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater Bivalve. PMID:34576872
Microbiome Analysis of Carious Lesions in Pre-School Children with Early Childhood Caries and Congenital Heart Disease. PMID:34576799
Microbiota Dynamics of Mechanically Separated Organic Fraction of Municipal Solid Waste during Composting. PMID:34576772
The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil. PMID:34576771
Nutrient Enrichment Predominantly Affects Low Diversity Microbiomes in a Marine Trophic Symbiosis between Algal Farming Fish and Corals. PMID:34576770
Bacterial Consumption of T4 Phages. PMID:34576747
The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d'Ivoire. PMID:34576737
Screening of Rhizosphere Bacteria and Nematode Populations Associated with Soybean Roots in the Mpumalanga Highveld of South Africa. PMID:34576709
Phytate and Microbial Suspension Amendments Increased Soybean Growth and Shifted Microbial Community Structure. PMID:34576699
Metagenomic Analysis of Bacterial Communities in Agricultural Soils from Vietnam with Special Attention to Phosphate Solubilizing Bacteria. PMID:34576692
Effect of a Wood-Based Carrier of Trichoderma atroviride SC1 on the Microorganisms of the Soil. PMID:34575789
Diversity and Metabolic Potential of the Terrestrial Mud Volcano Microbial Community with a High Abundance of Archaea Mediating the Anaerobic Oxidation of Methane. PMID:34575103
Evaluating the Inclusion of Cold-Pressed Rapeseed Cake in the Concentrate for Dairy Cows upon Ruminal Biohydrogenation Process, Ruminal Microbial Community and Milk Production and Acceptability. PMID:34573519
Rumen Fermentation, Digestive Enzyme Activity, and Bacteria Composition between Pre-Weaning and Post-Weaning Dairy Calves. PMID:34573493
Saccharomyces Cerevisiae Var Boulardii CNCM I-1079 Reduces Expression of Genes Involved in Inflammatory Response in Porcine Cells Challenged by Enterotoxigenic E. Coli and Influences Bacterial Communities in an In Vitro Model of the Weaning Piglet Colon. PMID:34572682
Lipocalin 2 Deficiency Restrains Aging-Related Reshaping of Gut Microbiota Structure and Metabolism. PMID:34572499
Analysis of the Microbial Intestinal Tract in Broiler Chickens during the Rearing Period. PMID:34571819
Clinical Relevance of the Microbiome in Odontogenic Abscesses. PMID:34571794
Intersex Plays a Role in Microbial Homeostasis in the Brown Planthopper. PMID:34571752
Lactic Acid Bacteria Strains Differently Modulate Gut Microbiota and Metabolic and Immunological Parameters in High-Fat Diet-Fed Mice. PMID:34568404
Genomic Resources to Guide Improvement of the Shea Tree. PMID:34567033
Effects of Dietary Energy Levels on Rumen Fermentation, Gastrointestinal Tract Histology, and Bacterial Community Diversity in Fattening Male Hu Lambs. PMID:34566905
Relative Effects of Dietary Administration of a Competitive Exclusion Culture and a Synbiotic Product, Age and Sampling Site on Intestinal Microbiota Maturation in Broiler Chickens. PMID:34564581
Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice. PMID:34564366
Using transects to disentangle the environmental drivers of plant-microbiome assembly. PMID:34562029
Effects of β-glucan, probiotics, and synbiotics on obesity-associated colitis and hepatic manifestations in C57BL/6J mice. PMID:34561722
Captivity and the co-diversification of great ape microbiomes. PMID:34561432
Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans. PMID:34560884
Chronic consumption of sweeteners in mice and its effect on the immune system and the small intestine microbiota. PMID:34559497
The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya. PMID:34557350
Association of female reproductive tract microbiota with egg production in layer chickens. PMID:34555848
Bio-fertilizer Amendment Alleviates the Replanting Disease under Consecutive Monoculture Regimes by Reshaping Leaf and Root Microbiome. PMID:34554283
The importance of environmental microbes for Drosophila melanogaster during seasonal macronutrient variability. PMID:34552121
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network. PMID:34550967
One-Year In Situ Incubation of Pyrite at the Deep Seafloor and Its Microbiological and Biogeochemical Characterizations. PMID:34550782
Microbiota-Macroalgal Relationships at a Hawaiian Intertidal Bench Are Influenced by Macroalgal Phyla and Associated Thallus Complexity. PMID:34550007
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane. PMID:34549287
DNA metabarcoding reveals the dietary composition in the endangered black-faced spoonbill. PMID:34548502
Decomposition of peatland DOC affected by root exudates is driven by specific r and K strategic bacterial taxa. PMID:34548501
Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants. PMID:34548108
Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica. PMID:34541621
Compositional Shift of Bacterial, Archaeal, and Fungal Communities Is Dependent on Trophic Lifestyles in Rice Paddy Soil. PMID:34539610
Resistance and Vulnerability of Honeybee (Apis mellifera) Gut Bacteria to Commonly Used Pesticides. PMID:34539609
Gut Microbiota Associated With Different Sea Lamprey (Petromyzon marinus) Life Stages. PMID:34539605
Monitoring of seven industrial anaerobic digesters supplied with biochar. PMID:34538267
Shoot and root insect herbivory change the plant rhizosphere microbiome and affects cabbage-insect interactions through plant-soil feedback. PMID:34537968
The digestive and reproductive tract microbiotas and their association with body weight in laying hens. PMID:34534851
The gut microbiome in microscopic polyangiitis with kidney involvement: common and unique alterations, clinical association and values for disease diagnosis and outcome prediction. PMID:34532423
The effects of smoking and drinking on the oral and esophageal microbiota of healthy people. PMID:34532381
Exploring Changes in the Host Gut Microbiota During a Controlled Human Infection Model for Campylobacter jejuni. PMID:34532299
RNA-Based Analysis Reveals High Diversity of Plant-Associated Active Fungi in the Atmosphere. PMID:34531834
Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems. PMID:34531395
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. PMID:34531387
Commensal microbe-derived acetate suppresses NAFLD/NASH development via hepatic FFAR2 signalling in mice. PMID:34530928
Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium. PMID:34530674
Landscapes and bacterial signatures of mucosa-associated intestinal microbiota in Chilean and Spanish patients with inflammatory bowel disease. PMID:34527721
From Biogas and Hydrogen to Microbial Protein Through Co-Cultivation of Methane and Hydrogen Oxidizing Bacteria. PMID:34527661
Microbial community of soda Lake Van as obtained from direct and enriched water, sediment and fish samples. PMID:34526632
Disease-induced changes in plant microbiome assembly and functional adaptation. PMID:34526096
Gut microbiota mediated the therapeutic efficacies and the side effects of prednisone in the treatment of MRL/lpr mice. PMID:34521450
Deciphering the low abundance microbiota of presumed aseptic hip and knee implants. PMID:34520499
Submerged macrophytes recruit unique microbial communities and drive functional zonation in an aquatic system. PMID:34519857
Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing. PMID:34519534
Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities. PMID:34519530
Metagenomics Unveils Posidonia oceanica "Banquettes" as a Potential Source of Novel Bioactive Compounds and Carbohydrate Active Enzymes (CAZymes). PMID:34519521
Bacterial diversity dynamics in microbial consortia selected for lignin utilization. PMID:34516585
Dermal Exposure to the Immunomodulatory Antimicrobial Chemical Triclosan Alters the Skin Barrier Integrity and Microbiome in Mice. PMID:34515797
Oral Phenotype and Salivary Microbiome of Individuals With Papillon-Lefèvre Syndrome. PMID:34513733
Distribution of a Sulfolane-Metabolizing Rhodoferax sp. Throughout a Contaminated Subarctic Aquifer and Two Groundwater Treatment Systems. PMID:34512592
Microbial Diversity and Non-volatile Metabolites Profile of Low-Temperature Sausage Stored at Room Temperature. PMID:34512589
Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics. PMID:34512586
Comparison of the Bulk and Rhizosphere Soil Prokaryotic Communities Between Wild and Reintroduced Manglietiastrum sinicum Plants, a Threatened Species with Extremely Small Populations. PMID:34510225
Geography-dependent symbiont communities in two oligophagous aphid species. PMID:34506623
Fly-over phylogeny across invertebrate to vertebrate: The giant panda and insects share a highly similar gut microbiota. PMID:34504662
Dietary Exposure of Pacific Oyster (Crassostrea gigas) Larvae to Compromised Microalgae Results in Impaired Fitness and Microbiome Shift. PMID:34504478
The gastric microbiota in patients with Crohn's disease; a preliminary study. PMID:34504159
Saliva-derived microcosm biofilms grown on different oral surfaces in vitro. PMID:34504090
Increase in Akkermansiaceae in Gut Microbiota of Prostate Cancer-Bearing Mice. PMID:34502535
Contamination of Hospital Surfaces with Bacterial Pathogens under the Current COVID-19 Outbreak. PMID:34501634
Succession and potential role of bacterial communities during Pleurotus ostreatus production. PMID:34498665
Screening of Key Fungal Strains in the Fermentation Process of the Chinese Medicinal Preparation "Lianzhifan Solution" Based on Metabolic Profiling and High-Throughput Sequencing Technology. PMID:34497599
The Effect of Ryegrass Silage Feeding on Equine Fecal Microbiota and Blood Metabolite Profile. PMID:34497595
Environmental factors shaping bacterial, archaeal and fungal community structure in hydrothermal sediments of Guaymas Basin, Gulf of California. PMID:34495995
Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System. PMID:34495690
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms. PMID:34493810
Porphyromonas spp., Fusobacterium spp., and Bacteroides spp. dominate microbiota in the course of macropod progressive periodontal disease. PMID:34493783
DNase Treatment Improves Viral Enrichment in Agricultural Soil Viromes. PMID:34491084
Low Crude Protein Diet Affects the Intestinal Microbiome and Metabolome Differently in Barrows and Gilts. PMID:34489906
Genomic Variation Influences Methanothermococcus Fitness in Marine Hydrothermal Systems. PMID:34489903
Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals. PMID:34489882
Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community. PMID:34489463
Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota. PMID:34489402
Diversity and flexibility of algal symbiont community in globally distributed larger benthic foraminifera of the genus Amphistegina. PMID:34488648
Soil microbial community and abiotic soil properties influence Zn and Cd hyperaccumulation differently in Arabidopsis halleri. PMID:34487902
Life in the Wheat Litter: Effects of Future Climate on Microbiome and Function During the Early Phase of Decomposition. PMID:34487212
A chromosome-level genome of Antechinus flavipes provides a reference for an Australian marsupial genus with male death after mating. PMID:34486812
A potential microbiological approach to the evaluation of earthquake-induced soil liquefaction. PMID:34485866
Amplicon metabarcoding data of prokaryotes and eukaryotes present in 'Kalamata' table olives packaged under modified atmosphere. PMID:34485644
Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage. PMID:34480872
Gut Microbiota Dysbiosis as One Cause of Osteoporosis by Impairing Intestinal Barrier Function. PMID:34480200
Free threonine in human breast milk is related to infant intestinal microbiota composition. PMID:34477981
Environmental fluctuations reshape an unexpected diversity-disturbance relationship in a microbial community. PMID:34477107
Biosorption of Copper in Swine Manure Using Aspergillus and Yeast: Characterization and Its Microbial Diversity Study. PMID:34475858
Integrative analysis of the gut microbiome and metabolome in a rat model with stress induced irritable bowel syndrome. PMID:34475489
Disruption of the oral microbiota is associated with a higher risk of relapse after allogeneic hematopoietic stem cell transplantation. PMID:34475459
Cydrasil 3, a curated 16S rRNA gene reference package and web app for cyanobacterial phylogenetic placement. PMID:34475414
High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts. PMID:34473015
Delivery mode and perinatal antibiotics influence the predicted metabolic pathways of the gut microbiome. PMID:34471207
Effects of Recreational Boating on Microbial and Meiofauna Diversity in Coastal Shallow Ecosystems of the Baltic Sea. PMID:34468165
Linkage of community composition and function over short response time in anaerobic digestion systems with food fermentation wastewater. PMID:34466784
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities. PMID:34465363
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota. PMID:34460815
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii). PMID:34459554
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formica exsecta (Hymenoptera: Formicidae). PMID:34459553
Patterns of protist distribution and diversification in alpine lakes across Europe. PMID:34459549
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes. PMID:34459547
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance. PMID:34459542
Application of culture, PCR, and PacBio sequencing for determination of microbial composition of milk from subclinical mastitis dairy cows of smallholder farms. PMID:34458582
Insights into epidemiologic assessments of the microbiome and challenges in identifying microbiome relationships with adverse pregnancy outcomes. PMID:34458070
Temporal Changes in the Function of Bacterial Assemblages Associated With Decomposing Earthworms. PMID:34456883
Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes. PMID:34454634
Microbial composition differs between production systems and is associated with growth performance and carcass quality in pigs. PMID:34454609
Neonatal Exposure to BPA, BDE-99, and PCB Produces Persistent Changes in Hepatic Transcriptome Associated With Gut Dysbiosis in Adult Mouse Livers. PMID:34453844
Environmental vulnerability of the global ocean epipelagic plankton community interactome. PMID:34452910
Comparison of Chicken Cecal Microbiota after Metaphylactic Treatment or Following Administration of Feed Additives in a Broiler Farm with Enterococcal Spondylitis History. PMID:34451532
Gut Microbiota in Military International Travelers with Doxycycline Malaria Prophylaxis: Towards the Risk of a Simpson Paradox in the Human Microbiome Field. PMID:34451527
A Pilot Study on the Microbiome of Amblyomma hebraeum Tick Stages Infected and Non-Infected with Rickettsia africae. PMID:34451405
Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers. PMID:34447921
Safety Assessment of Microbicide 2P23 on the Rectal and Vaginal Microbiota and Its Antiviral Activity on HIV Infection. PMID:34447373
Smectite as a Preventive Oral Treatment to Reduce Clinical Symptoms of DSS Induced Colitis in Balb/c Mice. PMID:34445403
Bifidobacterium animalis subsp. lactis BB-12 Protects against Antibiotic-Induced Functional and Compositional Changes in Human Fecal Microbiome. PMID:34444974
Infants' First Solid Foods: Impact on Gut Microbiota Development in Two Intercontinental Cohorts. PMID:34444798
The Raw Milk Microbiota from Semi-Subsistence Farms Characteristics by NGS Analysis Method. PMID:34443615
Effects of Age, Diet CP, NDF, EE, and Starch on the Rumen Bacteria Community and Function in Dairy Cattle. PMID:34442867
Different Responses of Microbiota across Intestinal Tract to Enterococcus faecium HDRsEf1 and Their Correlation with Inflammation in Weaned Piglets. PMID:34442847
Analysis of Human Gut Microbiota Composition Associated to the Presence of Commensal and Pathogen Microorganisms in Côte d'Ivoire. PMID:34442844
The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota. PMID:34442834
Microbial Diversity Profiling of Gut Microbiota of Macropus giganteus Using Three Hypervariable Regions of the Bacterial 16S rRNA. PMID:34442800
Cross-Shore and Depth Zonations in Bacterial Diversity Are Linked to Age and Source of Dissolved Organic Matter across the Intertidal Area of a Sandy Beach. PMID:34442799
Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts. PMID:34442789
Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing. PMID:34442751
The Impact of the Inoculation of Phosphate-Solubilizing Bacteria Pantoea agglomerans on Phosphorus Availability and Bacterial Community Dynamics of a Semi-Arid Soil. PMID:34442740
Culture-Independent and Culture-Dependent Characterization of the Black Soldier Fly Gut Microbiome Reveals a Large Proportion of Culturable Bacteria with Potential for Industrial Applications. PMID:34442721
Microbial Communities Present in Hydrothermal Sediments from Deception Island, Antarctica. PMID:34442712
Does Organic Farming Increase Raspberry Quality, Aroma and Beneficial Bacterial Biodiversity? PMID:34442697
Chironomus ramosus Larval Microbiome Composition Provides Evidence for the Presence of Detoxifying Enzymes. PMID:34442650
Native Yeasts and Lactic Acid Bacteria Isolated from Spontaneous Fermentation of Seven Grape Cultivars from the Maule Region (Chile). PMID:34441515
Next-Generation Sequencing Analysis of Root Canal Microbiota Associated with a Severe Endodontic-Periodontal Lesion. PMID:34441394
Spatial and Species Variations of Bacterial Community Structure and Putative Function in Seagrass Rhizosphere Sediment. PMID:34440596
Identification of Biomolecules Involved in the Adaptation to the Environment of Cold-Loving Microorganisms and Metabolic Pathways for Their Production. PMID:34439820
Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota Profile. PMID:34439704
Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes versicolor). PMID:34438918
Bacterial Community Characteristics in the Gastrointestinal Tract of Yak (Bos grunniens) Fully Grazed on Pasture of the Qinghai-Tibetan Plateau of China. PMID:34438701
Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells. PMID:34437423
Species Identity, Life History, and Geographic Distance Influence Gut Bacterial Communities in Lab-Reared and European Field-Collected Culicoides Biting midges. PMID:34436640
Potential oxygen consumption and community composition of sediment bacteria in a seasonally hypoxic enclosed bay. PMID:34434647
Pearl Oyster Bacterial Community Structure Is Governed by Location and Tissue-Type, but Vibrio Species Are Shared Among Oyster Tissues. PMID:34434182
Effect of Dietary Protein Levels on Dynamic Changes and Interactions of Ruminal Microbiota and Metabolites in Yaks on the Qinghai-Tibetan Plateau. PMID:34434174
Benchmarking laboratory processes to characterise low-biomass respiratory microbiota. PMID:34433845
Acute SARS-CoV-2 infection is associated with an increased abundance of bacterial pathogens, including Pseudomonas aeruginosa in the nose. PMID:34433082
The effect of probiotic supplementation on the gut microbiota of preterm infants. PMID:34431764
Assessing age, breeding stage, and mating activity as drivers of variation in the reproductive microbiome of female tree swallows. PMID:34429928
Inventory of the benthic eukaryotic diversity in the oldest European lake. PMID:34429912
Metabarcoding options to study eukaryotic endoparasites of birds. PMID:34429884
Characterizing the Uncultivated Microbial Minority: towards Understanding the Roles of the Rare Biosphere in Microbial Communities. PMID:34427533
Airway microbial communities, smoking and asthma in a general population sample. PMID:34425308
Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice. PMID:34421867
Disentangling the Possible Drivers of Indri indri Microbiome: A Threatened Lemur Species of Madagascar. PMID:34421838
Multi-Omics Analysis Reveals a Dependent Relationship Between Rumen Bacteria and Diet of Grass- and Grain-Fed Yaks. PMID:34421832
A Holistic Assessment of Polyethylene Fiber Ingestion in Larval and Juvenile Japanese Medaka Fish. PMID:34421633
Impact of operational conditions on methane yield and microbial community composition during biological methanation in in situ and hybrid reactor systems. PMID:34416924
Mixed Acid Fermentation of Carbohydrate-Rich Dairy Manure Hydrolysate. PMID:34414173
Metagenomic Survey of the Highly Polyphagous Anastrepha ludens Developing in Ancestral and Exotic Hosts Reveals the Lack of a Stable Microbiota in Larvae and the Strong Influence of Metamorphosis on Adult Gut Microbiota. PMID:34413837
Resource-diversity relationships in bacterial communities reflect the network structure of microbial metabolism. PMID:34413507
Niche partitioning by photosynthetic plankton as a driver of CO2-fixation across the oligotrophic South Pacific Subtropical Ocean. PMID:34413475
Irrigation has a higher impact on soil bacterial abundance, diversity and composition than nitrogen fertilization. PMID:34413369
Nodal immune flare mimics nodal disease progression following neoadjuvant immune checkpoint inhibitors in non-small cell lung cancer. PMID:34413300
Omouma: a prospective mother and child cohort aiming to identify early biomarkers of pregnancy complications in women living in Qatar. PMID:34412611
Gut microbiome is associated with multiple sclerosis activity in children. PMID:34409759
Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies. PMID:34405249
North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches. PMID:34404489
The ultra-structural, metabolomic and metagenomic characterisation of the sudanese smokeless tobacco 'Toombak'. PMID:34401360
Characterization of the virome associated with Haemagogus mosquitoes in Trinidad, West Indies. PMID:34400676
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship. PMID:34399620
The rice foot rot pathogen Dickeya zeae alters the in-field plant microbiome. PMID:34398481
Fermented and Germinated Processing Improved the Protective Effects of Foxtail Millet Whole Grain Against Dextran Sulfate Sodium-Induced Acute Ulcerative Colitis and Gut Microbiota Dysbiosis in C57BL/6 Mice. PMID:34395495
Bacterial Composition and Metabolomics of Dental Plaque From Adolescents. PMID:34395316
ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences. PMID:34395092
Exploration of the Characteristics of Intestinal Microbiota and Metabolomics in Different Rat Models of Mongolian Medicine. PMID:34394382
Differences in Gut Microbiome Composition Between Sympatric Wild and Allopatric Laboratory Populations of Omnivorous Cockroaches. PMID:34394050
Production, Storage Stability, and Susceptibility Testing of Reuterin and Its Impact on the Murine Fecal Microbiome and Volatile Organic Compound Profile. PMID:34394042
Temporal Gene Expression Signature of Plasma Extracellular Vesicles-MicroRNAs from Post-Smolt Coho Salmon Challenged with Piscirickettsia salmonis. PMID:34390423
Phylosymbiotic Structures of the Microbiota in Mollitrichosiphum tenuicorpus (Hemiptera: Aphididae: Greenideinae). PMID:34387702
Cultivation of Dominant Freshwater Bacterioplankton Lineages Using a High-Throughput Dilution-to-Extinction Culturing Approach Over a 1-Year Period. PMID:34385989
Identification and Genomic Characterization of Two Previously Unknown Magnetotactic Nitrospirae. PMID:34385986
Microbial Composition in the Duodenum and Ileum of Yellow Broilers With High and Low Feed Efficiency. PMID:34385985
Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation. PMID:34384346
Dereplication of antimicrobial biosurfactants from marine bacteria using molecular networking. PMID:34381106
Lactobacillus fermentum PS150 promotes non-rapid eye movement sleep in the first night effect of mice. PMID:34381098
Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study. PMID:34380550
Truffle Microbiome Is Driven by Fruit Body Compartmentalization Rather than Soils Conditioned by Different Host Trees. PMID:34378984
Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota. PMID:34378979
Use of Recombinant Endolysin to Improve Accuracy of Group B Streptococcus Tests. PMID:34378963
Unique Gut Microbiome in HIV Patients on Antiretroviral Therapy (ART) Suggests Association with Chronic Inflammation. PMID:34378948
CONSULT: accurate contamination removal using locality-sensitive hashing. PMID:34377979
Microbiota changes with fermented kimchi contributed to either the amelioration or rejuvenation of Helicobacter pylori-associated chronic atrophic gastritis. PMID:34376919
Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study. PMID:34376634
Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle. PMID:34376230
Characteristics of gut microbiota in people with obesity. PMID:34375351
Gastrointestinal Digestion of a Grape Pomace Extract: Impact on Intestinal Barrier Permeability and Interaction with Gut Microbiome. PMID:34371979
Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines. PMID:34367102
The Mechanism Underlying of Long-Term Stable Indigo Reduction State in Indigo Fermentation Using Sukumo (Composted Polygonum tinctorium Leaves). PMID:34367099
Comparison of Bacterial Community of Healthy and Erwinia amylovora Infected Apples. PMID:34365751
Early life stress causes persistent impacts on the microbiome of Atlantic salmon. PMID:34365156
The Light-to-Nutrient Ratio in Alpine Lakes: Different Scenarios of Bacterial Nutrient Limitation and Community Structure in Lakes Above and Below the Treeline. PMID:34363516
Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov. PMID:34361930
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms. PMID:34361929
Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA. PMID:34361905
Effects of Dietary Supplementation with Protected Sodium Butyrate on Gut Microbiota in Growing-Finishing Pigs. PMID:34359264
A Standard Scale to Measure Equine Keeper Status and the Effect of Metabolic Tendency on Gut Microbiome Structure. PMID:34359102
Accessing Dietary Effects on the Rumen Microbiome: Different Sequencing Methods Tell Different Stories. PMID:34357930
Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza? PMID:34356929
Multiomic Approach to Analyze Infant Gut Microbiota: Experimental and Analytical Method Optimization. PMID:34356622
Using Plate-Wash PCR and High-Throughput Sequencing to Measure Cultivated Diversity for Natural Product Discovery Efforts. PMID:34354680
An extended reconstruction of human gut microbiota metabolism of dietary compounds. PMID:34354065
Fasting increases microbiome-based colonization resistance and reduces host inflammatory responses during an enteric bacterial infection. PMID:34352037
Distribution of ETBE-degrading microorganisms and functional capability in groundwater, and implications for characterising aquifer ETBE biodegradation potential. PMID:34350568
The Effect of Lactobacillus plantarum BW2013 on The Gut Microbiota in Mice Analyzed by 16S rRNA Amplicon Sequencing. PMID:34349813
Comparative Analysis of the Microbiota Between Rumen and Duodenum of Twin Lambs Based on Diets of Ceratoides or Alfalfa. PMID:34349809
Pathogen Challenge and Dietary Shift Alter Microbiota Composition and Activity in a Mucin-Associated in vitro Model of the Piglet Colon (MPigut-IVM) Simulating Weaning Transition. PMID:34349744
Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database. PMID:34349739
Direct Evidence for Deterministic Assembly of Bacterial Communities in Full-Scale Municipal Wastewater Treatment Facilities. PMID:34347524
Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost Floodplain. PMID:34347514
Periphytic Microbial Response to Environmental Phosphate (P) Bioavailability and Its Relevance to P Management in Paddy Fields. PMID:34347511
Green Fluorescent Protein-Tagged Bacillus axarquiensis TUBP1 Reduced Cotton Verticillium Wilt Incidence by Altering Soil Rhizosphere Microbial Communities. PMID:34347145
Can We Estimate Functionality of Soil Microbial Communities from Structure-Derived Predictions? A Reality Test in Agricultural Soils. PMID:34346741
Spatially resolved correlative microscopy and microbial identification reveal dynamic depth- and mineral-dependent anabolic activity in salt marsh sediment. PMID:34346142
Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood. PMID:34344895
Specific inhibition of Streptococcus bovis by endolysin LyJH307 supplementation shifts the rumen microbiota and metabolic pathways related to carbohydrate metabolism. PMID:34344466
Pilot Trial of Vitamin D3 and Calcifediol in Healthy Vitamin D Deficient Adults: Does It Change the Fecal Microbiome? PMID:34343292
Roux-en-Y Gastric Bypass Improved Insulin Resistance via Alteration of the Human Gut Microbiome and Alleviation of Endotoxemia. PMID:34337024
Oral Vaccination Reduces the Effects of Lawsonia intracellularis Challenge on the Swine Small and Large Intestine Microbiome. PMID:34336979
Composition of the Fecal Microbiota of Piglets at Various Growth Stages. PMID:34336969
Diverse Profile of Fermentation Byproducts From Thin Stillage. PMID:34336807
An Exploratory Study for the Association of Gut Microbiome with Efficacy of Immune Checkpoint Inhibitor in Patients with Hepatocellular Carcinoma. PMID:34336726
Meta-Analysis of Bovine Digital Dermatitis Microbiota Reveals Distinct Microbial Community Structures Associated With Lesions. PMID:34336713
Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach. PMID:34335529
Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes. PMID:34335499
Evaluation of Three Prokaryote Primers for Identification of Prokaryote Community Structure and Their Abode Preference in Three Distinct Wetland Ecosystems. PMID:34335488
Microbial Diversity and Activity During the Biodegradation in Seawater of Various Substitutes to Conventional Plastic Cotton Swab Sticks. PMID:34335485
Effects of dietary macronutrient profile on apparent total tract macronutrient digestibility and fecal microbiota, fermentative metabolites, and bile acids of female dogs after spay surgery. PMID:34333604
Temporal Variation in the Microbiome of Tropical and Temperate Octocorals. PMID:34331071
Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge. PMID:34330993
Lytic archaeal viruses infect abundant primary producers in Earth's crust. PMID:34330907
Tomato Cultivars With Variable Tolerances to Water Deficit Differentially Modulate the Composition and Interaction Patterns of Their Rhizosphere Microbial Communities. PMID:34326856
A comprehensive approach for microbiota and health monitoring in mouse colonies using metagenomic shotgun sequencing. PMID:34325744
Microbiome of the wasp Vespula pensylvanica in native and invasive populations, and associations with Moku virus. PMID:34324610
The role of CDHR3 in susceptibility to otitis media. PMID:34322716
Randomized, Placebo-Controlled Trial of Rifaximin Therapy for Lowering Gut-Derived Cardiovascular Toxins and Inflammation in CKD. PMID:34322673
Commercial Organic Versus Conventional Whole Rye and Wheat Flours for Making Sourdough Bread: Safety, Nutritional, and Sensory Implications. PMID:34322100
Nutrient-Limited Enrichments of Nitrifiers From Soil Yield Consortia of Nitrosocosmicus-Affiliated AOA and Nitrospira-Affiliated NOB. PMID:34322099
Unraveling negative biotic interactions determining soil microbial community assembly and functioning. PMID:34321619
Microbial drivers of methane emissions from unrestored industrial salt ponds. PMID:34321618
Sequence-Specific Capture of Oligonucleotide Probes (SCOPE): a Simple and Rapid Microbial rRNA Quantification Method Using a Molecular Weight Cutoff Membrane. PMID:34319794
Crop rotation reduces the frequency of anaerobic soil bacteria in Red Latosol of Brazil. PMID:34319574
The bifidobacterial distribution in the microbiome of captive primates reflects parvorder and feed specialization of the host. PMID:34315970
Functional enrichment of gut microbiome by early supplementation of Bacillus based probiotic in cage free hens: a field study. PMID:34315535
Helminth Microbiota Profiling Using Bacterial 16S rRNA Gene Amplicon Sequencing: From Sampling to Sequence Data Mining. PMID:34313994
Dysbiosis of the Urinary Bladder Microbiome in Cats with Chronic Kidney Disease. PMID:34313465
Identification and Quantification of Bovine Digital Dermatitis-Associated Microbiota across Lesion Stages in Feedlot Beef Cattle. PMID:34313462
Ecological Adaptation and Succession of Human Fecal Microbial Communities in an Automated In Vitro Fermentation System. PMID:34313459
Novel lichen-dominated hypolithic communities in the Namib Desert. PMID:34312709
Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. PMID:34312531
Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks. PMID:34312482
Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef. PMID:34312399
Variations in Microbial Diversity and Metabolite Profiles of Female Landrace Finishing Pigs With Distinct Feed Efficiency. PMID:34307537
The Gut Viral Metagenome Analysis of Domestic Dogs Captures Snapshot of Viral Diversity and Potential Risk of Coronavirus. PMID:34307533
Feeding Pre-weaned Calves With Waste Milk Containing Antibiotic Residues Is Related to a Higher Incidence of Diarrhea and Alterations in the Fecal Microbiota. PMID:34307516
Draft Genome of the Mirrorwing Flyingfish (Hirundichthys speculiger). PMID:34306036
Microbial Profiles of Retail Pacific Oysters (Crassostrea gigas) From Guangdong Province, China. PMID:34305851
Effects of Delayed Harvest and Additives on Fermentation Quality and Bacterial Community of Corn Stalk Silage. PMID:34305847
The Effect of Radiation on the Gut Bacteriome of Aedes albopictus. PMID:34305838
Antimetastatic Effects of Ganoderma lucidum Polysaccharide Peptide on B16-F10-luc-G5 Melanoma Mice With Sleep Fragmentation. PMID:34305583
Local intestinal microbiota response and systemic effects of feeding black soldier fly larvae to replace soybean meal in growing pigs. PMID:34302029
Assessment of Biolog EcoplateTM method for functional metabolic diversity of aerotolerant pig fecal microbiota. PMID:34296337
Nutritional and ecological perspectives of the interrelationships between diet and the gut microbiome in multiple sclerosis: Insights from marmosets. PMID:34296070
Assessing the Diversity and Metabolic Potential of Psychrotolerant Arsenic-Metabolizing Microorganisms From a Subarctic Peatland Used for Treatment of Mining-Affected Waters by Culture-Dependent and -Independent Techniques. PMID:34295311
Prolonged drought imparts lasting compositional changes to the rice root microbiome. PMID:34294907
Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef. PMID:34294880
Comparative analysis of the bronchoalveolar microbiome in Portuguese patients with different chronic lung disorders. PMID:34294826
Links between fecal microbiota and the response to vaccination against influenza A virus in pigs. PMID:34294732
Skin Microbiota of the Captive Giant Panda (Ailuropoda Melanoleuca) and the Distribution of Opportunistic Skin Disease-Associated Bacteria in Different Seasons. PMID:34291099
Spatial and Temporal Variations in Pigment and Species Compositions of Snow Algae on Mt. Tateyama in Toyama Prefecture, Japan. PMID:34290725
Soil acidification mediates changes in soil bacterial community assembly processes in response to agricultural intensification. PMID:34289203
Exploration of Social Spreading Reveals That This Behavior Is Prevalent among Pedobacter and Pseudomonas fluorescens Isolates and That There Are Variations in the Induction of the Phenotype. PMID:34288708
A comprehensive synthesis unveils the mysteries of phosphate-solubilizing microbes. PMID:34288351
Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters. PMID:34287003
Seasonal niche differentiation among closely related marine bacteria. PMID:34285363
Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea. PMID:34285362
Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources. PMID:34283824
Linking plasmid-based beta-lactamases to their bacterial hosts using single-cell fusion PCR. PMID:34282723
Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease. PMID:34281401
Responses of Low-Cost Input Combinations on the Microbial Structure of the Maize Rhizosphere for Greenhouse Gas Mitigation and Plant Biomass Production. PMID:34276734
Towards Bioleaching of a Vanadium Containing Magnetite for Metal Recovery. PMID:34276626
Distinct Functions and Assembly Mechanisms of Soil Abundant and Rare Bacterial Taxa Under Increasing Pyrene Stresses. PMID:34276621
Selenium Yeast Dietary Supplement Affects Rumen Bacterial Population Dynamics and Fermentation Parameters of Tibetan Sheep (Ovis aries) in Alpine Meadow. PMID:34276597
Coffee Consumption Modulates Amoxicillin-Induced Dysbiosis in the Murine Gut Microbiome. PMID:34276581
Astragalus Polysaccharides Ameliorate Diet-Induced Gallstone Formation by Modulating Synthesis of Bile Acids and the Gut Microbiota. PMID:34276384
Dynamics in Bacterial Community Affected by Mesoscale Eddies in the Northern Slope of the South China Sea. PMID:34272992
Diet-induced microbiome shifts of sympatric overwintering birds. PMID:34272578
Simple mapping-based quantification of a mock microbial community using total RNA-seq data. PMID:34270567
Assessing the Concordance Between Urogenital and Vaginal Microbiota: Can Urine Specimens Be Used as a Proxy for Vaginal Samples? PMID:34268137
Exploring the Potential of Micrococcus luteus Culture Supernatant With Resuscitation-Promoting Factor for Enhancing the Culturability of Soil Bacteria. PMID:34267737
Tree-aggregated predictive modeling of microbiome data. PMID:34267244
Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents. PMID:34266956
Abundance-Occupancy Relationships Along Taxonomic Ranks Reveal a Consistency of Niche Differentiation in Marine Bacterioplankton With Distinct Lifestyles. PMID:34262550
Identification of Microbiological Activities in Wet Flue Gas Desulfurization Systems. PMID:34262541
Assessing the relationship between the rumen microbiota and feed efficiency in Nellore steers. PMID:34261531
Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production. PMID:34261525
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes. PMID:34260698
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition. PMID:34259562
Resistance to permethrin alters the gut microbiota of Aedes aegypti. PMID:34257327
Revealing the full biosphere structure and versatile metabolic functions in the deepest ocean sediment of the Challenger Deep. PMID:34256809
Consecutive soybean (Glycine max) planting and covering improve acidified tea garden soil. PMID:34255775
Multiomic analysis of Schistosoma mansoni reveals unique expression profiles in cercarial heads and tails. PMID:34253841
Host species shape the community structure of culturable endophytes in fruits of wild berry species (Vaccinium myrtillus L., Empetrum nigrum L. and Vaccinium vitis-idaea L.). PMID:34251452
Pulmonary and intestinal microbiota dynamics during Gram-negative pneumonia-derived sepsis. PMID:34250564
Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment. PMID:34249966
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms. PMID:34249520
Low Global Diversity of Candidatus Microthrix, a Troublesome Filamentous Organism in Full-Scale WWTPs. PMID:34248915
Variation in Soil Microbial Communities Along an Elevational Gradient in Alpine Meadows of the Qilian Mountains, China. PMID:34248904
Antidiabetic Function of Lactobacillus fermentum MF423-Fermented Rice Bran and Its Effect on Gut Microbiota Structure in Type 2 Diabetic Mice. PMID:34248898
Gut Microbiota Signature Among Asian Post-gestational Diabetes Women Linked to Macronutrient Intakes and Metabolic Phenotypes. PMID:34248897
Seasonal Dynamics Are the Major Driver of Microbial Diversity and Composition in Intensive Freshwater Aquaculture. PMID:34248892
Shaping of the Present-Day Deep Biosphere at Chicxulub by the Impact Catastrophe That Ended the Cretaceous. PMID:34248877
Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake. PMID:34248867
Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae. PMID:34248866
Unravelling the Importance of Diazotrophy in Corals - Combined Assessment of Nitrogen Assimilation, Diazotrophic Community and Natural Stable Isotope Signatures. PMID:34248863
Different Active Microbial Communities in Two Contrasted Subantarctic Fjords. PMID:34248861
Monitoring Infection and Antibiotic Treatment in the Skin Microbiota of Farmed European Seabass (Dicentrarchus Labrax) Fingerlings. PMID:34245329
Gut microbiome heritability is nearly universal but environmentally contingent. PMID:34244407
Evaluating extraction methods to study canine urine microbiota. PMID:34242284
Structure and driving factors of the soil microbial community associated with Alhagi sparsifolia in an arid desert. PMID:34242272
Tracking bacterial DNA patterns in septic progression using 16s rRNA gene amplicon sequencing analysis. PMID:34239678
Strenuous Physical Training, Physical Fitness, Body Composition and Bacteroides to Prevotella Ratio in the Gut of Elderly Athletes. PMID:34239449
Meta-Ribosomalomics: RNA Sequencing Is an Unbiased Method for Parasite Detection of Different Sample Types. PMID:34234748
The association between serum microbial DNA composition and symptoms of depression and anxiety in mood disorders. PMID:34234173
Translocation of vaginal microbiota is involved in impairment and protection of uterine health. PMID:34234149
Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System (Manatee Springs, Florida). PMID:34232732
What's under the Christmas Tree? A Soil Sulfur Amendment Lowers Soil pH and Alters Fir Tree Rhizosphere Bacterial and Eukaryotic Communities, Their Interactions, and Functional Traits. PMID:34232064
Gut microbiota signature of pathogen-dependent dysbiosis in viral gastroenteritis. PMID:34230563
Bacteroides uniformis CECT 7771 Modulates the Brain Reward Response to Reduce Binge Eating and Anxiety-Like Behavior in Rat. PMID:34228269
Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes. PMID:34227831
Microaerobic Lifestyle at Nanomolar O2 Concentrations Mediated by Low-Affinity Terminal Oxidases in Abundant Soil Bacteria. PMID:34227829
An engineered genetic circuit for lactose intolerance alleviation. PMID:34225711
Poor Competitiveness of Bradyrhizobium in Pigeon Pea Root Colonization in Indian Soils. PMID:34225488
Spatial Characteristics of Colonic Mucosa-Associated Gut Microbiota in Humans. PMID:34223947
Dental Biofilm Microbiota Dysbiosis Is Associated With the Risk of Acute Graft-Versus-Host Disease After Allogeneic Hematopoietic Stem Cell Transplantation. PMID:34220852
Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition. PMID:34220772
Microbial Communities on Plastic Polymers in the Mediterranean Sea. PMID:34220756
Larval Diet Abundance Influences Size and Composition of the Midgut Microbiota of Aedes aegypti Mosquitoes. PMID:34220739
Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions. PMID:34218251
De novo transcriptome analysis of white teak (Gmelina arborea Roxb) wood reveals critical genes involved in xylem development and secondary metabolism. PMID:34215181
Composition and diversity of gut microbiota in Pomacea canaliculata in sexes and between developmental stages. PMID:34210255
Sasso Pisano Geothermal Field Environment Harbours Diverse Ktedonobacteria Representatives and Illustrates Habitat-Specific Adaptations. PMID:34209727
Engraftment of Bacteria after Fecal Microbiota Transplantation Is Dependent on Both Frequency of Dosing and Duration of Preparative Antibiotic Regimen. PMID:34209573
Extremophiles in Soil Communities of Former Copper Mining Sites of the East Harz Region (Germany) Reflected by Re-Analyzed 16S rRNA Data. PMID:34209398
Microbiome of Odontogenic Abscesses. PMID:34208451
Integrative Analyses of Circulating Small RNAs and Kidney Graft Transcriptome in Transplant Glomerulopathy. PMID:34207555
Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer. PMID:34207399
Identification of Key Metabolic Pathways and Biomarkers Underlying Flowering Time of Guar (Cyamopsis tetragonoloba (L.) Taub.) via Integrated Transcriptome-Metabolome Analysis. PMID:34206279
Longitudinal Changes in Diet Cause Repeatable and Largely Reversible Shifts in Gut Microbial Communities of Laboratory Mice and Are Observed across Segments of the Entire Intestinal Tract. PMID:34205981
Aquatic Ecosystems of the Anthropocene: Limnology and Microbial Ecology of Mine Pit Lakes. PMID:34204924
Structural and Functional Impacts of Microbiota on Pyropia yezoensis and Surrounding Seawater in Cultivation Farms along Coastal Areas of the Yellow Sea. PMID:34204837
The Equine Faecal Microbiota of Healthy Horses and Ponies in The Netherlands: Impact of Host and Environmental Factors. PMID:34204691
(S)-Reutericyclin: Susceptibility Testing and In Vivo Effect on Murine Fecal Microbiome and Volatile Organic Compounds. PMID:34203988
Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures. PMID:34203511
AB-Kefir Reduced Body Weight and Ameliorated Inflammation in Adipose Tissue of Obese Mice Fed a High-Fat Diet, but Not a High-Sucrose Diet. PMID:34202894
Effects of Wine and Its Microbial-Derived Metabolites on Intestinal Permeability Using Simulated Gastrointestinal Digestion/Colonic Fermentation and Caco-2 Intestinal Cell Models. PMID:34202738
Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow). PMID:34201891
Analysis of Host Jejunum Transcriptome and Associated Microbial Community Structure Variation in Young Calves with Feed-Induced Acidosis. PMID:34201826
Effect of Fungicide Application on Lowbush Blueberries Soil Microbiome. PMID:34201743
Comparative Microbial Profiles of Colonic Digesta between Ningxiang Pig and Large White Pig. PMID:34201441
Exploring Viral Diversity in a Gypsum Karst Lake Ecosystem Using Targeted Single-Cell Genomics. PMID:34201311
Changes in Digestive Microbiota, Rumen Fermentations and Oxidative Stress around Parturition Are Alleviated by Live Yeast Feed Supplementation to Gestating Ewes. PMID:34199914
Effects of Magnesium Oxide and Magnesium Hydroxide Microparticle Foliar Treatment on Tomato PR Gene Expression and Leaf Microbiome. PMID:34199815
Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments. PMID:34199047
The Effect of a Total Fishmeal Replacement by Arthrospira platensis on the Microbiome of African Catfish (Clarias gariepinus). PMID:34198518
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID:34197621
Engineered methanotrophic syntrophy in photogranule communities removes dissolved methane. PMID:34195589
A Single Dose of Nitrate Increases Resilience Against Acidification Derived From Sugar Fermentation by the Oral Microbiome. PMID:34195102
Domestication affects the composition, diversity, and co-occurrence of the cereal seed microbiota. PMID:34194833
Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla. PMID:34194446
Revealing Microbiome Structure and Assembly Process in Three Rhizocompartments of Achyranthes bidentata Under Continuous Monoculture Regimes. PMID:34194412
A Simple Culture Method Enhances the Recovery of Culturable Actinobacteria From Coastal Sediments. PMID:34194410
Microbiota regulate social behaviour via stress response neurons in the brain. PMID:34194038
Defining the resilience of the human salivary microbiota by a 520-day longitudinal study in a confined environment: the Mars500 mission. PMID:34193273
Borrelia afzelii Infection in the Rodent Host Has Dramatic Effects on the Bacterial Microbiome of Ixodes ricinus Ticks. PMID:34191531
Living to the High Extreme: Unraveling the Composition, Structure, and Functional Insights of Bacterial Communities Thriving in the Arsenic-Rich Salar de Huasco Altiplanic Ecosystem. PMID:34190603
Pangenomics reveals alternative environmental lifestyles among chlamydiae. PMID:34188040
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance. PMID:34184913
Aerobic bacterial methane synthesis. PMID:34183407
Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin. PMID:34183063
Optimized bacterial DNA isolation method for microbiome analysis of human tissues. PMID:34180607
Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid-dominated Winogradsky column approach. PMID:34180595
Leveraging 16S rRNA Microbiome Sequencing Data to Identify Bacterial Signatures for Irritable Bowel Syndrome. PMID:34178718
Maternal Antibiotic Treatment Disrupts the Intestinal Microbiota and Intestinal Development in Neonatal Mice. PMID:34177871
Short-Term Effect in Soil Microbial Community of Two Strategies of Recovering Degraded Area in Brazilian Savanna: A Pilot Case Study. PMID:34177841
Gullies and Moraines Are Islands of Biodiversity in an Arid, Mountain Landscape, Asgard Range, Antarctica. PMID:34177836
Remodeling of the maternal gut microbiome during pregnancy is shaped by parity. PMID:34176489
Culture-enriched community profiling improves resolution of the vertebrate gut microbiota. PMID:34174174
Human encroachment into wildlife gut microbiomes. PMID:34172822
Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice. PMID:34172092
Impact of Antibiotic-Induced Depletion of Gut Microbiota and Selenium Supplementation on Plasma Selenoproteome and Metal Homeostasis in a Mice Model. PMID:34171188
Evaluation of the Relationships Between Microbiota and Metabolites in Soft-Type Ripened Cheese Using an Integrated Omics Approach. PMID:34168634
Prokaryotic, Fungal, and Unicellular Eukaryotic Core Communities Across Three Sympatric Marine Sponges From the Southwestern Atlantic Coast Are Dominated Largely by Deterministic Assemblage Processes. PMID:34168631
Microbiome Analysis Reveals Microecological Balance in the Emerging Rice-Crayfish Integrated Breeding Mode. PMID:34168630
Implications of Climate Change: How Does Increased Water Temperature Influence Biofilm and Water Quality of Chlorinated Drinking Water Distribution Systems? PMID:34168627
Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP. PMID:34168213
High-throughput 16S rRNA gene sequencing of the microbial community associated with palm oil mill effluents of two oil processing systems. PMID:34168191
Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus). PMID:34168170
Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica. PMID:34162928
Detection of cell-free microbial DNA using a contaminant-controlled analysis framework. PMID:34162397
Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment. PMID:34161254
Limitation of Microbial Processes at Saturation-Level Salinities in a Microbial Mat Covering a Coastal Salt Flat. PMID:34160273
Genomic Analysis of Family UBA6911 (Group 18 Acidobacteria) Expands the Metabolic Capacities of the Phylum and Highlights Adaptations to Terrestrial Habitats. PMID:34160232
Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunction and microbial dysbiosis in the gut lumen. PMID:34158595
Functional inactivation of pulmonary MAIT cells following 5-OP-RU treatment of non-human primates. PMID:34158594
Validity and safety of ID-JPL934 in lower gastrointestinal symptom improvement. PMID:34158518
Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed. PMID:34158117
Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery. PMID:34158092
In situ rumen degradation characteristics and bacterial colonization of whole cottonseed, cottonseed hull and cottonseed meal with different gossypol content. PMID:34156579
Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean Basins. PMID:34156293
Insights into the Cultured Bacterial Fraction of Corals. PMID:34156291
Structure of Chimpanzee Gut Microbiomes across Tropical Africa. PMID:34156289
"Candidatus Dechloromonas phosphoritropha" and "Ca. D. phosphorivorans", novel polyphosphate accumulating organisms abundant in wastewater treatment systems. PMID:34155336
Iron and sulfate reduction structure microbial communities in (sub-)Antarctic sediments. PMID:34155335
Niche adaptation promoted the evolutionary diversification of tiny ocean predators. PMID:34155140
Miscanthus Grass as a Novel Functional Fiber Source in Extruded Feline Diets. PMID:34150889
Use of Legumes and Yeast as Novel Dietary Protein Sources in Extruded Canine Diets. PMID:34150888
Protein and Microbial Biomarkers in Sputum Discern Acute and Latent Tuberculosis in Investigation of Pastoral Ethiopian Cohort. PMID:34150670
Natural Genetic Diversity in Tomato Flavor Genes. PMID:34149747
An Immunologic Compatibility Testing Was Not Useful for Donor Selection in Fecal Microbiota Transplantation for Ulcerative Colitis. PMID:34149723
Estimating the Time Since Deposition of Saliva Stains With a Targeted Bacterial DNA Approach: A Proof-of-Principle Study. PMID:34149638
The Nonsteroidal Anti-Inflammatory Drug Ketorolac Alters the Small Intestinal Microbiota and Bile Acids Without Inducing Intestinal Damage or Delaying Peristalsis in the Rat. PMID:34149417
Elevated Atmospheric CO2 Modifies Mostly the Metabolic Active Rhizosphere Soil Microbiome in the Giessen FACE Experiment. PMID:34148108
The gut microbiome of the Sunda pangolin (Manis javanica) reveals its adaptation to specialized myrmecophagy. PMID:34141474
Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection. PMID:34138976
Replacement of Metaphylactic Antimicrobial Therapy by Oral Administration of Ligilactobacillus salivarius MP100 in a Pig Farm. PMID:34136556
Compositional Differences in the Oral Microbiome of E-cigarette Users. PMID:34135868
Vertically transmitted microbiome protects eggs from fungal infection and egg failure. PMID:34134779
Identification and Removal of Potential Contaminants in 16S rRNA Gene Sequence Data Sets from Low-Microbial-Biomass Samples: an Example from Mosquito Tissues. PMID:34133198
Microbiome recovery in adult females with uncomplicated urinary tract infections in a randomised phase 2A trial of the novel antibiotic gepotidacin (GSK140944). PMID:34130619
Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments. PMID:34128692
Rhizosphere Bacterial Networks, but Not Diversity, Are Impacted by Pea-Wheat Intercropping. PMID:34127925
Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. PMID:34127845
Alterations in microbiome composition and metabolic byproducts drive behavioral and transcriptional responses to morphine. PMID:34127799
Structural specificities of cell surface β-glucan polysaccharides determine commensal yeast mediated immuno-modulatory activities. PMID:34127673
Anaerobic Microbiota Derived from the Upper Airways Impact Staphylococcus aureus Physiology. PMID:34125598
In situ microcosms deployed at the coast of British Columbia (Canada) to study dilbit weathering and associated microbial communities under marine conditions. PMID:34124756
Palmitic acid mediated change of rhizosphere and alleviation of Fusarium wilt disease in watermelon. PMID:34121905
Fecal microbial composition and functional diversity of Wuzhishan pigs at different growth stages. PMID:34117938
The largest moss carpet transplant in Antarctica and its bryosphere cryptic biodiversity. PMID:34117569
Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses. PMID:34117322
A microbial eukaryote with a unique combination of purple bacteria and green algae as endosymbionts. PMID:34117067
Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs. PMID:34116726
Temporal Bacterial Community Diversity in the Nicotiana tabacum Rhizosphere Over Years of Continuous Monocropping. PMID:34113322
Supplier-origin mouse microbiomes significantly influence locomotor and anxiety-related behavior, body morphology, and metabolism. PMID:34112927
Influence of Peanut, Sorghum, and Soil Salinity on Microbial Community Composition in Interspecific Interaction Zone. PMID:34108953
Selective DNA and Protein Isolation From Marine Macrophyte Surfaces. PMID:34108951
Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan. PMID:34108585
On pickles: biological and sociocultural links between fermented foods and the human gut microbiome. PMID:34107988
Assembly of the Populus Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors. PMID:34106767
Distinctive Microbiome Type Distribution in a Young Adult Balinese Cohort May Reflect Environmental Changes Associated with Modernization. PMID:34105009
Gut Microbiome Changes in Captive Plateau Zokors (Eospalax baileyi). PMID:34103885
Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments. PMID:34100638
Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat. PMID:34099781
Feeding diversified protein sources exacerbates hepatic insulin resistance via increased gut microbial branched-chain fatty acids and mTORC1 signaling in obese mice. PMID:34099716
Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community. PMID:34099669
Modifying gut integrity and microbiome in children with severe acute malnutrition using legume-based feeds (MIMBLE): A pilot trial. PMID:34095882
Dynamic Observation of the Effect of Maternal Caries on the Oral Microbiota of Infants Aged 12-24 Months. PMID:34094997
Understanding the effects of intramuscular injection and feed withdrawal on Salmonella Typhimurium shedding and gut microbiota in pullets. PMID:34090517
Beach sand oil spills select for generalist microbial populations. PMID:34088976
Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana. PMID:34084754
The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structure. PMID:34083632
Bacteroides uniformis CECT 7771 alleviates inflammation within the gut-adipose tissue axis involving TLR5 signaling in obese mice. PMID:34083551
Endophytes isolated from Panax notoginseng converted ginsenosides. PMID:34081833
Mortality and microbial diversity after allogeneic hematopoietic stem cell transplantation: secondary analysis of a randomized nutritional intervention trial. PMID:34078971
Holobiont nitrogen control and its potential for eutrophication resistance in an obligate photosymbiotic jellyfish. PMID:34078452
Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM). PMID:34078434
Microbial exposure during early human development primes fetal immune cells. PMID:34077752
Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens. PMID:34074340
Lampenflora in a Show Cave in the Great Basin Is Distinct from Communities on Naturally Lit Rock Surfaces in Nearby Wild Caves. PMID:34072861
Assessment of the Impact of Temperature on Biofilm Composition with a Laboratory Heat Exchanger Module. PMID:34072656
Does the Composition of the Gut Bacteriome Change during the Growth of Tuna? PMID:34072252
Ruminal Protozoal Populations of Angus Steers Differing in Feed Efficiency. PMID:34071838
Effect of Vitamin A Supplementation on Growth Performance, Serum Biochemical Parameters, Intestinal Immunity Response and Gut Microbiota in American Mink (Neovison vison). PMID:34071204
Effect of You-Gui-Wan on House Dust Mite-Induced Mouse Allergic Asthma via Regulating Amino Acid Metabolic Disorder and Gut Dysbiosis. PMID:34070764
Aronia melanocarpa (Michx.) Elliot, Chaenomeles superba Lindl. and Cornus mas L. Leaf Extracts as Natural Preservatives for Pork Meat Products. PMID:34070170
Combined Effect of Activated Carbon Particles and Non-Adsorptive Spherical Beads as Fluidized Media on Fouling, Organic Removal and Microbial Communities in Anaerobic Membrane Bioreactor. PMID:34069901
Metagenomics Analysis Reveals an Extraordinary Inner Bacterial Diversity in Anisakids (Nematoda: Anisakidae) L3 Larvae. PMID:34069371
Morphological and Metabolite Responses of Potatoes under Various Phosphorus Levels and Their Amelioration by Plant Growth-Promoting Rhizobacteria. PMID:34068175
Effect of Ionizing Radiation on the Bacterial and Fungal Endophytes of the Halophytic Plant Kalidium schrenkianum. PMID:34068093
Microbial Contamination in Hospital Environment Has the Potential to Colonize Preterm Newborns' Nasal Cavities. PMID:34067889
Bacillus Subtilis 29784 as a Feed Additive for Broilers Shifts the Intestinal Microbial Composition and Supports the Production of Hypoxanthine and Nicotinic Acid. PMID:34066686
Coexistence of Three Dominant Bacterial Symbionts in a Social Aphid and Implications for Ecological Adaptation. PMID:34066350
Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert. PMID:34065975
Differences in the On- and Off-Tumor Microbiota between Right- and Left-Sided Colorectal Cancer. PMID:34065545
Gut Microbiota Induced by Pterostilbene and Resveratrol in High-Fat-High-Fructose Fed Rats: Putative Role in Steatohepatitis Onset. PMID:34065444
Microbiomes in Suspended Soils of Vascular Epiphytes Differ from Terrestrial Soil Microbiomes and from Each Other. PMID:34064848
Comparison of the Gut Microbiota of Jeju and Thoroughbred Horses in Korea. PMID:34064714
Composition of Prokaryotic and Eukaryotic Microbial Communities in Waters around the Florida Reef Tract. PMID:34064293
The Efficacy of Short-Term Weight Loss Programs and Consumption of Natural Probiotic Bryndza Cheese on Gut Microbiota Composition in Women. PMID:34064069
Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer. PMID:34063829
A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study. PMID:34063398
The Effect of Antimicrobial Treatment upon the Gill Bacteriome of Atlantic Salmon (Salmo salar L.) and Progression of Amoebic Gill Disease (AGD) In Vivo. PMID:34063289
Maternal Vegetable and Fruit Consumption during Pregnancy and Its Effects on Infant Gut Microbiome. PMID:34063157
Functional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in Madagascar. PMID:34062900
High Resistance of a Sludge Enriched with Nitrogen-Fixing Bacteria to Ammonium Salts and Its Potential as a Biofertilizer. PMID:34062837
Obesity-Related Gut Microbiota Aggravates Alveolar Bone Destruction in Experimental Periodontitis through Elevation of Uric Acid. PMID:34061595
Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys. PMID:34060911
Structure-Specific Fermentation of Galacto-Oligosaccharides, Isomalto-Oligosaccharides and Isomalto/Malto-Polysaccharides by Infant Fecal Microbiota and Impact on Dendritic Cell Cytokine Responses. PMID:34060703
Amplicon-sequencing of raw milk microbiota: impact of DNA extraction and library-PCR. PMID:34059942
Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative Patients. PMID:34058978
Extraction and characterisation of arabinoxylan from brewers spent grain and investigation of microbiome modulation potential. PMID:34057578
Deep conservation of ribosome stall sites across RNA processing genes. PMID:34056595
A Win-Loss Interaction on Fe0 Between Methanogens and Acetogens From a Climate Lake. PMID:34054747
Comprehensive Ecological and Geographic Characterization of Eukaryotic and Prokaryotic Microbiomes in African Anopheles. PMID:34054746
Cataloguing the bacterial diversity in the active ectomycorrhizal zone of Astraeus from a dry deciduous forest of Shorea. PMID:34054322
Microbiota continuum along the chicken oviduct and its association with host genetics and egg formation. PMID:34051407
Gut microbiome-host interactions in driving environmental pollutant trichloroethene-mediated autoimmunity. PMID:34051218
Different Cultivation Environments Affect the Yield, Bacterial Community and Metabolites of Cordyceps cicadae. PMID:34046024
Comparative Evaluation of Microbiota Dynamics and Metabolites Correlation Between Spontaneous and Inoculated Fermentations of Nanfeng Tangerine Wine. PMID:34046021
Experimental validation of small mammal gut microbiota sampling from faeces and from the caecum after death. PMID:34045683
Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing. PMID:34045546
One-Cell Metabolic Phenotyping and Sequencing of Soil Microbiome by Raman-Activated Gravity-Driven Encapsulation (RAGE). PMID:34042466
Consequences of herbal mixture supplementation on milk performance, ruminal fermentation, and bacterial diversity in water buffaloes. PMID:34040891
Spatial Distribution of Arctic Bacterioplankton Abundance Is Linked to Distinct Water Masses and Summertime Phytoplankton Bloom Dynamics (Fram Strait, 79°N). PMID:34040593
Association Between Gut Akkermansia and Metabolic Syndrome is Dose-Dependent and Affected by Microbial Interactions: A Cross-Sectional Study. PMID:34040404
Luminal Bioavailability of Orally Administered ω-3 PUFAs in the Distal Small Intestine, and Associated Changes to the Ileal Microbiome, in Humans with a Temporary Ileostomy. PMID:34036331
Prenatal stress leads to deficits in brain development, mood related behaviors and gut microbiota in offspring. PMID:34036126
Chemosynthetic and photosynthetic bacteria contribute differentially to primary production across a steep desert aridity gradient. PMID:34035443
Gut microbiota composition in health-care facility-and community-onset diarrheic patients with Clostridioides difficile infection. PMID:34035404
Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism. PMID:34030623
Diverse and active archaea communities occur in non-disinfected drinking water systems-Less activity revealed in disinfected and hot water systems. PMID:34027378
Alterations of Gut Microbiota in Patients With Graves' Disease. PMID:34026662
Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements. PMID:34026356
High-throughput sequencing outperforms traditional morphological methods in Blue Catfish diet analysis and reveals novel insights into diet ecology. PMID:34026031
Deep Soil Layers of Drought-Exposed Forests Harbor Poorly Known Bacterial and Fungal Communities. PMID:34025630
Bacterial Communities Associated With Four Blooming Scyphozoan Jellyfish: Potential Species-Specific Consequences for Marine Organisms and Humans Health. PMID:34025606
Organic Matter Type Defines the Composition of Active Microbial Communities Originating From Anoxic Baltic Sea Sediments. PMID:34025597
Shifts in the rhizobiome during consecutive in planta enrichment for phosphate-solubilizing bacteria differentially affect maize P status. PMID:34021699
Methanogenesis in the Digestive Tracts of the Tropical Millipedes Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae). PMID:34020937
Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity. PMID:34017321
Parabacteroides produces acetate to alleviate heparanase-exacerbated acute pancreatitis through reducing neutrophil infiltration. PMID:34016163
Urban wastewater bacterial communities assemble into seasonal steady states. PMID:34016155
Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts. PMID:34016052
Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs. PMID:34014992
Biogeochemical dynamics and microbial community development under sulfate- and iron-reducing conditions based on electron shuttle amendment. PMID:34014980
Soil microbial community responses to short-term nitrogen addition in China's Horqin Sandy Land. PMID:34014949
Midgut bacterial diversity of a leaf-mining beetle, Dactylispa xanthospila (Gestro) (Coleoptera: Chrysomelidae: Cassidinae). PMID:34012315
Metaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils. PMID:34012103
Profiling of tumour-associated microbiota in human hepatocellular carcinoma. PMID:34012007
Perceived Stress and Molecular Bacterial Vaginosis in the National Institutes of Health Longitudinal Study of Vaginal Flora. PMID:34008013
Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities. PMID:34006650
Identifying biases and their potential solutions in human microbiome studies. PMID:34006335
Gut microbiota of frugo-folivorous sifakas across environments. PMID:34006323
Changes in Archaeal Community and Activity by the Invasion of Spartina anglica Along Soil Depth Profiles of a Coastal Wetland. PMID:34003315
Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales. PMID:33999795
Pseudocapillaria tomentosa, Mycoplasma spp., and Intestinal Lesions in Experimentally Infected Zebrafish Danio rerio. PMID:33999743
Biliary Microbiota in Choledocholithiasis and Correlation With Duodenal Microbiota. PMID:33996618
In vitro Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition. PMID:33995299
The Composition of the Microbiota in the Full-Term Fetal Gut and Amniotic Fluid: A Bovine Cesarean Section Study. PMID:33995290
Prokaryotic diversity and biogeochemical characteristics of field living and laboratory cultured stromatolites from the hypersaline Laguna Interna, Salar de Atacama (Chile). PMID:33993356
Tapirus bairdii-Associated Fecal Microbiome from a Critical Conservation Area: Calakmul, México. PMID:33990869
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds. PMID:33990618
Real-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis. PMID:33990613
Gut microbiota profiles of young South Indian children: Child sex-specific relations with growth. PMID:33989353
De novo transcriptome assembly of the green alga Ankistrodesmus falcatus. PMID:33989339
Endozoicomonadaceae symbiont in gills of Acesta clam encodes genes for essential nutrients and polysaccharide degradation. PMID:33988698
Transcriptomic Analysis of Skin Color in Anole Lizards. PMID:33988681
The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression. PMID:33987532
Bacterial Diversity Profiling of the New Zealand Parasitic Blowfly Lucilia sericata Based on 16S rRNA Gene Amplicon Sequencing. PMID:33986085
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. PMID:33981000
Insights into the taxonomic and functional characterization of agricultural crop core rhizobiomes and their potential microbial drivers. PMID:33980901
Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds. PMID:33980682
Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica. PMID:33980678
Sources of SARS-CoV-2 and Other Microorganisms in Dental Aerosols. PMID:33977764
Gut microbiome of migratory shorebirds: Current status and future perspectives. PMID:33976772
Homopeptide and homocodon levels across fungi are coupled to GC/AT-bias and intrinsic disorder, with unique behaviours for some amino acids. PMID:33976321
Evaluation of changes in intestinal microbiota in Crohn's disease patients after anti-TNF alpha treatment. PMID:33976272
Transcriptomics analysis of differentially expressed genes in subcutaneous and perirenal adipose tissue of sheep as affected by their pre- and early postnatal malnutrition histories. PMID:33975549
Fetal meconium does not have a detectable microbiota before birth. PMID:33972766
The microbial profile of a tissue necrosis affecting the Atlantic invasive coral Tubastraea tagusensis. PMID:33972618
Genome-Wide Changes of Regulatory Non-Coding RNAs Reveal Pollen Development Initiated at Ecodormancy in Peach. PMID:33968979
Prokaryotic diversity of tropical coastal sand dunes ecosystem using metagenomics. PMID:33968595
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas. PMID:33967996
High Diversity and Functional Potential of Undescribed "Acidobacteriota" in Danish Wastewater Treatment Plants. PMID:33967982
Mycoplankton Biome Structure and Assemblage Processes Differ Along a Transect From the Elbe River Down to the River Plume and the Adjacent Marine Waters. PMID:33967979
The Bacterial Community Diversity of Bathroom Hot Tap Water Was Significantly Lower Than That of Cold Tap and Shower Water. PMID:33967975
Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients. PMID:33963212
Escherichia coli Strains Producing Selected Bacteriocins Inhibit Porcine Enterotoxigenic Escherichia coli (ETEC) under both In Vitro and In Vivo Conditions. PMID:33962981
Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field. PMID:33962687
White and Red Sorghum as Primary Carbohydrate Sources in Extruded Diets of Felines. PMID:33959655
Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis. PMID:33959381
Resistance, Resilience, and Recovery of Dryland Soil Bacterial Communities Across Multiple Disturbances. PMID:33959111
16S rRNA Gene Amplicon Profiling of the New Zealand Parasitic Blowfly Calliphora vicina. PMID:33958401
Towards enhancing coral heat tolerance: a "microbiome transplantation" treatment using inoculations of homogenized coral tissues. PMID:33957989
Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast. PMID:33953214
Coadaptation between host genome and microbiome under long-term xenobiotic-induced selection. PMID:33952510
Changes of gut microbiome composition and metabolites associated with hypertensive heart failure rats. PMID:33952214
Protein Kinase D2 drives chylomicron-mediated lipid transport in the intestine and promotes obesity. PMID:33949105
Red Fluorescence of European Hedgehog (Erinaceus europaeus) Spines Results from Free-Base Porphyrins of Potential Microbial Origin. PMID:33948884
Bacterial Communities in Concrete Reflect Its Composite Nature and Change with Weathering. PMID:33947799
Convergence of the turkey gut microbiota following cohabitation under commercial settings. PMID:33947458
Sequential Modulation of the Equine Fecal Microbiota and Fibrolytic Capacity Following Two Consecutive Abrupt Dietary Changes and Bacterial Supplementation. PMID:33946811
Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study. PMID:33946722
The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in A Desert Ecosystem. PMID:33946616
Breastfeeding Practices Influence the Breast Milk Microbiota Depending on Pre-Gestational Maternal BMI and Weight Gain over Pregnancy. PMID:33946343
Dead or alive: microbial viability treatment reveals both active and inactive bacterial constituents in the fish gut microbiota. PMID:33945191
Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea. PMID:33941698
Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion. PMID:33941277
Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing. PMID:33939741
Specialized pro-resolving mediator lipidome and 16S rRNA bacterial microbiome data associated with human chronic rhinosinusitis. PMID:33937456
Frozen Mother's Own Milk Can Be Used Effectively to Personalize Donor Human Milk. PMID:33936012
Do Aerial Nitrogen Depositions Affect Fungal and Bacterial Communities of Oak Leaves? PMID:33935994
Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments. PMID:33935987
Endothelial IGF-1 receptor mediates crosstalk with the gut wall to regulate microbiota in obesity. PMID:33934497
Effects of Whole-Grain and Sugar Content in Infant Cereals on Gut Microbiota at Weaning: A Randomized Trial. PMID:33925049
Rootstocks Shape Their Microbiome-Bacterial Communities in the Rhizosphere of Different Grapevine Rootstocks. PMID:33924464
Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan. PMID:33923859
The Microbiome of the Reef Macroalga Sargassum ilicifolium in Singapore. PMID:33922357
Dietary Curdlan Enhances Bifidobacteria and Reduces Intestinal Inflammation in Mice. PMID:33920960
Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal. PMID:33920057
Ocean Acidification Induces Changes in Virus-Host Relationships in Mediterranean Benthic Ecosystems. PMID:33917639
Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5. PMID:33917603
The Influence of Diet Change and Oral Metformin on Blood Glucose Regulation and the Fecal Microbiota of Healthy Horses. PMID:33915682
Investigation of Fats, Oils, and Grease Co-digestion With Food Waste in Anaerobic Membrane Bioreactors and the Associated Microbial Community Using MinION Sequencing. PMID:33912543
Differences in the Genital Microbiota in Women Who Naturally Clear Chlamydia trachomatis Infection Compared to Women Who Do Not Clear; A Pilot Study. PMID:33912473
Aberrant Gut Microbiome Contributes to Intestinal Oxidative Stress, Barrier Dysfunction, Inflammation and Systemic Autoimmune Responses in MRL/lpr Mice. PMID:33912174
Microbial Community Characteristics Largely Unaffected by X-Ray Computed Tomography of Sediment Cores. PMID:33912140
Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections. PMID:33911468
Long term crop rotation effect on subsequent soybean yield explained by soil and root-associated microbiomes and soil health indicators. PMID:33911170
Multiple carbon incorporation strategies support microbial survival in cold subseafloor crustal fluids. PMID:33910898
Longitudinal Profiling of the Macaque Vaginal Microbiome Reveals Similarities to Diverse Human Vaginal Communities. PMID:33906914
Lipocalin 2 modulates dendritic cell activity and shapes immunity to influenza in a microbiome dependent manner. PMID:33905460
Association of Vaginal Microbiota With Signs and Symptoms of the Genitourinary Syndrome of Menopause Across Reproductive Stages. PMID:33903897
The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics. PMID:33902743
Facilitation in the soil microbiome does not necessarily lead to niche expansion. PMID:33902741
A rather dry subject; investigating the study of arid-associated microbial communities. PMID:33902728
Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom. PMID:33902727
Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences. PMID:33902725
Trichomes form genotype-specific microbial hotspots in the phyllosphere of tomato. PMID:33902724
Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils. PMID:33902718
Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems - focus on the pelagic environment. PMID:33902717
Fecal microbiota in children with juvenile idiopathic arthritis treated with methotrexate or etanercept. PMID:33902613
Distribution and diversity of eukaryotic microalgae in Kuwait waters assessed using 18S rRNA gene sequencing. PMID:33901235
Dietary conjugated linoleic acid links reduced intestinal inflammation to amelioration of CNS autoimmunity. PMID:33899089
Processing human urine and ureteral stents for 16S rRNA amplicon sequencing. PMID:33899017
Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit. PMID:33898360
Microbiome-Assisted Breeding to Understand Cultivar-Dependent Assembly in Cucurbita pepo. PMID:33897731
Rock-Hosted Subsurface Biofilms: Mineral Selectivity Drives Hotspots for Intraterrestrial Life. PMID:33897673
Illumina Sequencing and Metabolomics Analysis Reveal Thiamine Modulation of Ruminal Microbiota and Metabolome Characteristics in Goats Fed a High-Concentrate Diet. PMID:33897666
Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure. PMID:33897658
Understanding the Shift in the Microbiome of Composts That Are Optimized for a Better Fit-for-Purpose in Growing Media. PMID:33897654
Blastocystis Colonization Alters the Gut Microbiome and, in Some Cases, Promotes Faster Recovery From Induced Colitis. PMID:33897648
Gut Structure and Microbial Communities in Sirex noctilio (Hymenoptera: Siricidae) and Their Predicted Contribution to Larval Nutrition. PMID:33897646
Taxonomic composition and variation in the gut microbiota of laboratory mice. PMID:33893864
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere. PMID:33893339
Extracellular and Intracellular Lanthanide Accumulation in the Methylotrophic Beijerinckiaceae Bacterium RH AL1. PMID:33893117
Metatranscriptomic analyses reveal ruminal pH regulates fiber degradation and fermentation by shifting the microbial community and gene expression of carbohydrate-active enzymes. PMID:33892824
Host phylogeny and host ecology structure the mammalian gut microbiota at different taxonomic scales. PMID:33892813
Divergent airway microbiomes in lung transplant recipients with or without pulmonary infection. PMID:33892717
Cable bacteria at oxygen-releasing roots of aquatic plants: a widespread and diverse plant-microbe association. PMID:33891715
Non-small cell lung cancer microbiota characterization: Prevalence of enteric and potentially pathogenic bacteria in cancer tissues. PMID:33891617
Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent. PMID:33889140
From the Andes to the desert: 16S rRNA metabarcoding characterization of aquatic bacterial communities in the Rimac river, the main source of water for Lima, Peru. PMID:33886647
Long-term effects of maize straw return and manure on the microbial community in cinnamon soil in Northern China using 16S rRNA sequencing. PMID:33886593
Surveillance of densoviruses and mesomycetozoans inhabiting grossly normal tissues of three Aotearoa New Zealand asteroid species. PMID:33886557
Asexuality Associated with Marked Genomic Expansion of Tandemly Repeated rRNA and Histone Genes. PMID:33885820
Environmental factors shape the epiphytic bacterial communities of Gracilariopsis lemaneiformis. PMID:33883606
Fecal microbiota changes with fermented kimchi intake regulated either formation or advancement of colon adenoma. PMID:33879965
Seasonal dynamics of diet-gut microbiota interaction in adaptation of yaks to life at high altitude. PMID:33879801
Species-specific but not phylosymbiotic gut microbiomes of New Guinean passerine birds are shaped by diet and flight-associated gut modifications. PMID:33878920
Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments. PMID:33877964
2,4-Dichlorophenoxyacetic acid degradation in methanogenic mixed cultures obtained from Brazilian Amazonian soil samples. PMID:33877512
Effect on simultaneous removal of ammonia, nitrate, and phosphorus via advanced stacked assembly biological filter for rural domestic sewage treatment. PMID:33877511
Salt-induced recruitment of specific root-associated bacterial consortium capable of enhancing plant adaptability to salt stress. PMID:33875820
Transcriptomic analysis to infer key molecular players involved during host response to NDV challenge in Gallus gallus (Leghorn & Fayoumi). PMID:33875770
Characterization of microbial response to petroleum hydrocarbon contamination in a lacustrine ecosystem. PMID:33871774
Limited influence of marine sediment lyophilization on prokaryotic community structure assessed via amplicon sequencing: an example from environmentally contrasted sediment layers in Toulon harbor (France). PMID:33868808
Transcriptomic dynamics changes related to anthocyanin accumulation in the fleshy roots of carmine radish (Raphanus sativus L.) characterized using RNA-Seq. PMID:33868802
Diversity structure of the microbial communities in the guts of four neotropical termite species. PMID:33868801
Alteration of the Gut Microbiome in Chronic Kidney Disease Patients and Its Association With Serum Free Immunoglobulin Light Chains. PMID:33868230
Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road Salts. PMID:33868217
Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria. PMID:33868201
A decadal perspective on north water microbial eukaryotes as Arctic Ocean sentinels. PMID:33863972
Experimental parameters defining ultra-low biomass bioaerosol analysis. PMID:33863892
Human breast microbiome correlates with prognostic features and immunological signatures in breast cancer. PMID:33863341
Microbiome Community Structure and Functional Gene Partitioning in Different Micro-Niches Within a Sporocarp-Forming Fungus. PMID:33859628
Animals, protists and bacteria share marine biogeographic patterns. PMID:33859375
Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy. PMID:33859339
Phenotypic and Clonal Stability of Antigen-Inexperienced Memory-like T Cells across the Genetic Background, Hygienic Status, and Aging. PMID:33858960
The impact of urine microbiota in patients with lower urinary tract symptoms. PMID:33858430
Stable high-density and maternally inherited Wolbachia infections in Anopheles moucheti and Anopheles demeilloni mosquitoes. PMID:33857432
Distinct community structures of soil nematodes from three ecologically different sites revealed by high-throughput amplicon sequencing of four 18S ribosomal RNA gene regions. PMID:33857177
Diversity of microbial community and its metabolic potential for nitrogen and sulfur cycling in sediments of Phu Quoc island, Gulf of Thailand. PMID:33856662
Microbiome analysis of feline odontoclastic resorptive lesion (FORL) and feline oral health. PMID:33856291
Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut Microbiota. PMID:33854488
Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus. PMID:33854127
The gut virome of healthy children during the first year of life is diverse and dynamic. PMID:33852569
Differential Patterns of Microbiota Recovery in Symbiotic and Aposymbiotic Corals following Antibiotic Disturbance. PMID:33850041
In Vitro Gut Modeling as a Tool for Adaptive Evolutionary Engineering of Lactiplantibacillus plantarum. PMID:33850040
[Correlation analysis between type 2 diabetes and core gut microbiota]. PMID:33849826
Modified PCR protocol to increase sensitivity for determination of bacterial community composition. PMID:33849648
Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps). PMID:33848236
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. PMID:33846371
Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus). PMID:33845910
Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome. PMID:33842385
Dynamics of hepatic steatosis resolution and changes in gut microbiome with weight loss in nonalcoholic fatty liver disease. PMID:33841891
Dysbiosis of intestinal microbiota in critically ill patients and risk of in-hospital mortality. PMID:33841678
Venomous Snakes Reveal Ecological and Phylogenetic Factors Influencing Variation in Gut and Oral Microbiomes. PMID:33841384
Comparative Analysis of Gut Microbiota in Captive and Wild Oriental White Storks: Implications for Conservation Biology. PMID:33841373
Multidimensional Approach for Investigating the Effects of an Antibiotic-Probiotic Combination on the Equine Hindgut Ecosystem and Microbial Fibrolysis. PMID:33841371
Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity. PMID:33841352
Thermal Stress Interacts With Surgeonfish Feces to Increase Coral Susceptibility to Dysbiosis and Reduce Tissue Regeneration. PMID:33841351
Global Diversity and Biogeography of the Zostera marina Mycobiome. PMID:33837008
When your host shuts down: larval diapause impacts host-microbiome interactions in Nasonia vitripennis. PMID:33836829
Effects of DNA preservation solution and DNA extraction methods on microbial community profiling of soil. PMID:33834428
Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing. PMID:33833745
Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation. PMID:33833418
Elemental iron modifies the redox environment of the gastrointestinal tract: A novel therapeutic target and test for metabolic syndrome. PMID:33831549
Evaluation of V2 18S rDNA barcode marker and assessment of sample collection and DNA extraction methods for metabarcoding of autotrophic euglenids. PMID:33830624
The skin microbiota in equine pastern dermatitis: a case-control study of horses in Switzerland. PMID:33830562
Metabolic capabilities mute positive response to direct and indirect impacts of warming throughout the soil profile. PMID:33828081
Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home. PMID:33827686
Cascading effects of composts and cover crops on soil chemistry, bacterial communities and the survival of foodborne pathogens. PMID:33825272
Antibiotics at birth and later antibiotic courses: effects on gut microbiota. PMID:33824448
Prokaryotic taxonomy and nomenclature in the age of big sequence data. PMID:33824426
Skin bacteria of rainbow trout antagonistic to the fish pathogen Flavobacterium psychrophilum. PMID:33824380
Fecal Microbiome Transplantation from Children with Autism Spectrum Disorder Modulates Tryptophan and Serotonergic Synapse Metabolism and Induces Altered Behaviors in Germ-Free Mice. PMID:33824200
Neonatal Enteropathogenic Escherichia coli Infection Disrupts Microbiota-Gut-Brain Axis Signaling. PMID:33820817
The Atg16l1 gene: characterization of wild type, knock-in, and knock-out phenotypes in rats. PMID:33818130
Pediococcus acidilactici Strains Improve Constipation Symptoms and Regulate Intestinal Flora in Mice. PMID:33816357
The Role of Intestinal Dysbacteriosis Induced Arachidonic Acid Metabolism Disorder in Inflammaging in Atherosclerosis. PMID:33816331
Changes in the Human Gut Microbiota Associated With Colonization by Blastocystis sp. and Entamoeba spp. in Non-Industrialized Populations. PMID:33816323
Nanopore sequencing and its application to the study of microbial communities. PMID:33815688
Higher Abundance of Sediment Methanogens and Methanotrophs Do Not Predict the Atmospheric Methane and Carbon Dioxide Flows in Eutrophic Tropical Freshwater Reservoirs. PMID:33815337
Identification and Validation of Reference Genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR Using RNA-Seq Data. PMID:33815328
Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China. PMID:33815327
Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19. PMID:33815323
Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters. PMID:33815317
Environmental Temperatures Affect the Gastrointestinal Microbes of the Chinese Giant Salamander. PMID:33815302
The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation. PMID:33811029
Analysis of Soil Fungal and Bacterial Communities in Tianchi Volcano Crater, Northeast China. PMID:33810555
Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment. PMID:33810449
New Insights on the Zeugodacus cucurbitae (Coquillett) Bacteriome. PMID:33810199
A Metataxonomic Approach Reveals Diversified Bacterial Communities in Antarctic Sponges. PMID:33810171
Amplicon Sequencing of Variable 16S rRNA from Bacteria and ITS2 Regions from Fungi and Plants, Reveals Honeybee Susceptibility to Diseases Results from Their Forage Availability under Anthropogenic Landscapes. PMID:33810160
Relationship between Nutrient Intake and Human Gut Microbiota in Monozygotic Twins. PMID:33809761
Oral and Intravenous Iron Therapy Differentially Alter the On- and Off-Tumor Microbiota in Anemic Colorectal Cancer Patients. PMID:33809624
Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens. PMID:33809351
Differences in the Microbial Composition of Hemodialysis Patients Treated with and without β-Blockers. PMID:33809103
A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome. PMID:33808770
Diversity of Microorganisms in Biocrusts Surrounding Highly Saline Potash Tailing Piles in Germany. PMID:33808463
Bacterial and Archaeal Structural Diversity in Several Biodeterioration Patterns on the Limestone Walls of the Old Cathedral of Coimbra. PMID:33808176
Metagenomic Analysis of the Respiratory Microbiome of a Broiler Flock from Hatching to Processing. PMID:33807233
Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment. PMID:33807193
Characterization of the Luminal and Mucosa-Associated Microbiome along the Gastrointestinal Tract: Results from Surgically Treated Preterm Infants and a Murine Model. PMID:33806771
Improvement of Atopic Dermatitis by Synbiotic Baths. PMID:33806491
HIV-Exposed Seronegative Sex Workers Express Low T-Cell Activation and an Intact Ectocervical Tissue Microenvironment. PMID:33806390
Lacticaseibacillus paracasei PS23 Effectively Modulates Gut Microbiota Composition and Improves Gastrointestinal Function in Aged SAMP8 Mice. PMID:33805289
Dynamics of Gut Microbiota Recovery after Antibiotic Exposure in Young and Old Mice (A Pilot Study). PMID:33804656
Processing Matters in Nutrient-Matched Laboratory Diets for Mice-Microbiome. PMID:33803597
A Comparison of the Colonic Microbiome and Volatile Organic Compound Metabolome of Anoplocephala perfoliata Infected and Non-Infected Horses: A Pilot Study. PMID:33803473
New Insights into Microbial Diversity of the Traditional Packed Table Olives Aloreña de Málaga through Metataxonomic Analysis. PMID:33803149
The Fecal Bacterial Microbiota in Horses with Equine Recurrent Uveitis. PMID:33803123
Assessment of Chlorella sorokiniana Growth in Anaerobic Digester Effluent. PMID:33802500
The Composition and Diversity of the Gut Microbiota in Children Is Modifiable by the Household Dogs: Impact of a Canine-Specific Probiotic. PMID:33800493
Colonization Dynamics of Multidrug-Resistant Klebsiella pneumoniae Are Dictated by Microbiota-Cluster Group Behavior over Individual Antibiotic Susceptibility: A Metataxonomic Analysis. PMID:33800048
Dysbiosis and Enhanced Beta-Defensin Production in Hair Follicles of Patients with Lichen Planopilaris and Frontal Fibrosing Alopecia. PMID:33800045
Re-Analysis of 16S rRNA Gene Sequence Data Sets Uncovers Disparate Laboratory-Specific Microbiomes Associated with the Yellow Fever Mosquito (Aedes aegypti). PMID:33797563
Enrichment of Food With Tannin Extracts Promotes Healthy Changes in the Human Gut Microbiota. PMID:33796085
Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation. PMID:33795026
Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing Datasets. PMID:33790876
Age Matters: Community Assembly in the Pig Fecal Microbiome in the First Month of Life. PMID:33790871
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. PMID:33790294
A Unique Gut Microbiome-Physical Function Axis Exists in Older People with HIV: An Exploratory Study. PMID:33787299
Multiple impacts of microplastics can threaten marine habitat-forming species. PMID:33785849
Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant. PMID:33785619
Azithromycin and the microbiota of cystic fibrosis sputum. PMID:33784986
Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota. PMID:33784380
Identity and hydrocarbon degradation activity of enriched microorganisms from natural oil and asphalt seeps in the Kurdistan Region of Iraq (KRI). PMID:33782778
The temperature sensitivity of soil: microbial biodiversity, growth, and carbon mineralization. PMID:33782569
Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes. PMID:33782567
Esophageal microbiome in active eosinophilic esophagitis and changes induced by different therapies. PMID:33782490
Expansion and persistence of antibiotic-specific resistance genes following antibiotic treatment. PMID:33779498
The intestinal microbiota and metabolites in patients with anorexia nervosa. PMID:33779487
Age-Based Variations in the Gut Microbiome of the Shennongjia (Hubei) Golden Snub-Nosed Monkey (Rhinopithecus roxellana hubeiensis). PMID:33778078
Whipworm-Associated Intestinal Microbiome Members Consistent Across Both Human and Mouse Hosts. PMID:33777847
Distinctive gut microbial dysbiosis between chronic alcoholic fatty liver disease and metabolic-associated fatty liver disease in mice. PMID:33777186
Evaluation of Established Methods for DNA Extraction and Primer Pairs Targeting 16S rRNA Gene for Bacterial Microbiota Profiling of Olive Xylem Sap. PMID:33777075
Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria. PMID:33776974
The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia. PMID:33776953
Environmental and Anthropogenic Factors Shape Major Bacterial Community Types Across the Complex Mountain Landscape of Switzerland. PMID:33776948
Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype. PMID:33772106
Chitin- and Keratin-Rich Soil Amendments Suppress Rhizoctonia solani Disease via Changes to the Soil Microbial Community. PMID:33771785
Effects of Peroxyacetic Acid Spray and Storage Temperature on the Microbiota and Sensory Properties of Vacuum-Packed Subprimal Cuts of Meat. PMID:33771784
Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson's disease individuals. PMID:33771222
Gut microbiomes of bigheaded carps and hybrids provide insights into invasion: A hologenome perspective. PMID:33767748
Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy Season. PMID:33767675
Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes. PMID:33767674
Isolation and characterization of a halophilic Modicisalibacter sp. strain Wilcox from produced water. PMID:33767228
Ultrafine particles altered gut microbial population and metabolic profiles in a sex-specific manner in an obese mouse model. PMID:33767227
No hints at glyphosate-induced ruminal dysbiosis in cows. PMID:33767196
Distinct tumor bacterial microbiome in lung adenocarcinomas manifested as radiological subsolid nodules. PMID:33765542
Ancient grains as novel dietary carbohydrate sources in canine diets. PMID:33765135
Physicochemical and Microbial Diversity Analyses of Indian Hot Springs. PMID:33763045
Effect of salinity on cable bacteria species composition and diversity. PMID:33760391
Retinitis pigmentosa is associated with shifts in the gut microbiome. PMID:33758301
Evaluation of the gut microbiome in association with biological signatures of inflammation in murine polytrauma and shock. PMID:33758228
Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling. PMID:33758030
Blood cultures and blood microbiota analysis as surrogates for bronchoalveolar lavage fluid analysis in dogs with bacterial pneumonia. PMID:33757515
16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya. PMID:33755699
Replacing dietary antibiotics with 0.20% l-glutamine in swine nursery diets: impact on intestinal physiology and the microbiome following weaning and transport. PMID:33755169
Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations. PMID:33753881
Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. PMID:33750910
Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential. PMID:33750827
The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period. PMID:33746924
Analysis of a Methanogen and an Actinobacterium Dominating the Thermophilic Microbial Community of an Electromethanogenic Biocathode. PMID:33746613
Characterization of the first cultured free-living representative of Candidatus Izemoplasma uncovers its unique biology. PMID:33746205
A Preliminary Comparison on Faecal Microbiomes of Free-Ranging Large Baleen (Balaenoptera musculus, B. physalus, B. borealis) and Toothed (Physeter macrocephalus) Whales. PMID:33745062
Calorie restriction prevents age-related changes in the intestinal microbiota. PMID:33744869
Orange corn diets associated with lower severity of footpad dermatitis in broilers. PMID:33744614
Role of Phylogenetic Structure in the Dynamics of Coastal Viral Assemblages. PMID:33741635
Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. PMID:33741058
Exodontia associated bacteremia in horses characterized by next generation sequencing. PMID:33737590
Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome. PMID:33735198
Depth Profile of Nitrifying Archaeal and Bacterial Communities in the Remote Oligotrophic Waters of the North Pacific. PMID:33732221
Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation. PMID:33732217
Benchmarking DNA isolation kits used in analyses of the urinary microbiome. PMID:33731788
Bacterial diversity patterns of desert dunes in the northeastern Qinghai-Tibet Plateau, China. PMID:33730221
Effects of precipitation change and nitrogen addition on the composition, diversity, and molecular ecological network of soil bacterial communities in a desert steppe. PMID:33730102
Integrative Transkingdom Analysis of the Gut Microbiome in Antibiotic Perturbation and Critical Illness. PMID:33727397
Inter- and Intra-Annual Bacterioplankton Community Patterns in a Deepwater Sub-Arctic Region: Persistent High Background Abundance of Putative Oil Degraders. PMID:33727364
Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation. PMID:33726846
Altered oral microbiota composition associated with recurrent aphthous stomatitis in young females. PMID:33725829
Capillibacterium thermochitinicola gen. nov., sp. nov., a novel anaerobic thermophilic chitinolytic bacterium from compost. PMID:33724176
The Himalayan Onion (Allium wallichii Kunth) Harbors Unique Spatially Organized Bacterial Communities. PMID:33723621
Gut microbiota in patients with newly diagnosed acromegaly: a pilot cross-sectional study. PMID:33721175
Comparison of gut microbiota between adults with autism spectrum disorder and obese adults. PMID:33717692
Optimization and validation of a cost-effective protocol for biosurveillance of invasive alien species. PMID:33717437
Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard). PMID:33717004
Local Geomorphological Gradients and Land Use Patterns Play Key Role on the Soil Bacterial Community Diversity and Dynamics in the Highly Endemic Indigenous Afrotemperate Coastal Scarp Forest Biome. PMID:33716998
Genetic and biological characterisation of three cryptic Eimeria operational taxonomic units that infect chickens (Gallus gallus domesticus). PMID:33713650
Expanding the repertoire of electron acceptors for the anaerobic oxidation of methane in carbonates in the Atlantic and Pacific Ocean. PMID:33712702
Deep-sea microbes as tools to refine the rules of innate immune pattern recognition. PMID:33712473
Influence of Pelvic Intensity-Modulated Radiation Therapy With Concurrent Cisplatin-Based Chemotherapy of Cervical Cancer on the Vaginal Microbiome. PMID:33708628
Fecal Microbiota Transplantation Shows Marked Shifts in the Multi-Omic Profiles of Porcine Post-weaning Diarrhea. PMID:33708182
Longitudinal Study of the Bulk Tank Milk Microbiota Reveals Major Temporal Shifts in Composition. PMID:33708181
Fibroblastic reticular cell lineage convergence in Peyer's patches governs intestinal immunity. PMID:33707780
Response to Edaphoclimatic Conditions and Crop Management of the Bacterial Microbiome of Musa acuminata Rhizosphere Profiled by 16S rRNA Gene Amplicon Sequencing. PMID:33707338
Microbiological findings in early and late implant loss: an observational clinical case-controlled study. PMID:33706748
Dissecting the contribution of host genetics and the microbiome in complex behaviors. PMID:33705688
Bacterial community analysis of purulent material from liver abscesses of crossbred cattle and Holstein steers fed finishing diets with or without tylosin. PMID:33693672
Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis. PMID:33692818
Maize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome. PMID:33692487
Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance. PMID:33691625
SARS-CoV-2 infection in nonhuman primates alters the composition and functional activity of the gut microbiota. PMID:33685349
Different co-occurring bacteria enhance or decrease the growth of the microalga Nannochloropsis sp. CCAP211/78. PMID:33683803
Host resistance to Bacillus thuringiensis is linked to altered bacterial community within a specialist insect herbivore. PMID:33683750
Characterizing the culturable surface microbiomes of diverse marine animals. PMID:33681975
A De Novo Transcriptome Assembly of Ceratopteris richardii Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants. PMID:33681974
Reduction of Sb(V) by coupled biotic-abiotic processes under sulfidogenic conditions. PMID:33681496
The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch. PMID:33679641
Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area. PMID:33679628
Students in a Course-Based Undergraduate Research Experience Course Discovered Dramatic Changes in the Bacterial Community Composition Between Summer and Winter Lake Samples. PMID:33679627
Akkermansia muciniphila and environmental enrichment reverse cognitive impairment associated with high-fat high-cholesterol consumption in rats. PMID:33678110
Association of maternal gut microbiota and plasma metabolism with congenital heart disease in offspring: a multi-omic analysis. PMID:33674681
Selective Uptake of Pelagic Microbial Community Members by Caribbean Reef Corals. PMID:33674432
Gut Microbial Composition Differs Extensively among Indian Native Chicken Breeds Originated in Different Geographical Locations and a Commercial Broiler Line, but Breed-Specific, as Well as Across-Breed Core Microbiomes, Are Found. PMID:33672925
Expeller-Pressed Canola (Brassica napus) Meal Modulates the Structure and Function of the Cecal Microbiota, and Alters the Metabolome of the Pancreas, Liver, and Breast Muscle of Broiler Chickens. PMID:33672178
Comparison of Fecal Microbiota of Horses Suffering from Atypical Myopathy and Healthy Co-Grazers. PMID:33672034
Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages. PMID:33671759
Bacterial Composition and Diversity of the Digestive Tract of Odontomachus monticola Emery and Ectomomyrmex javanus Mayr. PMID:33671250
Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition. PMID:33670245
Dysfunctional Gut Microbiome Networks in Childhood IgE-Mediated Food Allergy. PMID:33669849
Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable. PMID:33669471
Sex-Dependent Effects of 7,8-Dihydroxyflavone on Metabolic Health Are Associated with Alterations in the Host Gut Microbiome. PMID:33669347
Association between Gut Microbial Diversity and Carotid Intima-Media Thickness. PMID:33668894
A Comparison of the In Vitro Effects of 2'Fucosyllactose and Lactose on the Composition and Activity of Gut Microbiota from Infants and Toddlers. PMID:33668823
Exploring the Gut Microbiome Alteration of the European Hare (Lepus europaeus) after Short-Term Diet Modifications. PMID:33668574
Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human Subjects. PMID:33668550
Gut Microbiome Profiles and Associated Metabolic Pathways in HIV-Infected Treatment-Naïve Patients. PMID:33668457
Unraveling the Gut Microbiome of the Invasive Small Indian Mongoose (Urva auropunctata) in the Caribbean. PMID:33668312
Multiple Selection Criteria for Probiotic Strains with High Potential for Obesity Management. PMID:33668212
Oral seeding and niche-adaptation of middle ear biofilms in health. PMID:33665609
Dysbiosis of the Saliva Microbiome in Patients With Polycystic Ovary Syndrome. PMID:33665172
Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities. PMID:33664723
Heterogeneity of Microbial Communities in Soils From the Antarctic Peninsula Region. PMID:33664717
Mesozooplankton taurine production and prokaryotic uptake in the northern Adriatic Sea. PMID:33664530
Alterations in skin microbiome mediated by radiotherapy and their potential roles in the prognosis of radiotherapy-induced dermatitis: a pilot study. PMID:33664352
Microbiome diversity of cotton aphids (Aphis gossypii) is associated with host alternation. PMID:33664278
Probiotics mediated gut microbiota diversity shifts are associated with reduction in histopathology and shedding of Lawsonia intracellularis. PMID:33663618
Effluent solids recirculation to municipal sludge digesters enhances long-chain fatty acids degradation capacity. PMID:33663594
Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing. PMID:33663381
Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium. PMID:33663379
Bacterial biofilm formation on vaginal ring pessaries used for pelvic organ prolapse. PMID:33660005
Anaerobic endosymbiont generates energy for ciliate host by denitrification. PMID:33658719
Gut dysbiosis and mortality in hemodialysis patients. PMID:33658514
Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy. PMID:33658300
Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India. PMID:33658058
MicroRNA-221 and -222 modulate intestinal inflammatory Th17 cell response as negative feedback regulators downstream of interleukin-23. PMID:33657395
Wastewater treatment works change the intestinal microbiomes of insectivorous bats. PMID:33657147
Supplementation of tuna hydrolysate and insect larvae improves fishmeal replacement efficacy of poultry by-product in Lates calcarifer (Bloch, 1790) juveniles. PMID:33654188
Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients. PMID:33654104
Nutraceuticals Induced Changes in the Broiler Gastrointestinal Tract Microbiota. PMID:33653943
Air versus Water Chilling of Chicken: a Pilot Study of Quality, Shelf-Life, Microbial Ecology, and Economics. PMID:33653941
Calf Diarrhea Caused by Prolonged Expansion of Autochthonous Gut Enterobacteriaceae and Their Lytic Bacteriophages. PMID:33653940
Effect of copper sulfate on the external microbiota of adult common snook (Centropomus undecimalis). PMID:33653402
The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study. PMID:33652802
Dietary vitamin K is remodeled by gut microbiota and influences community composition. PMID:33651646
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals. PMID:33650801
Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity. PMID:33649554
Denitrifying bacterial communities in surface-flow constructed wetlands during different seasons: characteristics and relationships with environment factors. PMID:33649362
Multi-country investigation of the diversity and associated microorganisms isolated from tick species from domestic animals, wildlife and vegetation in selected african countries. PMID:33646482
Microbiomes of different ages in Rendzic Leptosols in the Crimean Peninsula. PMID:33643711
Microbial Communities Under Distinct Thermal and Geochemical Regimes in Axial and Off-Axis Sediments of Guaymas Basin. PMID:33643265
Temperature Stress Induces Shift From Co-Existence to Competition for Organic Carbon in Microalgae-Bacterial Photobioreactor Community - Enabling Continuous Production of Microalgal Biomass. PMID:33643237
Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species. PMID:33643235
Alteration of Gut Microbiota After Antibiotic Exposure in Finishing Swine. PMID:33643231
Protecting Intestinal Microenvironment Alleviates Acute Graft-Versus-Host Disease. PMID:33643058
Complex microbial communities inhabiting natural Cordyceps militaris and the habitat soil and their predicted functions. PMID:33638738
Bacterial Diversity in Pickled Cowpea (Vigna unguiculata [Linn.] Walp) as Determined by Illumina MiSeq Sequencing and Culture-Dependent Methods. PMID:33638668
Genetic relationships between feed efficiency and gut microbiome in pig lines selected for residual feed intake. PMID:33634901
Microbial communities developing within bulk sediments under fish carcasses on a tidal flat. PMID:33630911
A multi-omic investigation of male lower urinary tract symptoms: Potential role for JC virus. PMID:33630889
Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. PMID:33630888
Different distribution patterns of microorganisms between aquaculture pond sediment and water. PMID:33630250
Microbial succession and dynamics in meromictic Mono Lake, California. PMID:33629529
Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis. PMID:33628638
High abundance of sugar metabolisers in saliva of children with caries. PMID:33627735
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing. PMID:33627512
The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights. PMID:33624438
Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics. PMID:33621265
Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates. PMID:33621224
Dietary purslane (Portulaca oleracea L.) promotes the growth performance of broilers by modulation of gut microbiota. PMID:33620605
Shifts in Bacterial Diversity During the Spontaneous Fermentation of Maize Meal as Revealed by Targeted Amplicon Sequencing. PMID:33620555
Tomato roots secrete tomatine to modulate the bacterial assemblage of the rhizosphere. PMID:33619554
Effects of Arginine Supplementation on Serum Metabolites and the Rumen Bacterial Community of Sika Deer (Cervus nippon). PMID:33614769
Relative genetic diversity of the rare and endangered Agave shawii ssp. shawii and associated soil microbes within a southern California ecological preserve. PMID:33614006
Gut Microbiome of Children and Adolescents With Primary Sclerosing Cholangitis in Association With Ulcerative Colitis. PMID:33613519
Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events. PMID:33613505
Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra. PMID:33613495
Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts - A Genome-Centric Analysis. PMID:33613473
Gulf of Mexico blue hole harbors high levels of novel microbial lineages. PMID:33612832
"Sifarchaeota," a Novel Asgard Phylum from Costa Rican Sediment Capable of Polysaccharide Degradation and Anaerobic Methylotrophy. PMID:33608286
Elucidation of the MicroRNA Transcriptome in Western Corn Rootworm Reveals Its Dynamic and Evolutionary Complexity. PMID:33607298
The porcine corneal surface bacterial microbiome: A distinctive niche within the ocular surface. PMID:33606829
Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows. PMID:33606706
Ecosystem engineers drive differing microbial community composition in intertidal estuarine sediments. PMID:33606695
Exploring the faecal microbiome of the Eurasian nuthatch (Sitta europaea). PMID:33606040
Metagenomic Analysis of the Gut Microbiota of Wild Mice, a Newly Identified Reservoir of Campylobacter. PMID:33604305
Social behavior of musk deer during the mating season potentially influences the diversity of their gut microbiome. PMID:33604195
Ginsenoside Rb1, salvianolic acid B and their combination modulate gut microbiota and improve glucolipid metabolism in high-fat diet induced obese mice. PMID:33604164
Neoadjuvant nivolumab or nivolumab plus ipilimumab in operable non-small cell lung cancer: the phase 2 randomized NEOSTAR trial. PMID:33603241
Impact of early-life feeding on local intestinal microbiota and digestive system development in piglets. PMID:33603087
Fecal microbiota transplantation in HIV: A pilot placebo-controlled study. PMID:33602945
Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets. PMID:33602335
Amplicon-based skin microbiome profiles collected by tape stripping with different adhesive film dressings: a comparative study. PMID:33602131
Secondary bile acid ursodeoxycholic acid alters weight, the gut microbiota, and the bile acid pool in conventional mice. PMID:33600468
Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link. PMID:33597941
Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures. PMID:33597669
Mechanistic strategies of microbial communities regulating lignocellulose deconstruction in a UK salt marsh. PMID:33597033
The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis. PMID:33597028
Ethnic variability associating gut and oral microbiome with obesity in children. PMID:33596768
Restructuring the Gut Microbiota by Intermittent Fasting Lowers Blood Pressure. PMID:33596669
Advantage of 16S rRNA amplicon sequencing in Helicobacter pylori diagnosis. PMID:33596345
A DNA metabarcoding approach for recovering plankton communities from archived samples fixed in formalin. PMID:33596231
Signatures of vaginal microbiota by 16S rRNA gene: potential bio-geographical application in Chinese Han from three regions of China. PMID:33594458
Feedback mechanisms stabilise degraded turf algal systems at a CO2 seep site. PMID:33594188
Transition from unclassified Ktedonobacterales to Actinobacteria during amorphous silica precipitation in a quartzite cave environment. PMID:33594175
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce. PMID:33594001
High-Resolution Differentiation of Enteric Bacteria in Premature Infant Fecal Microbiomes Using a Novel rRNA Amplicon. PMID:33593974
Modulating gut microbiota in a mouse model of Graves' orbitopathy and its impact on induced disease. PMID:33593429
The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries. PMID:33593386
The nasal microbiome, nasal transcriptome, and pet sensitization. PMID:33592204
Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes. PMID:33592098
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Effects of long-acting, broad spectra anthelmintic treatments on the rumen microbial community compositions of grazing sheep. PMID:33589656
Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples. PMID:33589631
Hierarchical Microbial Functions Prediction by Graph Aggregated Embedding. PMID:33584804
Fermented Soybean Meal Replacement in the Diet of Lactating Holstein Dairy Cows: Modulated Rumen Fermentation and Ruminal Microflora. PMID:33584627
Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range. PMID:33584593
Neonicotinoid Seed Treatments Have Significant Non-target Effects on Phyllosphere and Soil Bacterial Communities. PMID:33584586
Modulation of human intestinal microbiota in a clinical trial by consumption of a β-D-glucan-enriched extract obtained from Lentinula edodes. PMID:33580297
Bacterial microbiota similarity between predators and prey in a blue tit trophic network. PMID:33580209
Localization of bacterial communities within gut compartments across Cephalotes turtle ants. PMID:33579688
Association of Maternal Microbiota and Diet in Cord Blood Cytokine and Immunoglobulin Profiles. PMID:33579027
Gut Microbiota Profile and Changes in Body Weight in Elderly Subjects with Overweight/Obesity and Metabolic Syndrome. PMID:33578731
Bioinformatic Tools and Guidelines for the Design of Fluorescence In Situ Hybridization Probes. PMID:33576981
Helicobacter pylori infection worsens impaired glucose regulation in high-fat diet mice in association with an altered gut microbiome and metabolome. PMID:33576881
Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing. PMID:33575567
Microbiota alteration at different stages in gastric lesion progression: a population-based study in Linqu, China. PMID:33575087
Influences of Seasonal Monsoons on the Taxonomic Composition and Diversity of Bacterial Community in the Eastern Tropical Indian Ocean. PMID:33574800
The effect of acute moderate-intensity exercise on the serum and fecal metabolomes and the gut microbiota of cross-country endurance athletes. PMID:33574413
Development of a novel model of cholecystectomy in subsequently ovariectomized mice and characterization of metabolic and gastrointestinal phenotypes: a pilot study. PMID:33573601
Stratification of Volunteers According to Flavanone Metabolite Excretion and Phase II Metabolism Profile after Single Doses of 'Pera' Orange and 'Moro' Blood Orange Juices. PMID:33573276
The Effects of Genetic Relatedness on the Preterm Infant Gut Microbiota. PMID:33572789
Unveiling the Bovine Epimural Microbiota Composition and Putative Function. PMID:33572291
Analysis of Bacterial Communities by 16S rRNA Gene Sequencing in a Melon-Producing Agro-environment. PMID:33570667
Syntrophotalea acetylenivorans sp. nov., a diazotrophic, acetylenotrophic anaerobe isolated from intertidal sediments. PMID:33570486
Functional rarity and evenness are key facets of biodiversity to boost multifunctionality. PMID:33568533
Tree rows in temperate agroforestry croplands alter the composition of soil bacterial communities. PMID:33566862
Using next-generation sequencing to develop a Shigella species threshold and profile faecal samples from suspected diarrhoea cases. PMID:33566277
The amphibian microbiome exhibits poor resilience following pathogen-induced disturbance. PMID:33564111
Direct Conversion of Food Waste Extract into Caproate: Metagenomics Assessment of Chain Elongation Process. PMID:33562834
Characterization of Bacterial Communities of Cold-Smoked Salmon during Storage. PMID:33562402
Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. PMID:33560417
Molecular analysis of the blood meals and bacterial communities of bed bugs (Cimex lectularius L.) to assess interactions with alternative hosts. PMID:33559752
Comparison of the fermentation and bacterial community in the colon of Hu sheep fed a low-grain, non-pelleted, or pelleted high-grain diet. PMID:33559720
The occurrence and ecology of microbial chain elongation of carboxylates in soils. PMID:33558687
Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota. PMID:33557825
Elevated gut microbiome abundance of Christensenellaceae, Porphyromonadaceae and Rikenellaceae is associated with reduced visceral adipose tissue and healthier metabolic profile in Italian elderly. PMID:33557667
The Dynamics of the Bacterial Community of the Photobioreactor-Cultivated Green Microalga Haematococcus lacustris during Stress-Induced Astaxanthin Accumulation. PMID:33557358
Highly Fermentable Fiber Alters Fecal Microbiota and Mitigates Swine Dysentery Induced by Brachyspira hyodysenteriae. PMID:33557345
Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences. PMID:33556964
Bacterial sepsis increases hippocampal fibrillar amyloid plaque load and neuroinflammation in a mouse model of Alzheimer's disease. PMID:33556539
Gut microbiota comparison of vaginally and cesarean born infants exclusively breastfed by mothers secreting α1-2 fucosylated oligosaccharides in breast milk. PMID:33556125
Metagenomic insights into the effect of sulfate on enhanced biological phosphorus removal. PMID:33555362
Identification of a novel interplay between intestinal bacteria and metabolites in Chinese patients with IgA nephropathy via integrated microbiome and metabolome approaches. PMID:33553325
Effects of Mesobiliverdin IXα-Enriched Microalgae Feed on Gut Health and Microbiota of Broilers. PMID:33553275
Impact of Processed Food (Canteen and Oil Wastes) on the Development of Black Soldier Fly (Hermetia illucens) Larvae and Their Gut Microbiome Functions. PMID:33552039
Database Mining to Unravel the Ecology of the Phylum Chloroflexi in Methanogenic Full Scale Bioreactors. PMID:33552017
Deletion of intestinal epithelial AMP-activated protein kinase alters distal colon permeability but not glucose homeostasis. PMID:33548500
Development of a robust protocol for the characterization of the pulmonary microbiota. PMID:33547364
Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes. PMID:33547359
Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort. PMID:33547327
Biofilms harbour Clostridioides difficile, serving as a reservoir for recurrent infection. PMID:33547298
The skin microbiome of Xenopus laevis and the effects of husbandry conditions. PMID:33546771
Dietary Rice Bran-Modified Human Gut Microbial Consortia Confers Protection against Colon Carcinogenesis Following Fecal Transfaunation. PMID:33546192
Spatial and seasonal variations of sediment bacterial communities in a river-bay system in South China. PMID:33544213
Dietary impact of a plant-derived microRNA on the gut microbiome. PMID:33542959
Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments. PMID:33542710
Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota. PMID:33542369
Adherent-invasive E. coli metabolism of propanediol in Crohn's disease regulates phagocytes to drive intestinal inflammation. PMID:33539767
Effects of Chronic Stress on the Fecal Microbiome of Malayan Pangolins (Manis javanica) Rescued from the Illegal Wildlife Trade. PMID:33537884
A high methionine and low folate diet alters glucose homeostasis and gut microbiome. PMID:33537464
rANOMALY: AmplicoN wOrkflow for Microbial community AnaLYsis. PMID:33537122
Physicochemical Characteristics and Microbial Communities in Gochujang, a Traditional Korean Fermented Hot Pepper Paste. PMID:33537020
Shift and Metabolic Potentials of Microbial Eukaryotic Communities Across the Full Depths of the Mariana Trench. PMID:33537012
Essential Role of IFN-γ in Regulating Gut Antimicrobial Peptides and Microbiota to Protect Against Alcohol-Induced Bacterial Translocation and Hepatic Inflammation in Mice. PMID:33536944
A Sarcina bacterium linked to lethal disease in sanctuary chimpanzees in Sierra Leone. PMID:33536429
AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology. PMID:33533410
Potentilla anserina L. developmental changes affect the rhizosphere prokaryotic community. PMID:33531629
Choosing source of microorganisms and processing technology for next generation beet bioinoculant. PMID:33531601
Evaluation of CRISPR Diversity in the Human Skin Microbiome for Personal Identification. PMID:33531409
Metagenomic Quantification of Genes with Internal Standards. PMID:33531401
Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture. PMID:33531396
Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactions. PMID:33531080
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. PMID:33526884
The Alteration of Intestinal Microbiota Profile and Immune Response in Epinephelus coioides during Pathogen Infection. PMID:33525589
Dynamics of the Apple Fruit Microbiome after Harvest and Implications for Fruit Quality. PMID:33525588
Impacts of Low Temperature and Ensiling Period on the Bacterial Community of Oat Silage by SMRT. PMID:33525587
Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance. PMID:33525047
Considerations for mosquito microbiome research from the Mosquito Microbiome Consortium. PMID:33522965
Changes in Bacterial Community Structure and Enriched Functional Bacteria Associated With Turfgrass Monoculture. PMID:33520947
Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity. PMID:33519764
Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea. PMID:33519743
Effect of Two Different Sugarcane Cultivars on Rhizosphere Bacterial Communities of Sugarcane and Soybean Upon Intercropping. PMID:33519733
Investigation of Physicochemical Indices and Microbial Communities in Termite Fungus-Combs. PMID:33519727
Dietary supplementation with berberine improves growth performance and modulates the composition and function of cecal microbiota in yellow-feathered broilers. PMID:33518062
Microbial community shifts reflect losses of native soil carbon with pyrogenic and fresh organic matter additions and are greatest in low-carbon soils. PMID:33514520
Simultaneous detection and ribotyping of Clostridioides difficile, and toxin gene detection directly on fecal samples. PMID:33514422
Microbial community structure in aquifers associated with arsenic: analysis of 16S rRNA and arsenite oxidase genes. PMID:33510973
Active phase prebiotic feeding alters gut microbiota, induces weight-independent alleviation of hepatic steatosis and serum cholesterol in high-fat diet-fed mice. PMID:33510856
Bradyrhizobium as the Only Rhizobial Inhabitant of Mung Bean (Vigna radiata) Nodules in Tropical Soils: A Strategy Based on Microbiome for Improving Biological Nitrogen Fixation Using Bio-Products. PMID:33510747
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. PMID:33510474
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region. PMID:33509296
Blood meal source and mixed blood-feeding influence gut bacterial community composition in Aedes aegypti. PMID:33509255
Evidence for Differentiation of Colon Tissue Microbiota in Patients with and without Postoperative Hirschsprung's Associated Enterocolitis: A Pilot Study. PMID:33505891
Caeca Microbial Variation in Broiler Chickens as a Result of Dietary Combinations Using Two Cereal Types, Supplementation of Crude Protein and Sodium Butyrate. PMID:33505386
Curing of Cocoa Beans: Fine-Scale Monitoring of the Starter Cultures Applied and Metabolomics of the Fermentation and Drying Steps. PMID:33505385
Characterization of Microbial Dynamics and Volatile Metabolome Changes During Fermentation of Chambourcin Hybrid Grapes From Two Pennsylvania Regions. PMID:33505380
Mercury methylation by metabolically versatile and cosmopolitan marine bacteria. PMID:33504941
Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome. PMID:33500005
Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae. PMID:33500003
Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons). PMID:33500001
Differential response of digesta- and mucosa-associated intestinal microbiota to dietary insect meal during the seawater phase of Atlantic salmon. PMID:33500000
Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities. PMID:33499994
Does solar irradiation drive community assembly of vulture plumage microbiotas? PMID:33499993
Inoculation with rumen fluid in early life accelerates the rumen microbial development and favours the weaning process in goats. PMID:33499992
Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics. PMID:33499987
Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons). PMID:33499985
Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species. PMID:33499982
The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding. PMID:33499980
Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis. PMID:33499978
Microbiota characterization of Exaiptasia diaphana from the Great Barrier Reef. PMID:33499977
Effects of aging on the skin and gill microbiota of farmed seabass and seabream. PMID:33499971
Antibiotic-induced alterations and repopulation dynamics of yellowtail kingfish microbiota. PMID:33499964
Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala. PMID:33499955
Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution. PMID:33499953
The fecal microbiota of wild and captive raptors. PMID:33499952
The gut microbiome of horses: current research on equine enteral microbiota and future perspectives. PMID:33499951
The microbiome of captive hamadryas baboons. PMID:33499948
An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range. PMID:33499947
Distinct microbiotas of anatomical gut regions display idiosyncratic seasonal variation in an avian folivore. PMID:33499946
Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major). PMID:33499943
Domesticated equine species and their derived hybrids differ in their fecal microbiota. PMID:33499942
Development of the duodenal, ileal, jejunal and caecal microbiota in chickens. PMID:33499941
Take care of the environment: housing conditions affect the interplay of nutritional interventions and intestinal microbiota in broiler chickens. PMID:33499936
Effect of the macroalgae Asparagopsis taxiformis on methane production and rumen microbiome assemblage. PMID:33499933
Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution. PMID:33499799
Bacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice. PMID:33499721
Helminth Interactions with Bacteria in the Host Gut Are Essential for Its Immunomodulatory Effect. PMID:33499240
Living Lithic and Sublithic Bacterial Communities in Namibian Drylands. PMID:33498742
Disentangling Responses of the Subsurface Microbiome to Wetland Status and Implications for Indicating Ecosystem Functions. PMID:33498486
Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels. PMID:33498349
Enrichment of marine manganese-oxidizing microorganisms using polycaprolactone as a solid organic substrate. PMID:33496920
The diversity and function of sourdough starter microbiomes. PMID:33496265
Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems. PMID:33495623
Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater. PMID:33495621
Dysbiosis of gut microbiota in Polish patients with ulcerative colitis: a pilot study. PMID:33495479
Mineral phosphorus drives glacier algal blooms on the Greenland Ice Sheet. PMID:33495440
Prokaryotic Diversity of the Composting Thermophilic Phase: The Case of Ground Coffee Compost. PMID:33494462
Dynamics and Complexity of Dark Fermentation Microbial Communities Producing Hydrogen From Sugar Beet Molasses in Continuously Operating Packed Bed Reactors. PMID:33488554
Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease. PMID:33488550
Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert. PMID:33488547
Correlation of Salmonella enterica and Listeria monocytogenes in Irrigation Water to Environmental Factors, Fecal Indicators, and Bacterial Communities. PMID:33488530
Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort. PMID:33488518
Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond Earth. PMID:33487169
Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas. PMID:33485388
Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria. PMID:33482928
Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing. PMID:33482922
Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale. PMID:33482913
Comparison and interpretation of characteristics of Rhizosphere microbiomes of three blueberry varieties. PMID:33482726
The role of host promiscuity in the invasion process of a seaweed holobiont. PMID:33479490
Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants. PMID:33479274
Microbial dynamics of elevated carbon flux in the open ocean's abyss. PMID:33479184
Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi. PMID:33475800
Compensatory intestinal immunoglobulin response after vancomycin treatment in humans. PMID:33475461
Taxonomic and functional analyses reveal existence of virulence and antibiotic resistance genes in beach sand bacterial populations. PMID:33474608
Comparison of Blood Bacterial Communities in Periodontal Health and Periodontal Disease. PMID:33469518
Phylogenetic Distribution of Plastic-Degrading Microorganisms. PMID:33468707
Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development. PMID:33468687
Linking Gut Microbiome and Lipid Metabolism: Moving beyond Associations. PMID:33467644
Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental Exposures. PMID:33467528
Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens. PMID:33467169
Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. PMID:33467086
Hepatic steatosis relates to gastrointestinal microbiota changes in obese girls with polycystic ovary syndrome. PMID:33465100
Plant Compartments and Developmental Stages Modulate the Balance between Niche-Based and Neutral Processes in Soybean Microbiome. PMID:33462700
Large-scale association analyses identify host factors influencing human gut microbiome composition. PMID:33462485
Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. PMID:33462482
Freshwater monitoring by nanopore sequencing. PMID:33461660
Induced secretion system mutation alters rhizosphere bacterial composition in Sorghum bicolor (L.) Moench. PMID:33459875
Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway. PMID:33452484
Bodo saltans (Kinetoplastida) is dependent on a novel Paracaedibacter-like endosymbiont that possesses multiple putative toxin-antitoxin systems. PMID:33452479
Mesopelagic microbial carbon production correlates with diversity across different marine particle fractions. PMID:33452475
PD-1 blockade exacerbates Mycobacterium tuberculosis infection in rhesus macaques. PMID:33452107
Metals Alter Membership but Not Diversity of a Headwater Stream Microbiome. PMID:33452033
Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds. PMID:33452030
Colonization of Naive Roots from Populus tremula × alba Involves Successive Waves of Fungi and Bacteria with Different Trophic Abilities. PMID:33452025
Modeling transfer of vaginal microbiota from mother to infant in early life. PMID:33448927
Precision modification of the human gut microbiota targeting surface-associated proteins. PMID:33446697
Aberrant type 1 immunity drives susceptibility to mucosal fungal infections. PMID:33446526
Plant Health and Sound Vibration: Analyzing Implications of the Microbiome in Grape Wine Leaves. PMID:33445765
Unraveling Mechanisms and Impact of Microbial Recruitment on Oilseed Rape (Brassica napus L.) and the Rhizosphere Mediated by Plant Growth-Promoting Rhizobacteria. PMID:33445684
Assessment of clinical and microbiota responses to fecal microbial transplantation in adult horses with diarrhea. PMID:33444319
Microbial consortia capable of reducing selenate in the presence of nitrate enriched from coalmining-impacted environments. PMID:33443632
Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia). PMID:33441848
The spatial variation of soil bacterial community assembly processes affects the accuracy of source tracking in ten major Chinese cities. PMID:33439456
Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern Brazil. PMID:33437021
Individual fate and gut microbiome composition in the European wild rabbit (Oryctolagus cuniculus). PMID:33436896
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition. PMID:33436515
Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community. PMID:33436509
Low-dosage ozonation in gas-phase biofilter promotes community diversity and robustness. PMID:33436067
Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. PMID:33434266
The Effect of Two Dietary Protein Sources on Water Quality and the Aquatic Microbial Communities in Marron (Cherax cainii) Culture. PMID:33432372
Metabarcoding profiling of microbial diversity associated with trout fish farming. PMID:33432095
Gut microbiota dynamics in carnivorous European seabass (Dicentrarchus labrax) fed plant-based diets. PMID:33432059
Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera. PMID:33430351
Enzyme biotechnology development for treating polymers in hydraulic fracturing operations. PMID:33428324
Impaired host response and the presence of Acinetobacter baumannii in the serum microbiome of type-II diabetic patients. PMID:33426512
Emerging frontiers in human milk microbiome research and suggested primers for 16S rRNA gene analysis. PMID:33425245
Dietary Lipid:Protein Ratio and n-3 Long-Chain Polyunsaturated Fatty Acids Alters the Gut Microbiome of Atlantic Salmon Under Hypoxic and Normoxic Conditions. PMID:33424792
Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities. PMID:33424787
The Effect of Xylooligosaccharide, Xylan, and Whole Wheat Bran on the Human Gut Bacteria. PMID:33424778
Spatiotemporal Analysis of the Water and Sediment Nile Microbial Community Along an Urban Metropolis. PMID:33420624
Particulate matter emission sources and meteorological parameters combine to shape the airborne bacteria communities in the Ligurian coast, Italy. PMID:33420408
Potential use of molecular and structural characterization of the gut bacterial community for postmortem interval estimation in Sprague Dawley rats. PMID:33420339
Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance. PMID:33420064
Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions. PMID:33419736
Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning. PMID:33419343
Comparative Gut Microbiome Differences between Ferric Citrate and Calcium Carbonate Phosphate Binders in Patients with End-Stage Kidney Disease. PMID:33419265
Application of Ligilactobacillus salivarius CECT5713 to Achieve Term Pregnancies in Women with Repetitive Abortion or Infertility of Unknown Origin by Microbiological and Immunological Modulation of the Vaginal Ecosystem. PMID:33419054
Microbiota associated with Mollitrichosiphum aphids (Hemiptera: Aphididae: Greenideinae): diversity, host species specificity and phylosymbiosis. PMID:33415800
Distribution and comparison of bacterial communities in HVAC systems of two university buildings: Implications for indoor air quality and public health. PMID:33415530
Urbanization Constrains Skin Bacterial Phylogenetic Diversity in Wild Fish Populations and Correlates with the Proliferation of Aeromonads. PMID:33415385
Evaluating High-Throughput Sequencing Data of Microalgae Living in Melting Snow: Improvements and Limitations1. PMID:33414851
Cultivation-Independent Analysis of the Bacterial Community Associated With the Calcareous Sponge Clathrina clathrus and Isolation of Poriferisphaera corsica Gen. Nov., Sp. Nov., Belonging to the Barely Studied Class Phycisphaerae in the Phylum Planctomycetes. PMID:33414774
Antibiotic Treatment for Chronic Rhinosinusitis: Prescription Patterns and Associations With Patient Outcome and the Sinus Microbiota. PMID:33414772
Bacterial Diversity Profiling around the Orca Seamount in the Bransfield Strait, Antarctica, Based on 16S rRNA Gene Amplicon Sequences. PMID:33414311
Effect of host breeds on gut microbiome and serum metabolome in meat rabbits. PMID:33413361
Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD). PMID:33412165
Shift of Maternal Gut Microbiota of Tibetan Antelope (Pantholops hodgsonii) During the Periparturition Period. PMID:33410953
Specificity of assemblage, not fungal partner species, explains mycorrhizal partnerships of mycoheterotrophic Burmannia plants. PMID:33408367
Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly. PMID:33408228
Combined Lycium babarum polysaccharides and C-phycocyanin increase gastric Bifidobacterium relative abundance and protect against gastric ulcer caused by aspirin in rats. PMID:33407626
Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function. PMID:33407112
Bacterial Diversity Analysis and Evaluation Proteins Hydrolysis During the Acid Whey and Fish Waste Fermentation. PMID:33406784
Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types. PMID:33406075
Biosynthesis and prebiotic activity of a linear levan from a new Paenibacillus isolate. PMID:33404835
Gut microbiome analysis as a predictive marker for the gastric cancer patients. PMID:33404833
Host-Associated Quantitative Abundance Profiling Reveals the Microbial Load Variation of Root Microbiome. PMID:33404537
Heritable Gut Microbiome Associated with Salmonella enterica Serovar Pullorum Infection in Chickens. PMID:33402350
The Effect of an Adsorbent Matrix on Recovery of Microorganisms from Hydrocarbon-Contaminated Groundwater. PMID:33401442
Coastal Bacterial Community Response to Glacier Melting in the Western Antarctic Peninsula. PMID:33401391
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. PMID:33398100
Longitudinal dynamics of gut bacteriome, mycobiome and virome after fecal microbiota transplantation in graft-versus-host disease. PMID:33397897
Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic. PMID:33397511
Long-Term Impact of Suppressive Antibiotic Therapy on Intestinal Microbiota. PMID:33396759
Influence of Acid Blockade on the Aerodigestive Tract Microbiome in Children With Cystic Fibrosis. PMID:33394582
Microbiota Features Associated With a High-Fat/Low-Fiber Diet in Healthy Adults. PMID:33392236
Active Anaerobic Archaeal Methanotrophs in Recently Emerged Cold Seeps of Northern South China Sea. PMID:33391242
Probiotic Lactobacillus rhamnosus GG Promotes Mouse Gut Microbiota Diversity and T Cell Differentiation. PMID:33391230
Effect of Temperature on Acetate Mineralization Kinetics and Microbial Community Composition in a Hydrocarbon-Affected Microbial Community During a Shift From Oxic to Sulfidogenic Conditions. PMID:33391229
Comparing the Bacterial Community in the Gastrointestinal Tracts Between Growth-Retarded and Normal Yaks on the Qinghai-Tibetan Plateau. PMID:33391217
Extensive Microbial Processing of Polysaccharides in the South Pacific Gyre via Selfish Uptake and Extracellular Hydrolysis. PMID:33391202
The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra. PMID:33391192
Nasal bacterial microbiota during an outbreak of equine herpesvirus 1 at a farm in southern Ontario. PMID:33390647
Phosphate-Arsenic Interactions in Halophilic Microorganisms of the Microbial Mat from Laguna Tebenquiche: from the Microenvironment to the Genomes. PMID:33388944
A Pilot Study of the Effect of Deployment on the Gut Microbiome and Traveler's Diarrhea Susceptibility. PMID:33384968
Alterations in Urobiome in Patients With Bladder Cancer and Implications for Clinical Outcome: A Single-Institution Study. PMID:33384966
Use of next generation sequencing to compare simple habitat and species level differences in the gut microbiota of an invasive and native freshwater fish species. PMID:33384896
Comparative Analysis of Bacterial Communities in Lutzomyia ayacuchensis Populations with Different Vector Competence to Leishmania Parasites in Ecuador and Peru. PMID:33383851
Rock Surface Fungi in Deep Continental Biosphere-Exploration of Microbial Community Formation with Subsurface In Situ Biofilm Trap. PMID:33383728
Changes in IgA-targeted microbiota following fecal transplantation for recurrent Clostridioides difficile infection. PMID:33382360
Study on the Diversity of Fungal and Bacterial Communities in Continuous Cropping Fields of Chinese Chives (Allium tuberosum). PMID:33381549
Improved High-Throughput Sequencing of the Human Oral Microbiome: From Illumina to PacBio. PMID:33381248
Gut Microbial Dysbiosis and Plasma Metabolic Profile in Individuals With Vitiligo. PMID:33381090
Microbial Signatures in Deep CO2-Saturated Miocene Sediments of the Active Hartoušov Mofette System (NW Czech Republic). PMID:33381087
Isolation and characterization of fast-growing green snow bacteria from coastal East Antarctica. PMID:33377317
Characterization of Bacterial Microbiota Composition along the Gastrointestinal Tract in Rabbits. PMID:33375259
Anaerobic Carbon Monoxide Uptake by Microbial Communities in Volcanic Deposits at Different Stages of Successional Development on O-yama Volcano, Miyake-jima, Japan. PMID:33375160
Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions. PMID:33375098
Diversity and Colonization Strategies of Endolithic Cyanobacteria in the Cold Mountain Desert of Pamir. PMID:33375046
Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos). PMID:33375015
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota. PMID:33373099
Methane-Oxidizing Communities in Lichen-Dominated Forested Tundra Are Composed Exclusively of High-Affinity USCα Methanotrophs. PMID:33371270
Consistent patterns in 16S and 18S microbial diversity from the shells of the common and widespread red-eared slider turtle (Trachemys scripta). PMID:33370423
Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte. PMID:33369710
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM-I-4785. PMID:33369186
Gut Microbiota of Young Children Living in Four Brazilian Cities. PMID:33365290
Diesel-born organosulfur compounds stimulate community re-structuring in a diesel-biodesulfurizing consortium. PMID:33365264
Discovery of Novel Biosynthetic Gene Cluster Diversity From a Soil Metagenomic Library. PMID:33365020
Six-Week Exercise Training With Dietary Restriction Improves Central Hemodynamics Associated With Altered Gut Microbiota in Adolescents With Obesity. PMID:33365012
Synthetic Sequencing Standards: A Guide to Database Choice for Rumen Microbiota Amplicon Sequencing Analysis. PMID:33363527
The Gut Microbiome Is Associated With Therapeutic Responses and Toxicities of Neoadjuvant Chemoradiotherapy in Rectal Cancer Patients-A Pilot Study. PMID:33363048
Description of the microbiota in epidermal mucus and skin of sharks (Ginglymostoma cirratum and Negaprion brevirostris) and one stingray (Hypanus americanus). PMID:33362953
Microbial Diversity of Pinnacle and Conical Microbial Mats in the Perennially Ice-Covered Lake Untersee, East Antarctica. PMID:33362751
Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium. PMID:33361324
Isolation of SAR11 Marine Bacteria from Cryopreserved Seawater. PMID:33361323
Diversity and composition of microbiota during fermentation of traditional Nuodeng ham. PMID:33355893
Recovery in methanotrophic activity does not reflect on the methane-driven interaction network after peat mining. PMID:33355115
Effect of dietary oil from Camelina sativa on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream (Sparus aurata). PMID:33354421
The Role of Symbiotic Microorganisms, Nutrient Uptake and Rhizosphere Bacterial Community in Response of Pea (Pisum sativum L.) Genotypes to Elevated Al Concentrations in Soil. PMID:33353122
Comparative Microbiome and Metabolome Analyses of the Marine Tunicate Ciona intestinalis from Native and Invaded Habitats. PMID:33348696
Microbial Metabolism of Theaflavin-3,3'-digallate and Its Gut Microbiota Composition Modulatory Effects. PMID:33347309
Social isolation alters behavior, the gut-immune-brain axis, and neurochemical circuits in male and female prairie voles. PMID:33344730
Comprehensive Survey of the Litter Bacterial Communities in Commercial Turkey Farms. PMID:33344533
Ixodes scapularis microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing. PMID:33344080
The Composition and Predictive Function of the Fecal Microbiota Differ Between Young and Adult Donkeys. PMID:33343537
How do Planktonic Particle Collection Methods Affect Bacterial Diversity Estimates and Community Composition in Oligo-, Meso- and Eutrophic Lakes? PMID:33343534
Antibiotic Resistance Genes and Bacterial Communities of Farmed Rainbow Trout Fillets (Oncorhynchus mykiss). PMID:33343530
Microbial community composition in the rhizosphere of Larix decidua under different light regimes with additional focus on methane cycling microorganisms. PMID:33339837
Genetic structure and symbiotic profile of worldwide natural populations of the Mediterranean fruit fly, Ceratitis capitata. PMID:33339507
Essential Oils as Alternative Biocides for the Preservation of Waterlogged Archaeological Wood. PMID:33339447
Altered tissue specialized pro-resolving mediators in chronic rhinosinusitis. PMID:33338738
Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities. PMID:33335606
Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea). PMID:33335519
Organism body size structures the soil microbial and nematode community assembly at a continental and global scale. PMID:33335105
An association between chronic widespread pain and the gut microbiome. PMID:33331911
Early Life Inoculation With Adult-Derived Microbiota Accelerates Maturation of Intestinal Microbiota and Enhances NK Cell Activation in Broiler Chickens. PMID:33330708
Planctomycetes as Host-Associated Bacteria: A Perspective That Holds Promise for Their Future Isolations, by Mimicking Their Native Environmental Niches in Clinical Microbiology Laboratories. PMID:33330115
Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results. PMID:33329686
Baseline Gut Microbiota Composition Is Associated With Schistosoma mansoni Infection Burden in Rodent Models. PMID:33329584
Enhancing Phenol Conversion Rates in Saline Anaerobic Membrane Bioreactor Using Acetate and Butyrate as Additional Carbon and Energy Sources. PMID:33329495
Effect of Menopausal Hormone Therapy on the Vaginal Microbiota and Genitourinary Syndrome of Menopause in Chinese Menopausal Women. PMID:33329470
Changes in Activity and Community Composition Shape Bacterial Responses to Size-Fractionated Marine DOM. PMID:33329457
Exploring the Microbiota of East African Indigenous Leafy Greens for Plant Growth, Health, and Resilience. PMID:33329455
Rhizosphere Bacterial Community Response to Continuous Cropping of Tibetan Barley. PMID:33329420
Gestational Diabetes Is Uniquely Associated With Altered Early Seeding of the Infant Gut Microbiota. PMID:33329403
Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents. PMID:33328652
Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota. PMID:33328347
Exopolysaccharide Producing Bifidobacterium animalis subsp. lactis Strains Modify the Intestinal Microbiota and the Plasmatic Cytokine Levels of BALB/c Mice According to the Type of Polymer Synthesized. PMID:33324384
Spatiotemporal Dynamics of Vibrio Communities and Abundance in Dongshan Bay, South of China. PMID:33324364
The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity Regimes. PMID:33324363
Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems. PMID:33324353
Not That Close to Mommy: Horizontal Transmission Seeds the Microbiome Associated with the Marine Sponge Plakina cyanorosea. PMID:33322780
Influence of Lab Adapted Natural Diet and Microbiota on Life History and Metabolic Phenotype of Drosophila melanogaster. PMID:33322411
Microbiome Analysis from Paired Mucosal and Fecal Samples of a Colorectal Cancer Biobank. PMID:33317136
Hydrocarbon-Degrading Bacteria Found Tightly Associated with the 50-70 μm Cell-Size Population of Eukaryotic Phytoplankton in Surface Waters of a Northeast Atlantic Region. PMID:33317100
The Limits and Avoidance of Biases in Metagenomic Analyses of Human Fecal Microbiota. PMID:33317070
Food Resource Sharing of Alder Leaf Beetle Specialists (Coleoptera: Chrysomelidae) as Potential Insect-Plant Interface for Horizontal Transmission of Endosymbionts. PMID:33315074
Discovery and Surveillance of Tick-Borne Pathogens. PMID:33313662
Effects of dietary energy levels on rumen fermentation, microbiota, and gastrointestinal morphology in growing ewes. PMID:33312546
High-throughput sequencing-based analysis of fungal diversity and taste quality evaluation of Douchi, a traditional fermented food. PMID:33312545
A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats. PMID:33312120
Differential longitudinal establishment of human fecal bacterial communities in germ-free porcine and murine models. PMID:33311550
Using metacommunity ecology to understand environmental metabolomes. PMID:33311510
Arid Ecosystem Vegetation Canopy-Gap Dichotomy: Influence on Soil Microbial Composition and Nutrient Cycling Functional Potential. PMID:33310716
Effects of Chemical and Mechanical Lysis on Microbial DNA Yield, Integrity, and Downstream Amplicon Sequencing of Rumen Bacteria and Protozoa. PMID:33304329
Competitive Exclusion Prevents Colonization and Compartmentalization Reduces Transmission of ESBL-Producing Escherichia coli in Broilers. PMID:33304325
In situ modelling of biofilm formation in a hydrothermal spring cave. PMID:33303927
Siderite-based anaerobic iron cycle driven by autotrophic thermophilic microbial consortium. PMID:33303863
Probiotic Lactobacillus fermentum strain JDFM216 improves cognitive behavior and modulates immune response with gut microbiota. PMID:33303803
A core microbiota dominates a rich microbial diversity in the bovine udder and may indicate presence of dysbiosis. PMID:33303769
Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota". PMID:33301463
Application of next generation sequencing for detection of protozoan pathogens in shellfish. PMID:33299933
Caulerpa lentillifera (Sea Grapes) Improves Cardiovascular and Metabolic Health of Rats with Diet-Induced Metabolic Syndrome. PMID:33297424
Fine-Scale Patterns of Genetic Structure in the Host Plant Chamaecrista fasciculata (Fabaceae) and Its Nodulating Rhizobia Symbionts. PMID:33297297
Metabolic impact of persistent organic pollutants on gut microbiota. PMID:33295235
Cell sorting reveals few novel prokaryote and photosynthetic picoeukaryote associations in the oligotrophic ocean. PMID:33295132
Distinct Features of Gut Microbiota in High-Altitude Tibetan and Middle-Altitude Han Hypertensive Patients. PMID:33294219
Microbe-set enrichment analysis facilitates functional interpretation of microbiome profiling data. PMID:33293650
Metagenomic analysis reveals rapid development of soil biota on fresh volcanic ash. PMID:33293603
Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson's Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder. PMID:33293403
Adaptive Immunity and Pathogenesis of Diabetes: Insights Provided by the α4-Integrin Deficient NOD Mouse. PMID:33291571
The Influence of pCO2-Driven Ocean Acidification on Open Ocean Bacterial Communities during A Short-Term Microcosm Experiment in the Eastern Tropical South Pacific (ETSP) off Northern Chile. PMID:33291533
Stratification of athletes' gut microbiota: the multifaceted hubs associated with dietary factors, physical characteristics and performance. PMID:33289609
Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica. PMID:33287243
Impact of Inoculum Type on the Microbial Community and Power Performance of Urine-Fed Microbial Fuel Cells. PMID:33287204
Translational adaptation to heat stress is mediated by RNA 5-methylcytosine in Caenorhabditis elegans. PMID:33283887
Determination of fungal diversity of acidic gruel by using culture-dependent and independent methods. PMID:33282235
The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw Succession. PMID:33281795
Exploring the Influence of Signal Molecules on Marine Biofilms Development. PMID:33281767
Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life. PMID:33277514
Complex subsurface hydrothermal fluid mixing at a submarine arc volcano supports distinct and highly diverse microbial communities. PMID:33277434
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data. PMID:33275647
Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems. PMID:33275130
Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community. PMID:33273721
Glioma and temozolomide induced alterations in gut microbiome. PMID:33273497
Gut microbiome as a response marker for pancreatic enzyme replacement therapy in a porcine model of exocrine pancreas insufficiency. PMID:33272255
Synthetic Bacterial Community of Duckweed: A Simple and Stable System to Study Plant-microbe Interactions. PMID:33268659
CoMA - an intuitive and user-friendly pipeline for amplicon-sequencing data analysis. PMID:33264369
The Lung Microbiome of Three Young Brazilian Patients With Cystic Fibrosis Colonized by Fungi. PMID:33262957
Effects of Sex and Diet on Gut Microbiota of Farmland-Dependent Wintering Birds. PMID:33262746
Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes. PMID:33262743
Aeolian Prokaryotic Communities of the Global Dust Belt Over the Red Sea. PMID:33262740
Space and Vine Cultivar Interact to Determine the Arbuscular Mycorrhizal Fungal Community Composition. PMID:33260901
Genomic Characterization of a Novel Tenericutes Bacterium from Deep-Sea Holothurian Intestine. PMID:33260795
A Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function. PMID:33260576
Characterization of a Murine Model for Encephalitozoon hellem Infection after Dexamethasone Immunosuppression. PMID:33260440
Soil bacterial community structures in relation to different oil palm management practices. PMID:33257691
Enrichment of Hydrogen Oxidizing Bacteria from High Temperature and Salinity Environments. PMID:33257312
Severe Corrosion of Carbon Steel in Oil Field Produced Water Can Be Linked to Methanogenic Archaea Containing a Special Type of [NiFe] Hydrogenase. PMID:33257309
Effect of diet and intestinal AhR expression on fecal microbiome and metabolomic profiles. PMID:33256731
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology. PMID:33252655
Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin. PMID:33250870
Microbial biosurfactant research: time to improve the rigour in the reporting of synthesis, functional characterization and process development. PMID:33249753
Methanogen Abundance Thresholds Capable of Differentiating In Vitro Methane Production in Human Stool Samples. PMID:33247793
Wild black bears harbor simple gut microbial communities with little difference between the jejunum and colon. PMID:33247155
Clinical efficacy of spray-based heat-treated lactobacilli in canine atopic dermatitis: a preliminary, open-label, uncontrolled study. PMID:33245188
Influence of Environmental Stressors on the Microbiota of Zebra Mussels (Dreissena polymorpha). PMID:33244619
Depthwise microbiome and isotopic profiling of a moderately saline microbial mat in a solar saltern. PMID:33244085
In vivo Microbiome Profiling of the Luminal and Mucosal Surface of the Duodenum Using a Cannulated Yearling Bovine Model. PMID:33240966
Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome. PMID:33240580
High-Throughput Cultivation for the Selective Isolation of Acidobacteria From Termite Nests. PMID:33240253
Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific. PMID:33240232
Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research. PMID:33240229
The gut microbiota is associated with immune cell dynamics in humans. PMID:33239790
Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata. PMID:33237941
Rice SST Variation Shapes the Rhizosphere Bacterial Community, Conferring Tolerance to Salt Stress through Regulating Soil Metabolites. PMID:33234605
Mass Occurrence of Anatoxin-a- and Dihydroanatoxin-a-Producing Tychonema sp. in Mesotrophic Reservoir Mandichosee (River Lech, Germany) as a Cause of Neurotoxicosis in Dogs. PMID:33233760
High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters. PMID:33233570
Phosphorus Reduces Negative Effects of Nitrogen Addition on Soil Microbial Communities and Functions. PMID:33233486
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus. PMID:33232581
Assessment of fungal diversity in soil rhizosphere associated with Rhazya stricta and some desert plants using metagenomics. PMID:33231748
Bacterial Communities of Ballan Wrasse (Labrus bergylta) Eggs at a Commercial Marine Hatchery. PMID:33230621
RepeatFS: a file system providing reproducibility through provenance and automation. PMID:33230554
VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition. PMID:33228810
Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout. PMID:33228584
A low-cost pipeline for soil microbiome profiling. PMID:33225533
Ozone Decreased Enteric Methane Production by 20% in an in vitro Rumen Fermentation System. PMID:33224114
Dynamics of the bacterial gut microbiota during controlled human infection with Necator americanus larvae. PMID:33222610
Bacterial colonization of explanted non-endocarditis cardiac valves: evidence and characterization of the valvular microbiome. PMID:33221915
Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont "Candidatus Pinguicoccus supinus" sp. nov. PMID:33219271
FAM3D is essential for colon homeostasis and host defense against inflammation associated carcinogenesis. PMID:33219235
Next-Generation Sequencing as a Tool to Detect Vaginal Microbiota Disturbances during Pregnancy. PMID:33217908
EukRef-excavates: seven curated SSU ribosomal RNA gene databases. PMID:33216898
The difference between cellulolytic 'culturomes' and microbiomes inhabiting two contrasting soil types. PMID:33216789
Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery. PMID:33213511
Comparative analysis of gut microbiota diversity in endangered, economical, and common freshwater mussels using 16S rRNA gene sequencing. PMID:33209266
Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. PMID:33208892
Data integration for prediction of weight loss in randomized controlled dietary trials. PMID:33208769
Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease. PMID:33208745
Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition. PMID:33208515
Assessment of In Vitro and In Silico Protocols for Sequence-Based Characterization of the Human Vaginal Microbiome. PMID:33208514
Metabolic Responses to Butyrate Supplementation in LF- and HF-Fed Mice Are Cohort-Dependent and Associated with Changes in Composition and Function of the Gut Microbiota. PMID:33207675
Comprehensive genome analyses of Sellimonas intestinalis, a potential biomarker of homeostasis gut recovery. PMID:33206037
Ureteral Stent Microbiota Is Associated with Patient Comorbidities but Not Antibiotic Exposure. PMID:33205072
The sad weekend: A perilous North American tradition. PMID:33204899
The Impact of Air Pollution on Intestinal Microbiome of Asthmatic Children: A Panel Study. PMID:33204702
Energy depletion and opportunistic microbial colonisation in white syndrome lesions from corals across the Indo-Pacific. PMID:33203914
Changes in the diversity and composition of gut microbiota in pigeon squabs infected with Trichomonas gallinae. PMID:33203893
The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study. PMID:33203758
Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration. PMID:33203691
Comparative study of the bacterial communities throughout the gastrointestinal tract in two beef cattle breeds. PMID:33201274
Bio-fertilizer and rotten straw amendments alter the rhizosphere bacterial community and increase oat productivity in a saline-alkaline environment. PMID:33199781
Grazing pressure-induced shift in planktonic bacterial communities with the dominance of acIII-A1 actinobacterial lineage in soda pans. PMID:33199773
Association of gut microbiota with metabolism in juvenile Atlantic salmon. PMID:33198805
Integrated-omics endotyping of infants with rhinovirus bronchiolitis and risk of childhood asthma. PMID:33197460
Increasing the Sustainability of Maize Grain Production by Using Arbuscular Mycorrhizal Fungi Does Not Affect the Rumen of Dairy Cattle (Bos taurus) and Buffalo (Bubalus bubalis). PMID:33195529
Microbiome Profiling Reveals Gut Dysbiosis in the Metabotropic Glutamate Receptor 5 Knockout Mouse Model of Schizophrenia. PMID:33195226
The invasive red-eared slider turtle is more successful than the native Chinese three-keeled pond turtle: evidence from the gut microbiota. PMID:33194431
Viable bacterial communities on hospital window components in patient rooms. PMID:33194331
Effect of Heat-Inactivated Compound Probiotics on Growth Performance, Plasma Biochemical Indices, and Cecal Microbiome in Yellow-Feathered Broilers. PMID:33193234
Preserving Microbial Community Integrity in Oilfield Produced Water. PMID:33193212
Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities. PMID:33193201
Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments. PMID:33193193
Soil-Derived Inocula Enhance Methane Production and Counteract Common Process Failures During Anaerobic Digestion. PMID:33193175
Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization. PMID:33193166
Diverged and Active Partitiviruses in Lichen. PMID:33193146
Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline. PMID:33193131
Evaluation of an Immunomodulatory Probiotic Intervention for Veterans With Co-occurring Mild Traumatic Brain Injury and Posttraumatic Stress Disorder: A Pilot Study. PMID:33192959
Urine Microbe-Derived Extracellular Vesicles in Children With Asthma. PMID:33191678
Maternal Diet Shapes the Breast Milk Microbiota Composition and Diversity: Impact of Mode of Delivery and Antibiotic Exposure. PMID:33188413
Effects of set cathode potentials on microbial electrosynthesis system performance and biocathode methanogen function at a metatranscriptional level. PMID:33188217
Recovery and Community Succession of the Zostera marina Rhizobiome after Transplantation. PMID:33187993
Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches. PMID:33187490
Microbial Shifts Following Five Years of Cover Cropping and Tillage Practices in Fertile Agroecosystems. PMID:33187276
Culturing-Enriched Metabarcoding Analysis of the Oryctes rhinoceros Gut Microbiome. PMID:33187223
Maternal Linoleic Acid Overconsumption Alters Offspring Gut and Adipose Tissue Homeostasis in Young but Not Older Adult Rats. PMID:33187208
Metagenomic assessment of the global diversity and distribution of bacteria and fungi. PMID:33185929
Contrasting effects of Rhizophagus irregularis versus bacterial and fungal seed endophytes on Trifolium repens plant-soil feedback. PMID:33185700
Unravelling the importance of the eukaryotic and bacterial communities and their relationship with Legionella spp. ecology in cooling towers: a complex network. PMID:33183356
Bacterial Respiration Used as a Proxy to Evaluate the Bacterial Load in Cooling Towers. PMID:33182471
Differential Responses to Dietary Protein and Carbohydrate Ratio on Gut Microbiome in Obese vs. Lean Cats. PMID:33178173
Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract. PMID:33178171
Transcriptome and translatome co-evolution in mammals. PMID:33177713
Microbiome diversity predicts surgical success in patients with rectovaginal fistula. PMID:33175227
The European Nucleotide Archive in 2020. PMID:33175160
Microbial diversity and structure in the gastrointestinal tracts of two stranded short-finned pilot whales (Globicephala macrorhynchus) and a pygmy sperm whale (Kogia breviceps). PMID:33174288
Developmental differences in the intestinal microbiota of Chinese 1-year-old infants and 4-year-old children. PMID:33173227
Chemical Profiling Provides Insights into the Metabolic Machinery of Hydrocarbon-Degrading Deep-Sea Microbes. PMID:33172970
Bile Acid Signal Molecules Associate Temporally with Respiratory Inflammation and Microbiome Signatures in Clinically Stable Cystic Fibrosis Patients. PMID:33172004
Calcium salts of long-chain fatty acids from linseed oil decrease methane production by altering the rumen microbiome in vitro. PMID:33170886
Weak Influence of Paleoenvironmental Conditions on the Subsurface Biosphere of Lake Ohrid over the Last 515 ka. PMID:33167482
Effect of gut microbiome on minor complications after a colonoscopy. PMID:33166441
Distinct Stage Changes in Early-Life Colonization and Acquisition of the Gut Microbiota and Its Correlations With Volatile Fatty Acids in Goat Kids. PMID:33162961
Inoculation With the Plant-Growth-Promoting Rhizobacterium Pseudomonas fluorescens LBUM677 Impacts the Rhizosphere Microbiome of Three Oilseed Crops. PMID:33162951
Implications of increasing Atlantic influence for Arctic microbial community structure. PMID:33159130
Manipulation of Saliva-Derived Microcosm Biofilms To Resemble Dysbiotic Subgingival Microbiota. PMID:33158898
Alternative stable states in the intestinal ecosystem: proof of concept in a rat model and a perspective of therapeutic implications. PMID:33158453
A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes. PMID:33158252
Impact of the Post-Transplant Period and Lifestyle Diseases on Human Gut Microbiota in Kidney Graft Recipients. PMID:33158078
Aging Induces Profound Changes in sncRNA in Rat Sperm and These Changes Are Modified by Perinatal Exposure to Environmental Flame Retardant. PMID:33158036
Myelin as a regulator of development of the microbiota-gut-brain axis. PMID:33157256
Inflammatory Bowel Disease Outcomes Following Fecal Microbiota Transplantation for Recurrent C. difficile Infection. PMID:33155639
A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo. PMID:33154444
Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile. PMID:33153049
Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay. PMID:33150943
Effect of antibiotic gut microbiota disruption on LPS-induced acute lung inflammation. PMID:33147273
Jumping the green wall: The use of PNA-DNA clamps to enhance microbiome sampling depth in wildlife microbiome research. PMID:33145000
Differences in rhizosphere microbial communities between native and non-native Phragmites australis may depend on stand density. PMID:33144997
Betaine Modulates Rumen Archaeal Community and Functioning during Heat and Osmotic Stress Conditions In Vitro. PMID:33144849
Bacterial Communities in the Rhizosphere and Phyllosphere of Halophytes and Drought-Tolerant Plants in Mediterranean Ecosystems. PMID:33142812
The posthatch prophylactic use of ceftiofur affects the cecal microbiota similar to the dietary sanguinarine supplementation in broilers. PMID:33142520
Dietary supplementation with fermented defatted "alperujo" induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens. PMID:33142446
Evidence supporting the microbiota-gut-brain axis in a songbird. PMID:33142087
Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge). PMID:33139872
Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere. PMID:33139870
Diverse and abundant resistome in terrestrial and aquatic vertebrates revealed by transcriptional analysis. PMID:33139761
Nitrifying Microbes in the Rhizosphere of Perennial Grasses are Modified by Biological Nitrification Inhibition. PMID:33138329
Parasites of an Arctic scavenger; the wolverine (Gulo gulo). PMID:33134077
Effects of Rearing Conditions and Sex on Cecal Microbiota in Ducks. PMID:33133040
Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt. PMID:33133031
Short-term high-dose gavage of hydroxychloroquine changes gut microbiota but not the intestinal integrity and immunological responses in mice. PMID:33131749
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons. PMID:33129268
Dilution-to-Stimulation/Extinction Method: a Combination Enrichment Strategy To Develop a Minimal and Versatile Lignocellulolytic Bacterial Consortium. PMID:33127812
The Dwindling Microbiota of Aerobic Vaginitis, an Inflammatory State Enriched in Pathobionts with Limited TLR Stimulation. PMID:33126716
Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome. PMID:33126430
Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters. PMID:33123109
Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid. PMID:33123104
Local Conditions Influence the Prokaryotic Communities Associated With the Mesophotic Black Coral Antipathella subpinnata. PMID:33123099
The Transfer of the Ferredoxin Gene From the Chloroplast to the Nuclear Genome Is Ancient Within the Paraphyletic Genus Thalassiosira. PMID:33123095
Unravelling the gut bacteriome of Ips (Coleoptera: Curculionidae: Scolytinae): identifying core bacterial assemblage and their ecological relevance. PMID:33122700
Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish. PMID:33121541
The gut microbiome in differential diagnosis of diabetic kidney disease and membranous nephropathy. PMID:33121301
gcType: a high-quality type strain genome database for microbial phylogenetic and functional research. PMID:33119759
In silico analysis of the chemotactic system of Agrobacterium tumefaciens. PMID:33118922
Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease. PMID:33117738
Polysaccharide from wild morels alters the spatial structure of gut microbiota and the production of short-chain fatty acids in mice. PMID:33117620
Coral-Associated Viral Assemblages From the Central Red Sea Align With Host Species and Contribute to Holobiont Genetic Diversity. PMID:33117317
Variation of rhizosphere bacterial community diversity in the desert ephemeral plant Ferula sinkiangensis across environmental gradients. PMID:33116202
Diversity and Dynamics of Seaweed Associated Microbial Communities Inhabiting the Lagoon of Venice. PMID:33114532
Towards Genomic Criteria for Delineating Fungal Species. PMID:33114441
Compositional and Functional Comparisons of the Microbiota in the Colostrum and Mature Milk of Dairy Goats. PMID:33114109
Occurrence and Analysis of Thermophilic Poly(butylene adipate-co-terephthalate)-Degrading Microorganisms in Temperate Zone Soils. PMID:33113973
Gut microbiota profiles of treatment-naïve adult acute myeloid leukemia patients with neutropenic fever during intensive chemotherapy. PMID:33112882
Recurrent evolution of high virulence in isolated populations of a DNA virus. PMID:33112738
Gut bacteria Akkermansia is associated with reduced risk of obesity: evidence from the American Gut Project. PMID:33110437
The Role of Phosphorus Limitation in Shaping Soil Bacterial Communities and Their Metabolic Capabilities. PMID:33109755
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes. PMID:33109753
The direct and indirect effects of environmental toxicants on the health of bumblebees and their microbiomes. PMID:33109012
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
Animal and Cellular Studies Demonstrate Some of the Beneficial Impacts of Herring Milt Hydrolysates on Obesity-Induced Glucose Intolerance and Inflammation. PMID:33105775
Association between Aquatic Micropollutant Dissipation and River Sediment Bacterial Communities. PMID:33104348
Understanding the Impact of Cultivar, Seed Origin, and Substrate on Bacterial Diversity of the Sugar Beet Rhizosphere and Suppression of Soil-Borne Pathogens. PMID:33101330
Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom. PMID:33101231
Distinct Roles for Bacterial and Fungal Communities During the Curing of Vanilla. PMID:33101228
Host specificity of microbiome assembly and its fitness effects in phytoplankton. PMID:33097853
Chasing Waterborne Pathogens in Antarctic Human-Made and Natural Environments, with Special Reference to Legionella spp. PMID:33097517
Cyanobacteria and Algae in Clouds and Rain in the Area of puy de Dôme, Central France. PMID:33097513
Soil Characteristics Constrain the Response of Microbial Communities and Associated Hydrocarbon Degradation Genes during Phytoremediation. PMID:33097512
Ruminal Degradation of Rumen-Protected Glucose Influences the Ruminal Microbiota and Metabolites in Early-Lactation Dairy Cows. PMID:33097510
Phylotype-Level Characterization of Complex Communities of Lactobacilli Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach. PMID:33097506
Reduction of Salmonella Typhimurium Cecal Colonisation and Improvement of Intestinal Health in Broilers Supplemented with Fermented Defatted 'Alperujo', an Olive Oil By-Product. PMID:33096645
Alcohol use alters the colonic mucosa-associated gut microbiota in humans. PMID:33096423
16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic Cuscuta campestris and Its Helianthus annuus Host. PMID:33093045
Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units. PMID:33092529
Bacterial Communities of Ixodes scapularis from Central Pennsylvania, USA. PMID:33092135
Biological invasions alter environmental microbiomes: A meta-analysis. PMID:33091062
The on-premise data sharing infrastructure e!DAL: Foster FAIR data for faster data acquisition. PMID:33090199
Lipid antigens in bile from patients with chronic liver diseases activate natural killer T cells. PMID:33089489
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice. PMID:33087520
Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae Cultures. PMID:33086653
Comparative methods for fecal sample storage to preserve gut microbial structure and function in an in vitro model of the human colon. PMID:33085024
Gut Microbiome in Children from Indigenous and Urban Communities in México: Different Subsistence Models, Different Microbiomes. PMID:33081076
Anthraquinone-containing compound in rhubarb prevents indole production via functional changes in gut microbiota. PMID:33078328
The role of the gut microbiome in cancer-related fatigue: pilot study on epigenetic mechanisms. PMID:33078326
Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection. PMID:33077888
Pet-Human Gut Microbiome Host Classifier Using Data from Different Studies. PMID:33076521
Gut Microbiota-Metabolome Changes in Children With Diarrhea by Diarrheagenic E. coli. PMID:33072619
Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota. PMID:33072031
Environmental Parameters and Substrate Type Drive Microeukaryotic Community Structure During Short-Term Experimental Colonization in Subtropical Eutrophic Freshwaters. PMID:33072015
The Impact of Methane on Microbial Communities at Marine Arctic Gas Hydrate Bearing Sediment. PMID:33071992
Planktonic and Benthic Bacterial Communities of the Largest Central European Shallow Lake, Lake Balaton and Its Main Inflow Zala River. PMID:33068137
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study. PMID:33068065
Profiling the differences of gut microbial structure between schizophrenia patients with and without violent behaviors based on 16S rRNA gene sequencing. PMID:33067643
Microbiota characterization in Blastocystis-colonized and Blastocystis-free school-age children from Colombia. PMID:33066814
The Core and Distinction of the Gut Microbiota in Chinese Populations across Geography and Ethnicity. PMID:33066420
Advantages and Limitations of 16S rRNA Next-Generation Sequencing for Pathogen Identification in the Diagnostic Microbiology Laboratory: Perspectives from a Middle-Income Country. PMID:33066371
Anti-Inflammatory Properties and Gut Microbiota Modulation of Porphyra tenera Extracts in Dextran Sodium Sulfate-Induced Colitis in Mice. PMID:33066339
Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life. PMID:33066115
Effect of oral administration of omeprazole on the microbiota of the gastric glandular mucosa and feces of healthy horses. PMID:33063923
Alterations of Gut Microbiota in Type 2 Diabetes Individuals and the Confounding Effect of Antidiabetic Agents. PMID:33062716
An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time. PMID:33062653
Hydrological and soil physiochemical variables determine the rhizospheric microbiota in subtropical lakeshore areas. PMID:33062450
Performance and community structure dynamics of microbial electrolysis cells operated on multiple complex feedstocks. PMID:33062055
Evaluation of 16S rRNA Hypervariable Regions for Bioweapon Species Detection by Massively Parallel Sequencing. PMID:33061983
Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy. PMID:33060828
Bone biodeterioration-The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community. PMID:33057402
The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution. PMID:33053643
Disruptions of Anaerobic Gut Bacteria Are Associated with Stroke and Post-stroke Infection: a Prospective Case-Control Study. PMID:33052545
Pinewood Nematode Alters the Endophytic and Rhizospheric Microbial Communities of Pinus massoniana. PMID:33051738
Impact of varied combinatorial mixture of non-fishmeal ingredients on growth, metabolism, immunity and gut microbiota of Lates calcarifer (Bloch, 1790) fry. PMID:33051467
Vaginal microbiota and human papillomavirus infection among young Swedish women. PMID:33046723
Supplemental selenium source on gut health: insights on fecal microbiome and fermentation products of growing puppies. PMID:33045070
Complex Internal Microstructure of Feather Follicles on Chicken Skin Promotes the Bacterial Cross-Contamination of Carcasses During the Slaughtering Process. PMID:33042079
Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae). PMID:33040738
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization. PMID:33037214
Hypolipidemic effect of Alisma orientale (Sam.) Juzep on gut microecology and liver transcriptome in diabetic rats. PMID:33035272
Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment. PMID:33028975
Root-Secreted Coumarins and the Microbiota Interact to Improve Iron Nutrition in Arabidopsis. PMID:33027611
Taxonomic profiling of individual nematodes isolated from copse soils using deep amplicon sequencing of four distinct regions of the 18S ribosomal RNA gene. PMID:33027282
Changes in Bacterial Diversity, Composition and Interactions During the Development of the Seabird Tick Ornithodoros maritimus (Argasidae). PMID:33025063
Temporal and spatial dynamics in the apple flower microbiome in the presence of the phytopathogen Erwinia amylovora. PMID:33024293
A glance at the gut microbiota of five experimental animal species through fecal samples. PMID:33024229
Preliminary insights into the impact of primary radiochemotherapy on the salivary microbiome in head and neck squamous cell carcinoma. PMID:33024215
Metatranscriptomics by In Situ RNA Stabilization Directly and Comprehensively Revealed Episymbiotic Microbial Communities of Deep-Sea Squat Lobsters. PMID:33024051
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor. PMID:33024037
An Almond-Based Low Carbohydrate Diet Improves Depression and Glycometabolism in Patients with Type 2 Diabetes through Modulating Gut Microbiota and GLP-1: A Randomized Controlled Trial. PMID:33022991
Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts. PMID:33022020
Early-life malnutrition causes gastrointestinal dysmotility that is sexually dimorphic. PMID:33021011
Physiological Stress Mediated by Corticosterone Administration Alters Intestinal Bacterial Communities and Increases the Relative Abundance of Clostridium perfringens in the Small Intestine of Chickens. PMID:33019786
The Rumen Specific Bacteriome in Dry Dairy Cows and Its Possible Relationship with Phenotypes. PMID:33019774
Effects of simulated drought on biological soil quality, microbial diversity and yields under long-term conventional and organic agriculture. PMID:33016314
Changes in Gut Microorganism in Patients with Positive Immune Antibody-Associated Recurrent Abortion. PMID:33015167
Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds. PMID:33013792
First Cryo-Scanning Electron Microscopy Images and X-Ray Microanalyses of Mucoromycotinian Fine Root Endophytes in Vascular Plants. PMID:33013744
Keystone Microbiomes Revealed by 14 Years of Field Restoration of the Degraded Agricultural Soil Under Distinct Vegetation Scenarios. PMID:33013730
Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN. PMID:33013724
Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia. PMID:33013720
The soil in our microbial DNA informs about environmental interfaces across host and subsistence modalities. PMID:33012224
Phylogeny resolved, metabolism revealed: functional radiation within a widespread and divergent clade of sponge symbionts. PMID:33011742
Loss of bacterial diversity in the sinuses is associated with lower smell discrimination scores. PMID:33009469
Revealing the Metabolic Flexibility of "Candidatus Accumulibacter phosphatis" through Redox Cofactor Analysis and Metabolic Network Modeling. PMID:33008826
Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes. PMID:33008816
Microbiome Management by Biological and Chemical Treatments in Maize Is Linked to Plant Health. PMID:33007821
Gut dysbiosis in Huntington's disease: associations among gut microbiota, cognitive performance and clinical outcomes. PMID:33005892
A Mixed Phytogenic Modulates the Rumen Bacteria Composition and Milk Fatty Acid Profile of Water Buffaloes. PMID:33005643
Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations. PMID:33005496
Scale-dependent impact of land management on above- and belowground biodiversity. PMID:33005370
Multi-population cohort meta-analysis of human intestinal microbiota in early life reveals the existence of infant community state types (ICSTs). PMID:33005310
Sensitivity to Morphine Reward Associates With Gut Dysbiosis in Rats With Morphine-Induced Conditioned Place Preference. PMID:33005148
Regulating soil bacterial diversity, community structure and enzyme activity using residues from golden apple snails. PMID:33004949
Mussismilia braziliensis White Plague Disease Is Characterized by an Affected Coral Immune System and Dysbiosis. PMID:33000311
Soil fungal networks are more sensitive to grazing exclusion than bacterial networks. PMID:32999771
A New Type of Chronic Wound Infection after Wisdom Tooth Extraction: A Diagnostic Approach with 16S-rRNA Gene Analysis, Next-Generation Sequencing, and Bioinformatics. PMID:32998201
The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche-driven microbial community assembly processes. PMID:32996246
High-throughput sequencing-based analysis of the composition and diversity of endophytic bacterial community in seeds of upland rice. PMID:32995980
Dietary fatty acid intake and gut microbiota determine circulating endocannabinoidome signaling beyond the effect of body fat. PMID:32994521
Strain-Level Analysis of Bifidobacterium spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes. PMID:32994293
Seasonal Variations in Soil Microbiota Profile of Termite (Syntermes wheeleri) Mounds in the Brazilian Tropical Savanna. PMID:32992494
Chytrid fungi shape bacterial communities on model particulate organic matter. PMID:32991826
Comprehensive Lifestyle-Modification in Patients with Ulcerative Colitis-A Randomized Controlled Trial. PMID:32987894
Dendropanax morbifera Leaf Extracts Improved Alcohol Liver Injury in Association with Changes in the Gut Microbiota of Rats. PMID:32987739
Effects of a Low-Fat Vegan Diet on Gut Microbiota in Overweight Individuals and Relationships with Body Weight, Body Composition, and Insulin Sensitivity. A Randomized Clinical Trial. PMID:32987642
In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations. PMID:32986713
Inoculation of Ensifer fredii strain LP2/20 immobilized in agar results in growth promotion and alteration of bacterial community structure of Chinese kale planted soil. PMID:32985587
Effect of very low-protein diets supplemented with branched-chain amino acids on energy balance, plasma metabolomics and fecal microbiome of pigs. PMID:32985541
Impact of Gut Microbiome on Hypertensive Patients With Low-Salt Intake: Shika Study Results. PMID:32984370
Topic Application of the Probiotic Streptococcus dentisani Improves Clinical and Microbiological Parameters Associated With Oral Health. PMID:32984080
Berry Polyphenols and Fibers Modulate Distinct Microbial Metabolic Functions and Gut Microbiota Enterotype-Like Clustering in Obese Mice. PMID:32983031
Species-Level Analysis of Human Gut Microbiota With Metataxonomics. PMID:32983030
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment. PMID:32983024
Gut Dysbiosis and Increased Intestinal Permeability Drive microRNAs, NLRP-3 Inflammasome and Liver Fibrosis in a Nutritional Model of Non-Alcoholic Steatohepatitis in Adult Male Sprague Dawley Rats. PMID:32982365
Unchartered waters: the unintended impacts of residual chlorine on water quality and biofilms. PMID:32978404
Longitudinal Metatranscriptomic Analysis of a Meat Spoilage Microbiome Detects Abundant Continued Fermentation and Environmental Stress Responses during Shelf Life and Beyond. PMID:32978125
Aerobic microbial communities in the sediments of a marine oxygen minimum zone. PMID:32975580
Parasitic 'Candidatus Aquarickettsia rohweri' is a marker of disease susceptibility in Acropora cervicornis but is lost during thermal stress. PMID:32975356
Effects of Psychotropics on the Microbiome in Patients With Depression and Anxiety: Considerations in a Naturalistic Clinical Setting. PMID:32975292
Effects of Dietary Supplementation with κ-Selenocarrageenan on the Selenium Accumulation and Intestinal Microbiota of the Sea Cucumbers Apostichopus japonicus. PMID:32974844
Oral Health and the Altered Colonic Mucosa-Associated Gut Microbiota. PMID:32974807
Temperature-gradient incubation isolates multiple competitive species from a single environmental sample. PMID:32974564
Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode. PMID:32973733
Dysregulation of metabolic pathways by carnitine palmitoyl-transferase 1 plays a key role in central nervous system disorders: experimental evidence based on animal models. PMID:32973137
Multiple omics analysis reveals that high fiber diets promote gluconeogenesis and inhibit glycolysis in muscle. PMID:32972369
An Unconventional Flavivirus and Other RNA Viruses in the Sea Cucumber (Holothuroidea; Echinodermata) Virome. PMID:32972018
Syngas as Electron Donor for Sulfate and Thiosulfate Reducing Haloalkaliphilic Microorganisms in a Gas-Lift Bioreactor. PMID:32971967
A Prime/Boost Vaccine Regimen Alters the Rectal Microbiome and Impacts Immune Responses and Viremia Control Post-Simian Immunodeficiency Virus Infection in Male and Female Rhesus Macaques. PMID:32967951
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis. PMID:32965212
Repurposing Metformin in Nondiabetic People With HIV: Influence on Weight and Gut Microbiota. PMID:32964062
A network approach to elucidate and prioritize microbial dark matter in microbial communities. PMID:32963345
Invention of Artificial Rice Field Soil: A Tool to Study the Effect of Soil Components on the Activity and Community of Microorganisms Involved in Anaerobic Organic Matter Decomposition. PMID:32963205
Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax). PMID:32963001
Diet Breadth Affects Bacterial Identity but Not Diversity in the Pollen Provisions of Closely Related Polylectic and Oligolectic Bees. PMID:32962223
A multi-omics approach to solving problems in plant disease ecology. PMID:32960892
In search for interplay between stool microRNAs, microbiota and short chain fatty acids in Crohn's disease - a preliminary study. PMID:32958038
Effect of Clinoptilolite and Halloysite Addition on Biogas Production and Microbial Community Structure during Anaerobic Digestion. PMID:32957462
Dietary osteopontin-enriched algal protein as nutritional support in weaned pigs infected with F18-fimbriated enterotoxigenic Escherichia coli. PMID:32954424
An intensive multilocation temporal dataset of fungal and bacterial communities in the root and rhizosphere of Brassica napus. PMID:32953951
DATMA: Distributed AuTomatic Metagenomic Assembly and annotation framework. PMID:32953263
Multi-omics Approaches To Decipher the Impact of Diet and Host Physiology on the Mammalian Gut Microbiome. PMID:32948523
Analysis of airway microbiota in adults from a Brazilian cystic fibrosis center. PMID:32944872
Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity. PMID:32944236
Modulation of pathogenic oral biofilms towards health with nisin probiotic. PMID:32944159
Oil field microorganisms cause highly localized corrosion on chemically inhibited carbon steel. PMID:32940951
Effects of dietary replacement of soybean meal with dried distillers grains with solubles on the microbiota occupying different ecological niches in the rumen of growing Hu lambs. PMID:32939263
Experimental autoimmune encephalomyelitis is associated with changes of the microbiota composition in the gastrointestinal tract. PMID:32938979
Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors. PMID:32936810
Metagenome analysis using serum extracellular vesicles identified distinct microbiota in asthmatics. PMID:32934287
Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis. PMID:32934115
The Effect of Transitioning between Feeding Methods on the Gut Microbiota Dynamics of Yaks on the Qinghai-Tibet Plateau. PMID:32933061
Compositional and Functional Adaptations of Intestinal Microbiota and Related Metabolites in CKD Patients Receiving Dietary Protein Restriction. PMID:32932711
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. PMID:32929208
Cutting out the middle clam: lucinid endosymbiotic bacteria are also associated with seagrass roots worldwide. PMID:32929207
Characterization of Gut Microbiota in Prenatal Cold Stress Offspring Rats by 16S rRNA Sequencing. PMID:32927774
Both Soil Bacteria and Soil Chemical Property Affected the Micropredator Myxobacterial Community: Evidence from Natural Forest Soil and Greenhouse Rhizosphere Soil. PMID:32927762
Intestinal Tract Microbe Communities Associated with Horseshoe Crabs from Beibu Gulf, China. PMID:32926183
Adaption of microbial communities to the hostile environment in the Doce River after the collapse of two iron ore tailing dams. PMID:32923720
Revealing the in vivo growth and division patterns of mouse gut bacteria. PMID:32917613
Is a Central Sediment Sample Sufficient? Exploring Spatial and Temporal Microbial Diversity in a Small Lake. PMID:32916957
Warmth Prevents Bone Loss Through the Gut Microbiota. PMID:32916104
The abundance of arbuscular mycorrhiza in soils is linked to the total length of roots colonized at ecosystem level. PMID:32915795
An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists. PMID:32911871
Plant growth promoting rhizobacteria isolated from halophytes and drought-tolerant plants: genomic characterisation and exploration of phyto-beneficial traits. PMID:32908201
Metagenomic Analysis of the Virome of Mosquito Excreta. PMID:32907949
Oxalate-Degrading Bacillus subtilis Mitigates Urolithiasis in a Drosophila melanogaster Model. PMID:32907948
Nanoparticle treatment of maize analyzed through the metatranscriptome: compromised nitrogen cycling, possible phytopathogen selection, and plant hormesis. PMID:32907632
Application of a High-Throughput Amplicon Sequencing Method to Chart the Bacterial Communities that Are Associated with European Fermented Meats from Different Origins. PMID:32906631
Discovery of an interplay between the gut microbiota and esophageal squamous cell carcinoma in mice. PMID:32905484
Metagenomic Profiling and Microbial Metabolic Potential of Perdido Fold Belt (NW) and Campeche Knolls (SE) in the Gulf of Mexico. PMID:32903729
Soil Microbiomes With the Genetic Capacity for Atmospheric Chemosynthesis Are Widespread Across the Poles and Are Associated With Moisture, Carbon, and Nitrogen Limitation. PMID:32903524
A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes. PMID:32903276
Impact of Diabetes on the Gut and Salivary IgA Microbiomes. PMID:32900816
Flagellar kinematics reveals the role of environment in shaping sperm motility. PMID:32900303
Faecal Microbiota of Dogs Offered a Vegetarian Diet with or without the Supplementation of Feather Meal and either Cornmeal, Rye or Fermented Rye: A Preliminary Study. PMID:32899987
Gut Microbiome Associated with the Psychoneurological Symptom Cluster in Patients with Head and Neck Cancers. PMID:32899975
Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment. PMID:32899353
Young versus aged microbiota transplants to germ-free mice: increased short-chain fatty acids and improved cognitive performance. PMID:32897773
Microbial interactions in the mosquito gut determine Serratia colonization and blood-feeding propensity. PMID:32895494
Effects of environmental factors on microbiota of fruits and soil of Coffea arabica in Brazil. PMID:32895415
Impact and consequences of intensive chemotherapy on intestinal barrier and microbiota in acute myeloid leukemia: the role of mucosal strengthening. PMID:32893715
Oral microbiome and onset of oral mucositis in patients with squamous cell carcinoma of the head and neck. PMID:32888342
Association between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasia. PMID:32887934
A porcine ligated loop model reveals new insight into the host immune response against Campylobacter jejuni. PMID:32887530
Differences in the Endophytic Microbiome of Olive Cultivars Infected by Xylella fastidiosa across Seasons. PMID:32887278
Sex Differences in Intestinal Microbial Composition and Function of Hainan Special Wild Boar. PMID:32887230
Distinct Effects of Milk-Derived and Fermented Dairy Protein on Gut Microbiota and Cardiometabolic Markers in Diet-Induced Obese Mice. PMID:32886125
Plant species identity drives soil microbial community structures that persist under a following crop. PMID:32884648
Modern urbanization has reshaped the bacterial microbiome profiles of house dust in domestic environments. PMID:32884612
Ecological insights into assembly processes and network structures of bacterial biofilms in full-scale biologically active carbon filters under ozone implementation. PMID:32882545
Baicalin-Copper Complex Modulates Gut Microbiota, Inflammatory Responses, and Hormone Secretion in DON-Challenged Piglets. PMID:32878107
Trichoderma harzianum Inoculation Reduces the Incidence of Clubroot Disease in Chinese Cabbage by Regulating the Rhizosphere Microbial Community. PMID:32878079
Microbiome of root vegetables-a source of gluten-degrading bacteria. PMID:32875365
Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia. PMID:32874776
The cell organization underlying structural colour is involved in Flavobacterium IR1 predation. PMID:32873891
Host age is not a consistent predictor of microbial diversity in the coral Porites lutea. PMID:32873814
Western-type diet influences mortality from necrotising pancreatitis and demonstrates a central role for butyrate. PMID:32873697
Microbiota Modulates the Immunomodulatory Effects of Filifolinone on Atlantic Salmon. PMID:32872599
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont. PMID:32870981
Hot in Cold: Microbial Life in the Hottest Springs in Permafrost. PMID:32867302
Transformation of organic matter in a Barents Sea sediment profile: coupled geochemical and microbiological processes. PMID:32862813
Integrated microbiota and metabolite profiles link Crohn's disease to sulfur metabolism. PMID:32859898
Differential Gene Expression Between Polymorphic Zooids of the Marine Bryozoan Bugulina stolonifera. PMID:32859685
Assessment of Soil Features on the Growth of Environmental Nontuberculous Mycobacterial Isolates from Hawai'i. PMID:32859599
Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2. PMID:32859275
Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression. PMID:32858886
Microbial Culture in Minimal Medium With Oil Favors Enrichment of Biosurfactant Producing Genes. PMID:32850771
Microbial Processes and Microbial Communities in the Water Column of the Polar Meromictic Lake Bol'shie Khruslomeny at the White Sea Coast. PMID:32849486
Ruminal Fermentation Pattern, Bacterial Community Composition, and Nutrient Digestibility of Nellore Cattle Submitted to Either Nutritional Restriction or Intake of Concentrate Feedstuffs Prior to Adaptation Period. PMID:32849453
Microbiomes and Specific Symbionts of Social Spiders: Compositional Patterns in Host Species, Populations, and Nests. PMID:32849442
Effects of Gut Microbiome and Short-Chain Fatty Acids (SCFAs) on Finishing Weight of Meat Rabbits. PMID:32849435
Evaluation of Enzymatic Cleaning on Food Processing Installations and Food Products Bacterial Microflora. PMID:32849429
Composition and Diversity of Natural Bacterial Communities in Mabisi, a Traditionally Fermented Milk. PMID:32849423
Geochemistry and Microbiology Predict Environmental Niches With Conditions Favoring Potential Microbial Activity in the Bakken Shale. PMID:32849400
Microbiota in Dung and Milk Differ Between Organic and Conventional Dairy Farms. PMID:32849375
Enrichment of Comammox and Nitrite-Oxidizing Nitrospira From Acidic Soils. PMID:32849373
Great Tit (Parus major) Uropygial Gland Microbiomes and Their Potential Defensive Roles. PMID:32849371
Novel Antimicrobial Cellulose Fleece Inhibits Growth of Human-Derived Biofilm-Forming Staphylococci During the SIRIUS19 Simulated Space Mission. PMID:32849336
IL-13 as Target to Reduce Cholestasis and Dysbiosis in Abcb4 Knockout Mice. PMID:32846954
Gut Microbiome Composition is Associated with Age and Memory Performance in Pet Dogs. PMID:32846928
Niche Partitioning between Coastal and Offshore Shelf Waters Results in Differential Expression of Alkane and Polycyclic Aromatic Hydrocarbon Catabolic Pathways. PMID:32843540
Large freshwater phages with the potential to augment aerobic methane oxidation. PMID:32839536
Freshwater phytoplankton diversity: models, drivers and implications for ecosystem properties. PMID:32836348
Soil properties, bacterial and fungal community compositions and the key factors after 5-year continuous monocropping of three minor crops. PMID:32833980
The microbiome: an emerging key player in aging and longevity. PMID:32832742
Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities. PMID:32832266
Alteration of the abundance of Parvimonas micra in the gut along the adenoma-carcinoma sequence. PMID:32831925
The Interactive Effects of Crude Oil and Corexit 9500 on Their Biodegradation in Arctic Seawater. PMID:32826215
Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition. PMID:32825849
The Milk Microbiota of the Spanish Churra Sheep Breed: New Insights into the Complexity of the Milk Microbiome of Dairy Species. PMID:32825408
Diversity in the Extracellular Vesicle-Derived Microbiome of Tissues According to Tumor Progression in Pancreatic Cancer. PMID:32825137
Dietary Lipids Influence Bioaccessibility of Polyphenols from Black Carrots and Affect Microbial Diversity under Simulated Gastrointestinal Digestion. PMID:32824607
Cellular Localization of Two Rickettsia Symbionts in the Digestive System and within the Ovaries of the Mirid Bug, Macrolophous pygmaeus. PMID:32823761
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. PMID:32821400
Physicochemical and biological controls of sulfide accumulation in a high temperature oil reservoir. PMID:32820372
Response of the gut microbiota during the Clostridioides difficile infection in tree shrews mimics those in humans. PMID:32819295
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. PMID:32819293
Microbial Communities across Global Marine Basins Show Important Compositional Similarities by Depth. PMID:32817104
Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate. PMID:32814582
Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine. PMID:32814028
Passenger-surface microbiome interactions in the subway of Mexico City. PMID:32813719
Metagenomic Studies in Inflammatory Skin Diseases. PMID:32813091
N2 fixation dominates nitrogen cycling in a mangrove fiddler crab holobiont. PMID:32811860
Spider phylosymbiosis: divergence of widow spider species and their tissues' microbiomes. PMID:32811423
A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform. PMID:32810209
Reciprocal Interactions between Epigallocatechin-3-gallate (EGCG) and Human Gut Microbiota In Vitro. PMID:32808768
Dissimilatory sulfate reduction in the archaeon 'Candidatus Vulcanisaeta moutnovskia' sheds light on the evolution of sulfur metabolism. PMID:32807893
Luminal and Mucosal Microbiota of the Cecum and Large Colon of Healthy and Diarrheic Horses. PMID:32806591
The Existence and Localization of Nuclear snoRNAs in Arabidopsis thaliana Revisited. PMID:32806552
Influence of PCR cycle number on 16S rRNA gene amplicon sequencing of low biomass samples. PMID:32805370
Shrub coverage alters the rumen bacterial community of yaks (Bos grunniens) grazing in alpine meadows. PMID:32803183
Comparative gut microbiome analysis of the Prakriti and Sasang systems reveals functional level similarities in constitutionally similar classes. PMID:32802721
Regularized S-Map Reveals Varying Bacterial Interactions. PMID:32801185
Effects of MP Polyethylene Microparticles on Microbiome and Inflammatory Response of Larval Zebrafish. PMID:32796641
Antifungal Potential of the Skin Microbiota of Hibernating Big Brown Bats (Eptesicus fuscus) Infected With the Causal Agent of White-Nose Syndrome. PMID:32793178
Evidence of Vent-Adaptation in Sponges Living at the Periphery of Hydrothermal Vent Environments: Ecological and Evolutionary Implications. PMID:32793148
Microbial Strategies for Survival in the Glass Sponge Vazella pourtalesii. PMID:32788407
Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler's diarrhea. PMID:32785284
Microbial Communities in Permafrost Soils of Larsemann Hills, Eastern Antarctica: Environmental Controls and Effect of Human Impact. PMID:32784619
Effects of fermented feeds and ginseng polysaccharides on the intestinal morphology and microbiota composition of Xuefeng black-bone chicken. PMID:32780763
Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach. PMID:32778680
Treatment with the traditional Chinese medicine BuYang HuanWu Tang induces alterations that normalize the microbiome in ASD patients. PMID:32775128
A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities. PMID:32770118
Versatile cyanobacteria control the timing and extent of sulfide production in a Proterozoic analog microbial mat. PMID:32770117
Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea. PMID:32770005
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota. PMID:32767985
Microbiomes of colored dental biofilms in children with or without severe caries experience. PMID:32767520
Letrozole and the Traditional Chinese Medicine, Shaofu Zhuyu Decoction, Reduce Endometriotic Disease Progression in Rats: A Potential Role for Gut Microbiota. PMID:32765629
Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota. PMID:32765559
Cortisol-Related Signatures of Stress in the Fish Microbiome. PMID:32765459
Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches. PMID:32765444
Oral and vaginal microbiota in selected field mice of the genus Apodemus: a wild population study. PMID:32764739
Bacteriomic Profiling of Branchial Lesions Induced by Neoparamoeba perurans Challenge Reveals Commensal Dysbiosis and an Association with Tenacibaculum dicentrarchi in AGD-Affected Atlantic Salmon (Salmo salar L.). PMID:32764238
Chronic Gq signaling in AgRP neurons does not cause obesity. PMID:32764144
Canopy Position Has a Stronger Effect than Tree Species Identity on Phyllosphere Bacterial Diversity in a Floodplain Hardwood Forest. PMID:32761502
Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. PMID:32760545
Genomic Variation and Arsenic Tolerance Emerged as Niche Specific Adaptations by Different Exiguobacterium Strains Isolated From the Extreme Salar de Huasco Environment in Chilean - Altiplano. PMID:32760381
Diverse Microbial Composition of Sourdoughs From Different Origins. PMID:32760353
Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome. PMID:32759335
Low-Temperature Biosurfactants from Polar Microbes. PMID:32756528
The Effectiveness of Multi-Session FMT Treatment in Active Ulcerative Colitis Patients: A Pilot Study. PMID:32756350
The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community. PMID:32756341
The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes. PMID:32754127
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. PMID:32753501
The human gut archaeome: identification of diverse haloarchaea in Korean subjects. PMID:32753050
Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition. PMID:32752028
Effects of Thymol Supplementation on Goat Rumen Fermentation and Rumen Microbiota In Vitro. PMID:32751619
Synbiotic Effect of Bifidobacterium lactis CNCM I-3446 and Bovine Milk-Derived Oligosaccharides on Infant Gut Microbiota. PMID:32751149
The Subgingival Microbiome in Patients with Down Syndrome and Periodontitis. PMID:32748845
Analysis of the human breast milk microbiome and bacterial extracellular vesicles in healthy mothers. PMID:32747701
Rapid microbial diversification of dissolved organic matter in oceanic surface waters leads to carbon sequestration. PMID:32747679
Diversity and specificity of the bacterial community in Chinese horse milk cheese. PMID:32741094
A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota. PMID:32737353
Isolation and Characterization in a Soil Conditioned With Foaming Agents of a Bacterial Consortium Able to Degrade Sodium Lauryl Ether Sulfate. PMID:32733421
Low Abundance of Methanotrophs in Sediments of Shallow Boreal Coastal Zones With High Water Methane Concentrations. PMID:32733420
Microbiome Variation Across Two Hemlock Species With Hemlock Woolly Adelgid Infestation. PMID:32733417
Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae). PMID:32733002
16S rRNA metagenomic data of microbial diversity of Pheidole decarinata Santschi (Hymenoptera: Formicidae) workers. PMID:32728606
Nasopharyngeal Microbiota Profiling of SARS-CoV-2 Infected Patients. PMID:32728349
Visualization of Lokiarchaeia and Heimdallarchaeia (Asgardarchaeota) by Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition (CARD-FISH). PMID:32727863
Effects of Vitamin B2 Supplementation in Broilers Microbiota and Metabolome. PMID:32727134
An Enteric Pathogen Subverts Colonization Resistance by Evading Competition for Amino Acids in the Gut. PMID:32726577
A murine model of pediatric inflammatory bowel disease causes microbiota-gut-brain axis deficits in adulthood. PMID:32726162
Effects of the soil microbiome on the demography of two annual prairie plants. PMID:32724508
Convolutional neural networks improve fungal classification. PMID:32724224
Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast. PMID:32724137
Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years. PMID:32724059
The Behavior of Amphibians Shapes Their Symbiotic Microbiomes. PMID:32723798
Untangling Species-Level Composition of Complex Bacterial Communities through a Novel Metagenomic Approach. PMID:32723792
Quantification of Cable Bacteria in Marine Sediments via qPCR. PMID:32719667
Thinning Partially Mitigates the Impact of Atlantic Forest Replacement by Pine Monocultures on the Soil Microbiome. PMID:32719665
Immunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the Afribiota study. PMID:32718353
Altered Patterns of Compositional and Functional Disruption of the Gut Microbiota in Typhoid Fever and Nontyphoidal Febrile Illness. PMID:32715018
Variability of Gut Microbiota Across the Life Cycle of Grapholita molesta (Lepidoptera: Tortricidae). PMID:32714300
Culturing Bacteria From Fermentation Pit Muds of Baijiu With Culturomics and Amplicon-Based Metagenomic Approaches. PMID:32714285
Relationship between Rainfall, Fecal Pollution, Antimicrobial Resistance, and Microbial Diversity in an Urbanized Subtropical Bay. PMID:32709726
Otitis media susceptibility and shifts in the head and neck microbiome due to SPINK5 variants. PMID:32709676
Influence of Citrus Scion/Rootstock Genotypes on Arbuscular Mycorrhizal Community Composition under Controlled Environment Condition. PMID:32708770
Limited Response of Indigenous Microbes to Water and Nutrient Pulses in High-Elevation Atacama Soils: Implications for the Cold-Dry Limits of Life on Earth. PMID:32708721
A Comprehensive Evaluation of the Impact of Bovine Milk Containing Different Beta-Casein Profiles on Gut Health of Ageing Mice. PMID:32707687
Interactions of Segmented Filamentous Bacteria (Candidatus Savagella) and bacterial drivers in colitis-associated colorectal cancer development. PMID:32706816
Local and Geographic Factors Shape the Occupancy-Frequency Distribution of Freshwater Bacteria. PMID:32705311
Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis. PMID:32704442
Ohmic resistance affects microbial community and electrochemical kinetics in a multi-anode microbial electrochemical cell. PMID:32704200
Carbon steel corrosion by bacteria from failed seal rings at an offshore facility. PMID:32703991
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. PMID:32703166
Enhanced biodiversity of gut flora and feed efficiency in pond cultured tilapia under reduced frequency feeding strategies. PMID:32702020
Beef cattle that respond differently to fescue toxicosis have distinct gastrointestinal tract microbiota. PMID:32701945
AmpliCI: a high-resolution model-based approach for denoising Illumina amplicon data. PMID:32697845
Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina. PMID:32697800
Airborne bacterial emission fluxes from manure-fertilized agricultural soil. PMID:32697046
Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa. PMID:32695089
Stochastic Dispersal Rather Than Deterministic Selection Explains the Spatio-Temporal Distribution of Soil Bacteria in a Temperate Grassland. PMID:32695081
Integration of Marine Macroalgae (Chaetomorpha maxima) with a Moving Bed Bioreactor for Nutrient Removal from Maricultural Wastewater. PMID:32694930
System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor. PMID:32694126
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age. PMID:32693091
Iron is not everything: unexpected complex metabolic responses between iron-cycling microorganisms. PMID:32690937
The host-associated archaeome. PMID:32690877
Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes. PMID:32686326
Gut Microbiota and Liver Fibrosis: One Potential Biomarker for Predicting Liver Fibrosis. PMID:32685479
Gut microbial composition in patients with atrial fibrillation: effects of diet and drugs. PMID:32683492
Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog. PMID:32681159
Fecal microbial transplantation and a high fiber diet attenuates emphysema development by suppressing inflammation and apoptosis. PMID:32681029
Effects of microbial evolution dominate those of experimental host-mediated indirect selection. PMID:32676220
Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes. PMID:32676061
Seasonal Dynamics of Pelagic Mycoplanktonic Communities: Interplay of Taxon Abundance, Temporal Occurrence, and Biotic Interactions. PMID:32676057
Linking rhizosphere bacterial diversity and soil fertility in tobacco plants under different soil types and cropping pattern in Tanzania: A pilot study. PMID:32671244
Intestinal Microbiota and Immune Modulation in Zebrafish by Fucoidan From Okinawa Mozuku (Cladosiphon okamuranus). PMID:32671088
Yeast Assimilable Nitrogen Concentrations Influence Yeast Gene Expression and Hydrogen Sulfide Production During Cider Fermentation. PMID:32670223
Seasonal Variation and Sexual Dimorphism of the Microbiota in Wild Blue Sheep (Pseudois nayaur). PMID:32670222
Simiao Decoction Alleviates Gouty Arthritis by Modulating Proinflammatory Cytokines and the Gut Ecosystem. PMID:32670069
Bacterial chemolithoautotrophy via manganese oxidation. PMID:32669693
Bacterial Community Structure Dynamics in Meloidogyne incognita-Infected Roots and Its Role in Worm-Microbiome Interactions. PMID:32669465
CeMbio - The Caenorhabditis elegans Microbiome Resource. PMID:32669368
Biomass addition alters community assembly in ultrafiltration membrane biofilms. PMID:32665605
Meiofauna improve oxygenation and accelerate sulfide removal in the seasonally hypoxic seabed. PMID:32662428
Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar concentrations. PMID:32661899
Metabolic Engineering Escherichia coli for the Production of Lycopene. PMID:32659911
Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing. PMID:32658916
Breast-Milk Microbiota Linked to Celiac Disease Development in Children: A Pilot Study From the PreventCD Cohort. PMID:32655529
Impacts of Anthropogenic Pollutants on Benthic Prokaryotic Communities in Mediterranean Touristic Ports. PMID:32655521
Taxon Appearance From Extraction and Amplification Steps Demonstrates the Value of Multiple Controls in Tick Microbiota Analysis. PMID:32655509
Single-Cell Genomics of Novel Actinobacteria With the Wood-Ljungdahl Pathway Discovered in a Serpentinizing System. PMID:32655506
The Effects of Prebiotic Supplementation with OMNi-LOGiC® FIBRE on Fecal Microbiome, Fecal Volatile Organic Compounds, and Gut Permeability in Murine Neuroblastoma-Induced Tumor-Associated Cachexia. PMID:32650568
Nitrogen enrichment stimulates wetland plant responses whereas salt amendments alter sediment microbial communities and biogeochemical responses. PMID:32649660
A glimpse into the biogeography, seasonality, and ecological functions of arctic marine Oomycota. PMID:32647615
Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir. PMID:32647153
Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico. PMID:32641486
Daily Vaginal Microbiota Fluctuations Associated with Natural Hormonal Cycle, Contraceptives, Diet, and Exercise. PMID:32641429
Gut microbiota composition before infection determines the Salmonella super- and low-shedder phenotypes in chicken. PMID:32639676
Methanotroph populations and CH4 oxidation potentials in high-Arctic peat are altered by herbivory induced vegetation change. PMID:32639555
Direct Comparison of Fecal and Gut Microbiota in the Blue Mussel (Mytilus edulis) Discourages Fecal Sampling as a Proxy for Resident Gut Community. PMID:32638043
Low IgA Associated With Oropharyngeal Microbiota Changes and Lung Disease in Primary Antibody Deficiency. PMID:32636843
Continent-Scale Sampling Reveals Fine-Scale Turnover in a Beneficial Bug Symbiont. PMID:32636818
Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples. PMID:32636817
Descent of Bacteria and Eukarya From an Archaeal Root of Life. PMID:32636606
Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju. PMID:32633756
Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut. PMID:32632261
Bladder cancer-related microbiota: examining differences in urine and tissue samples. PMID:32632181
How being synanthropic affects the gut bacteriome and mycobiome: comparison of two mouse species with contrasting ecologies. PMID:32631223
Microbial Diversity Associated with Gwell, a Traditional French Mesophilic Fermented Milk Inoculated with a Natural Starter. PMID:32629873
Effects of Yu-Ping-Feng polysaccharides (YPS) on the immune response, intestinal microbiota, disease resistance and growth performance of Litopenaeus vannamei. PMID:32629103
Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences. PMID:32627830
The bacterial community and metabolome dynamics and their interactions modulate fermentation process of whole crop corn silage prepared with or without inoculants. PMID:32627363
Diazotroph Diversity Associated With Scleractinian Corals and Its Relationships With Environmental Variables in the South China Sea. PMID:32625112
Syntrophic acetate oxidation replaces acetoclastic methanogenesis during thermophilic digestion of biowaste. PMID:32620171
Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers. PMID:32620152
Fine-scale succession patterns and assembly mechanisms of bacterial community of Litopenaeus vannamei larvae across the developmental cycle. PMID:32620132
Fragmentation of plastic objects in a laboratory seawater microcosm. PMID:32616793
Sequences of Endophytic Fungal and Bacterial Communities from Araucaria araucana [(Molina) K. Koch, 1869] in the Coastal and Andes Mountain Ranges, Chile. PMID:32616642
Metagenomics analysis of rhizospheric bacterial communities of Saccharum arundinaceum growing on organometallic sludge of sugarcane molasses-based distillery. PMID:32612900
Multimodal Approach to Assessment of Fecal Microbiota Donors based on Three Complementary Methods. PMID:32610522
Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture. PMID:32606031
The evolution of the Puf superfamily of proteins across the tree of eukaryotes. PMID:32605621
Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys. PMID:32605604
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion. PMID:32605573
The Bacterial Gut Microbiota of Schoolchildren from High and Low Socioeconomic Status: A Study in an Urban Area of Makassar, Indonesia. PMID:32604882
A guide to human microbiome research: study design, sample collection, and bioinformatics analysis. PMID:32604176
Bacterial diversity in the clarki ecotype of the photosynthetic sacoglossan, Elysia crispata. PMID:32602643
Effects of supplementary feeding on the rumen morphology and bacterial diversity in lambs. PMID:32596052
Microbiology of molar-incisor hypomineralization lesions. A pilot study. PMID:32595912
Microbiomes of Caribbean Octocorals Vary Over Time but Are Resistant to Environmental Change. PMID:32595627
Changes in Faecal Microbiota Profiles Associated With Performance and Birthweight of Piglets. PMID:32595608
Association between the sinus microbiota with eosinophilic inflammation and prognosis in chronic rhinosinusitis with nasal polyps. PMID:32595207
Developing standards for the microbiome field. PMID:32591016
Reservoirs of antimicrobial resistance genes in retail raw milk. PMID:32591006
Rationale and design of "Hearts & Parks": study protocol for a pragmatic randomized clinical trial of an integrated clinic-community intervention to treat pediatric obesity. PMID:32590958
Dysbiosis is not present in horses with fecal water syndrome when compared to controls in spring and autumn. PMID:32588473
Quorum Sensing Signals Alter in vitro Soil Virus Abundance and Bacterial Community Composition. PMID:32587586
Unveiling the Microbiota Diversity of the Xerophyte Argania spinosa L. Skeels Root System and Residuesphere. PMID:32583006
Rumen Microbiota Distribution Analyzed by High-Throughput Sequencing After Oral Doxycycline Administration in Beef Cattle. PMID:32582771
Prokaryotic Response to Phytodetritus-Derived Organic Material in Epi- and Mesopelagic Antarctic Waters. PMID:32582131
Cryoconite Hole Location in East-Antarctic Untersee Oasis Shapes Physical and Biological Diversity. PMID:32582104
Crop Management Impacts the Soybean (Glycine max) Microbiome. PMID:32582080
Characterization of a Novel Functional Trimeric Catechol 1,2-Dioxygenase From a Pseudomonas stutzeri Isolated From the Gulf of Mexico. PMID:32582076
Marine Group II Euryarchaeota Contribute to the Archaeal Lipid Pool in Northwestern Pacific Ocean Surface Waters. PMID:32582055
Bacterial Communities in Stream Biofilms in a Degrading Grassland Watershed on the Qinghai-Tibet Plateau. PMID:32582054
Pea (Pisum sativum l.) Plant Shapes Its Rhizosphere Microbiome for Nutrient Uptake and Stress Amelioration in Acidic Soils of the North-East Region of India. PMID:32582047
A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy). PMID:32580393
Macrofaunal control of microbial community structure in continental margin sediments. PMID:32576690
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. PMID:32576248
Codium fragile Ameliorates High-Fat Diet-Induced Metabolism by Modulating the Gut Microbiota in Mice. PMID:32575855
Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA. PMID:32573682
Energy-Efficient Single-Stage Nitrite Shunt Denitrification with Saline Sewage through Concise Dissolved Oxygen (DO) Supply: Process Performance and Microbial Communities. PMID:32570720
Sleep fragmentation increases blood pressure and is associated with alterations in the gut microbiome and fecal metabolome in rats. PMID:32567509
Protein Level and Infantile Diarrhea in a Postweaning Piglet Model. PMID:32565721
Expanding the Diversity of Bacterioplankton Isolates and Modeling Isolation Efficacy with Large-Scale Dilution-to-Extinction Cultivation. PMID:32561583
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. PMID:32560349
Impact of High-Hydrostatic Pressure Treatments Applied Singly or in Combination with Moderate Heat on the Microbial Load, Antimicrobial Resistance, and Bacterial Diversity of Guacamole. PMID:32560174
Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. PMID:32556274
Perinatal risk factors for fecal antibiotic resistance gene patterns in pregnant women and their infants. PMID:32555719
Acyl homoserine lactone-mediated quorum sensing in the oral cavity: a paradigm revisited. PMID:32555242
Differential Responses of a Coastal Prokaryotic Community to Phytoplanktonic Organic Matter Derived from Cellular Components and Exudates. PMID:32554942
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes. PMID:32553109
Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments. PMID:32552798
Maternal Microbiota, Cortisol Concentration, and Post-Partum Weight Recovery are Dependent on Mode of Delivery. PMID:32549282
The Composition and Function of Microbiomes Within Microcystis Colonies Are Significantly Different Than Native Bacterial Assemblages in Two North American Lakes. PMID:32547511
A prospective longitudinal study on the microbiota composition in amyotrophic lateral sclerosis. PMID:32546239
Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Transcriptome in Mice. PMID:32544245
Marine mammal skin microbiotas are influenced by host phylogeny. PMID:32537203
Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens. PMID:32537141
Dental aerosols: microbial composition and spatial distribution. PMID:32537096
Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18. PMID:32536908
Influence of the long-term use of oral hygiene products containing stannous ions on the salivary microbiome - a randomized controlled trial. PMID:32533015
Underlying Mechanism of Wild Radix pseudostellariae in Tolerance to Disease Under the Natural Forest Cover. PMID:32528459
Effects of Fermented Herbal Tea Residues on the Intestinal Microbiota Characteristics of Holstein Heifers Under Heat Stress. PMID:32528442
Spatio-temporal trends in richness and persistence of bacterial communities in decline-phase water vole populations. PMID:32528097
Elimination of "kitome" and "splashome" contamination results in lack of detection of a unique placental microbiome. PMID:32527226
Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies. PMID:32523565
Effect of dietary gossypol supplement on fermentation characteristics and bacterial diversity in the rumen of sheep. PMID:32520963
Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. PMID:32518248
Roles of Organohalide-Respiring Dehalococcoidia in Carbon Cycling. PMID:32518199
Human Milk Oligosaccharides Modulate the Risk for Preterm Birth in a Microbiome-Dependent and -Independent Manner. PMID:32518196
A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae). PMID:32516485
Members of Prevotella Genus Distinctively Modulate Innate Immune and Barrier Functions in a Human Three-Dimensional Endometrial Epithelial Cell Model. PMID:32515473
Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. PMID:32513256
Cartography of Free-Living Amoebae in Soil in Guadeloupe (French West Indies) Using DNA Metabarcoding. PMID:32512696
Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. PMID:32510843
Endosymbiotic adaptations in three new bacterial species associated with Dictyostelium discoideum: Paraburkholderia agricolaris sp. nov., Paraburkholderia hayleyella sp. nov., and Paraburkholderia bonniea sp. nov. PMID:32509456
Role of Small Intestine and Gut Microbiome in Plant-Based Oral Tolerance for Hemophilia. PMID:32508814
The Core Gut Microbiome of Black Soldier Fly (Hermetia illucens) Larvae Raised on Low-Bioburden Diets. PMID:32508795
Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture. PMID:32508777
The Effects of High-Salt Gastric Intake on the Composition of the Intestinal Microbiota in Wistar Rats. PMID:32504527
Changes in soil microbial communities at Jinsha earthen site are associated with earthen site deterioration. PMID:32503433
Endo-1,3(4)-β-Glucanase-Treatment of Oat β-Glucan Enhances Fermentability by Infant Fecal Microbiota, Stimulates Dectin-1 Activation and Attenuates Inflammatory Responses in Immature Dendritic Cells. PMID:32503178
Eukaryotic Microbial Communities in Japanese Arable Andisols Investigated by Amplicon Sequencing of 18S rRNA Genes. PMID:32499366
Detection of Wolbachia Infections in Natural and Laboratory Populations of the Moroccan Hessian Fly, Mayetiola destructor (Say). PMID:32498270
Comparison of the gut microbiome composition among individuals with acute or long-standing spinal cord injury vs. able-bodied controls. PMID:32496944
Structural and functional shifts of soil prokaryotic community due to Eucalyptus plantation and rotation phase. PMID:32493970
Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing. PMID:32493511
Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis. PMID:32487781
PIWIL3 Forms a Complex with TDRKH in Mammalian Oocytes. PMID:32486081
Spatial Variation in Bacterioplankton Communities in the Pearl River, South China: Impacts of Land Use and Physicochemical Factors. PMID:32485891
Structural and functional changes of gut microbiota in ovariectomized rats and their correlations with altered bone mass. PMID:32484785
Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut. PMID:32483307
Analysis of immune, microbiota and metabolome maturation in infants in a clinical trial of Lactobacillus paracasei CBA L74-fermented formula. PMID:32483147
Airborne bacteria confirm the pristine nature of the Southern Ocean boundary layer. PMID:32482865
Effect of a Multispecies Probiotic on Intestinal and Skin Colonization by Multidrug-Resistant Gram-Negative Bacteria in Patients in a Long-Term Care Facility: A Pilot Study. PMID:32481668
What Can the Bacterial Community of Atta sexdens (Linnaeus, 1758) Tell Us about the Habitats in Which This Ant Species Evolves? PMID:32481532
The effect of maternal antibiotic use in sows on intestinal development in offspring. PMID:32479635
Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota. PMID:32478111
Microbial Community Dynamics and Natural Fermentation Profiles of Ensiled Alpine Grass Elymus nutans Prepared From Different Regions of the Qinghai-Tibetan Plateau. PMID:32477296
The in vitro Effect of Fibers With Different Degrees of Polymerization on Human Gut Bacteria. PMID:32477290
Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake. PMID:32477281
Effect of oxygen limitation on the enrichment of bacteria degrading either benzene or toluene and the identification of Malikia spinosa (Comamonadaceae) as prominent aerobic benzene-, toluene-, and ethylbenzene-degrading bacterium: enrichment, isolation and whole-genome analysis. PMID:32474783
The Gut Microbial Architecture of Efficiency Traits in the Domestic Poultry Model Species Japanese Quail (Coturnix japonica) Assessed by Mixed Linear Models. PMID:32471941
Dissecting the effect of continuous cropping of potato on soil bacterial communities as revealed by high-throughput sequencing. PMID:32469988
Mining the Yucatan Coastal Microbiome for the Identification of Non-Ribosomal Peptides Synthetase (NRPS) Genes. PMID:32466531
Impact of Gut Bacteria on the Infection and Transmission of Pathogenic Arboviruses by Biting Midges and Mosquitoes. PMID:32462391
Enhanced microbial degradation of irradiated cellulose under hyperalkaline conditions. PMID:32459307
Poor Unstable Midgut Microbiome of Hard Ticks Contrasts With Abundant and Stable Monospecific Microbiome in Ovaries. PMID:32457850
The Cultivable Bacterial Microbiota Associated to the Medicinal Plant Origanum vulgare L.: From Antibiotic Resistance to Growth-Inhibitory Properties. PMID:32457726
Eye-Catching Microbes-Polyphasic Analysis of the Microbiota on Microscope Oculars Verifies Their Role as Fomites. PMID:32455878
Effects of Agave Fructans, Inulin, and Starch on Metabolic Syndrome Aspects in Healthy Wistar Rats. PMID:32455193
Mentholation triggers brand-specific shifts in the bacterial microbiota of commercial cigarette products. PMID:32448997
Morphology and composition of the midgut bacterial community of Scaptocoris castanea Perty, 1830 (Hemiptera: Cydnidae). PMID:32447450
Intestinal fungi are causally implicated in microbiome assembly and immune development in mice. PMID:32444671
A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities. PMID:32444602
Early-Life Intake of an Isotonic Protein Drink Improves the Gut Microbial Profile of Piglets. PMID:32443653
Relationship between true digestibility of dietary phosphorus and gastrointestinal bacteria of goats. PMID:32442173
Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection. PMID:32439901
Effects on the Ileal Microbiota of Phosphorus and Calcium Utilization, Bird Performance, and Gender in Japanese Quail. PMID:32438715
The Utility of Genomic and Transcriptomic Data in the Construction of Proxy Protein Sequence Databases for Unsequenced Tree Nuts. PMID:32438695
Electrochemical Bacterial Enrichment from Natural Seawater and Its Implications in Biocorrosion of Stainless-Steel Electrodes. PMID:32438636
Analyzing bacterial community in pit mud of Yibin Baijiu in China using high throughput sequencing. PMID:32435541
Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus. PMID:32434844
Long-Term Nutrient Enrichment of an Oligotroph-Dominated Wetland Increases Bacterial Diversity in Bulk Soils and Plant Rhizospheres. PMID:32434837
A Retrospective Case-Control Study of the Relationship between the Gut Microbiota, Enteropathy, and Child Growth. PMID:32431271
Continental-Scale Microbiome Study Reveals Different Environmental Characteristics Determining Microbial Richness, Composition, and Quantity in Hotel Rooms. PMID:32430405
Temporal transcriptional patterns of cyanophage genes suggest synchronized infection of cyanobacteria in the oceans. PMID:32430017
Diversity, Transmission, and Cophylogeny of Ledanteviruses (Rhabdoviridae: Ledantevirus) and Nycteribiid Bat Flies Parasitizing Angolan Soft-Furred Fruit Bats in Bundibugyo District, Uganda. PMID:32429498
Influence of the FIV Status and Chronic Gingivitis on Feline Oral Microbiota. PMID:32429494
The Effects of the Marine-Derived Polysaccharides Laminarin and Chitosan on Aspects of Colonic Health in Pigs Challenged with Dextran Sodium Sulphate. PMID:32429425
Metatranscriptomic Analysis of Oil-Exposed Seawater Bacterial Communities Archived by an Environmental Sample Processor (ESP). PMID:32429288
The Influence of DNA Extraction and Lipid Removal on Human Milk Bacterial Profiles. PMID:32429170
Effect of flavophospholipol on fecal microbiota in weaned pigs challenged with Salmonella Typhimurium. PMID:32426155
A phylogenetically novel cyanobacterium most closely related to Gloeobacter. PMID:32424249
Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium. PMID:32424245
Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site. PMID:32423375
Fermentation of Chicory Fructo-Oligosaccharides and Native Inulin by Infant Fecal Microbiota Attenuates Pro-Inflammatory Responses in Immature Dendritic Cells in an Infant-Age-Dependent and Fructan-Specific Way. PMID:32420676
The gut microbiota and Bergmann's rule in wild house mice. PMID:32419280
Dietary zinc source impacts intestinal morphology and oxidative stress in young broilers. PMID:32416829
Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap. PMID:32416615
Aerobic and oxygen-limited naphthalene-amended enrichments induced the dominance of Pseudomonas spp. from a groundwater bacterial biofilm. PMID:32415320
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets. PMID:32414415
Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective. PMID:32413974
Single-cell amplicon sequencing reveals community structures and transmission trends of protist-associated bacteria in a termite host. PMID:32413056
Biochar Application Alleviated Negative Plant-Soil Feedback by Modifying Soil Microbiome. PMID:32411119
Dynamic distribution of gut microbiota in meat rabbits at different growth stages and relationship with average daily gain (ADG). PMID:32410629
Longitudinal Study of Oral Microbiome Variation in Twins. PMID:32409670
Mitochondrial genome sequence of Phytophthora sansomeana and comparative analysis of Phytophthora mitochondrial genomes. PMID:32407378
Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence. PMID:32404017
The probiotic L. casei LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome. PMID:32403964
Patients infected with Mycobacterium africanum versus Mycobacterium tuberculosis possess distinct intestinal microbiota. PMID:32401750
The composition and richness of the gut microbiota differentiate the top Polish endurance athletes from sedentary controls. PMID:32401138
Housefly (Musca domestica L.) associated microbiota across different life stages. PMID:32398740
Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens. PMID:32397992
High-Throughput Sequencing Reveals a Potentially Novel Sulfurovum Species Dominating the Microbial Communities of the Seawater-Sediment Interface of a Deep-Sea Cold Seep in South China Sea. PMID:32397229
PCR-RFLP Detection and Genogroup Identification of Piscirickettsia salmonis in Field Samples. PMID:32397152
Characterization of Microbial Diversity and Community Structure in Fermentation Pit Mud of Different Ages for Production of Strong-Aroma Baijiu. PMID:32396715
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers. PMID:32395912
Microbial communities in anaerobic digesters change over time and sampling depth. PMID:32394239
A practical guide to amplicon and metagenomic analysis of microbiome data. PMID:32394199
Gut microbiota in early pregnancy among women with Hyperglycaemia vs. Normal blood glucose. PMID:32393255
Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis. PMID:32392181
Visualizing 'omic feature rankings and log-ratios using Qurro. PMID:32391521
Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions. PMID:32391081
High-Throughput Sequencing and Metabolomics Reveal Differences in Bacterial Diversity and Metabolites Between Red and White Sufu. PMID:32390991
Tree Root Zone Microbiome: Exploring the Magnitude of Environmental Conditions and Host Tree Impact. PMID:32390986
Methanogens and Methanotrophs Show Nutrient-Dependent Community Assemblage Patterns Across Tropical Peatlands of the Pastaza-Marañón Basin, Peruvian Amazonia. PMID:32390985
Niche Differentiation of Host-Associated Pelagic Microbes and Their Potential Contribution to Biogeochemical Cycling in Artificially Warmed Lakes. PMID:32390961
Captivity Influences Gut Microbiota in Crocodile Lizards (Shinisaurus crocodilurus). PMID:32390955
Coxiella-Like Endosymbiont of Rhipicephalus sanguineus Is Required for Physiological Processes During Ontogeny. PMID:32390951
Biodiversity between sand grains: Meiofauna composition across southern and western Sweden assessed by metabarcoding. PMID:32390756
Antibiotic exposure postweaning disrupts the neurochemistry and function of enteric neurons mediating colonic motor activity. PMID:32390463
Muc5ac Expression Protects the Colonic Barrier in Experimental Colitis. PMID:32385500
Bifidobacteria shape host neural circuits during postnatal development by promoting synapse formation and microglial function. PMID:32385412
Human microbiota-transplanted C57BL/6 mice and offspring display reduced establishment of key bacteria and reduced immune stimulation compared to mouse microbiota-transplantation. PMID:32385373
Bioorthogonal non-canonical amino acid tagging reveals translationally active subpopulations of the cystic fibrosis lung microbiota. PMID:32385294
The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile. PMID:32384826
Dynamics of the bacterial gut microbiota in preterm and term infants after intravenous amoxicillin/ceftazidime treatment. PMID:32380969
Long-Term β-galacto-oligosaccharides Supplementation Decreases the Development of Obesity and Insulin Resistance in Mice Fed a Western-Type Diet. PMID:32380577
Alterations of fecal microbiome characteristics by dietary soy isoflavone ingestion in growing pigs infected with porcine reproductive and respiratory syndrome virus. PMID:32379891
Long-term continuously monocropped peanut significantly changed the abundance and composition of soil bacterial communities. PMID:32377450
The RhHB1/RhLOX4 module affects the dehydration tolerance of rose flowers (Rosa hybrida) by fine-tuning jasmonic acid levels. PMID:32377364
Changes in the cervical microbiota of cervical cancer patients after primary radio-chemotherapy. PMID:32376743
16S rRNA Gene-Based Analysis Reveals the Effects of Gestational Diabetes on the Gut Microbiota of Mice During Pregnancy. PMID:32372772
Effects of Giardia lamblia Colonization and Fenbendazole Treatment on Canine Fecal Microbiota. PMID:32370821
Honeybee microbiome is stabilized in the presence of propolis. PMID:32370688
Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes. PMID:32370295
Administration of Bifidobacterium bifidum CGMCC 15068 modulates gut microbiota and metabolome in azoxymethane (AOM)/dextran sulphate sodium (DSS)-induced colitis-associated colon cancer (CAC) in mice. PMID:32367312
Green Tea and Pomegranate Extract Administered During Critical Moments of the Production Cycle Improves Blood Antiradical Activity and Alters Cecal Microbial Ecology of Broiler Chickens. PMID:32366030
Microbial Metabolic Potential of Phenol Degradation in Wastewater Treatment Plant of Crude Oil Refinery: Analysis of Metagenomes and Characterization of Isolates. PMID:32365784
Effect of Litter Treatment on Campylobacter jejuni in Broilers and on Cecal Microbiota. PMID:32365731
Housing influences tissue cytokine levels and the fecal bacterial community structure in rats. PMID:32362938
Exploring the Potential of the Microbiome as a Marker of the Geographic Origin of Fresh Seafood. PMID:32362885
Recto-Anal Junction (RAJ) and Fecal Microbiomes of Cattle Experimentally Challenged With Escherichia coli O157:H7. PMID:32362883
Comparative Genomics Suggests Mechanisms of Genetic Adaptation toward the Catabolism of the Phenylurea Herbicide Linuron in Variovorax. PMID:32359160
Microbial predictors of healing and short-term effect of debridement on the microbiome of chronic wounds. PMID:32358500
Exploring the effect of plant substrates on bacterial community structure in termite fungus-combs. PMID:32357167
Effect of stevia on the gut microbiota and glucose tolerance in a murine model of diet-induced obesity. PMID:32356872
Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study. PMID:32355187
Anthropogenic Anoxic History of the Tuvalu Atoll Recorded as Annual Black Bands in Coral. PMID:32355177
Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres. PMID:32354993
Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts. PMID:32354347
Temporal Dynamics of Bacterial Communities in a Pilot-Scale Vermireactor Fed with Distilled Grape Marc. PMID:32354197
Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota-Results from the PAGODA Trial. PMID:32354152
Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition. PMID:32352849
Population structure and microbial community diversity of two common tetillid sponges in a tropical reef lagoon. PMID:32351788
Low Nitrogen Fertilization Alter Rhizosphere Microorganism Community and Improve Sweetpotato Yield in a Nitrogen-Deficient Rocky Soil. PMID:32351491
Multiple Factors Determine the Structure of Bacterial Communities Associated With Aedes albopictus Under Artificial Rearing Conditions. PMID:32351473
Vibrio and Bacterial Communities Across a Pollution Gradient in the Bay of Bengal: Unraveling Their Biogeochemical Drivers. PMID:32351470
Variation in Snow Algae Blooms in the Coast Range of British Columbia. PMID:32351463
Intestinal Microbiota of Fattening Pigs Offered Non-Fermented and Fermented Liquid Feed with and without the Supplementation of Non-Fermented Coarse Cereals. PMID:32349407
Impact of smoking cessation, coffee and bread consumption on the intestinal microbial composition among Saudis: A cross-sectional study. PMID:32348307
Early and Short-Term Interventions in the Gut Microbiota Affects Lupus Severity, Progression, and Treatment in MRL/lpr Mice. PMID:32346376
Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria. PMID:32345973
Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens. PMID:32345738
Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection. PMID:32345342
Footprints of a Singular 22-Nucleotide RNA Ring at the Origin of Life. PMID:32344921
Island biogeography of soil bacteria and fungi: similar patterns, but different mechanisms. PMID:32341471
Influence of oil, dispersant, and pressure on microbial communities from the Gulf of Mexico. PMID:32341378
High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant. PMID:32332864
Targeting zonulin and intestinal epithelial barrier function to prevent onset of arthritis. PMID:32332732
Butyrate Conversion by Sulfate-Reducing and Methanogenic Communities from Anoxic Sediments of Aarhus Bay, Denmark. PMID:32331369
The Response of the Soil Microbiota to Long-Term Mineral and Organic Nitrogen Fertilization is Stronger in the Bulk Soil than in the Rhizosphere. PMID:32331348
Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method. PMID:32330148
Ecological Processes Affecting Long-Term Eukaryote and Prokaryote Biofilm Persistence in Nitrogen Removal from Sewage. PMID:32326022
Distinct Skin Microbiome and Skin Physiological Functions Between Bedridden Older Patients and Healthy People: A Single-Center Study in Japan. PMID:32322583
Microbiota Succession and Chemical Composition Involved in the Radish Fermentation Process in Different Containers. PMID:32318030
The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health. PMID:32318028
"Candidatus Ethanoperedens," a Thermophilic Genus of Archaea Mediating the Anaerobic Oxidation of Ethane. PMID:32317322
Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies. PMID:32316296
Bighorn sheep gut microbiomes associate with genetic and spatial structure across a metapopulation. PMID:32313214
Disentangling the mechanisms shaping the surface ocean microbiota. PMID:32312331
Cutaneous barrier leakage and gut inflammation drive skin disease in Omenn syndrome. PMID:32311393
Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples. PMID:32310938
Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions. PMID:32305066
Ecology of Lactobacilli Present in Italian Cheeses Produced from Raw Milk. PMID:32303552
Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere. PMID:32300619
Microbial modulation of host body composition and plasma metabolic profile. PMID:32300219
Capsulized faecal microbiota transplantation ameliorates post-weaning diarrhoea by modulating the gut microbiota in piglets. PMID:32299514
Resilience and limitations of MFC anodic community when exposed to antibacterial agents. PMID:32299023
Similarity of salivary microbiome in parents and adult children. PMID:32296599
Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica. PMID:32296408
The Versatility of Opportunistic Infections Caused by Gemella Isolates Is Supported by the Carriage of Virulence Factors From Multiple Origins. PMID:32296407
Gut metagenomic and short chain fatty acids signature in hypertension: a cross-sectional study. PMID:32296109
Bacterial fecal microbiota is only minimally affected by a standardized weight loss plan in obese cats. PMID:32293441
Microbial community development on model particles in the deep sulfidic waters of the Black Sea. PMID:32291864
Exoenzymes as a Signature of Microbial Response to Marine Environmental Conditions. PMID:32291350
A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli. PMID:32291345
Tracing the Origin of Planktonic Protists in an Ancient Lake. PMID:32283732
Impacts of dibenzopyrenes on bacterial community isolated from Gulf of Mexico sediment. PMID:32282132
The use of an alternative feed additive, containing benzoic acid, thymol, eugenol, and piperine, improved growth performance, nutrient and energy digestibility, and gut health in weaned piglets. PMID:32280983
Preconception helminth infection alters offspring microbiota and immune subsets in a mouse model. PMID:32277499
Impact of Poultry Processing Operating Parameters on Bacterial Transmission and Persistence on Chicken Carcasses and Their Shelf Life. PMID:32276979
Respiratory and Gut Microbiota in Commercial Turkey Flocks with Disparate Weight Gain Trajectories Display Differential Compositional Dynamics. PMID:32276973
The Saltpan Microbiome is Structured by Sediment Depth and Minimally Influenced by Variable Hydration. PMID:32276533
A Commercial Probiotic Induces Tolerogenic and Reduces Pathogenic Responses in Experimental Autoimmune Encephalomyelitis. PMID:32272791
Visualizing the effects of antibiotics on the mouse colonic mucus layer. PMID:32269946
Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil. PMID:32269551
Traditional Chinese Medicine Formula Kang Shuai Lao Pian Improves Obesity, Gut Dysbiosis, and Fecal Metabolic Disorders in High-Fat Diet-Fed Mice. PMID:32269525
Reduced microbial diversity induces larger volatile organic compound emissions from soils. PMID:32269288
A combination of monosodium glutamate and high-fat and high-fructose diets increases the risk of kidney injury, gut dysbiosis and host-microbial co-metabolism. PMID:32267892
Spatio-Temporal and Cultivar-Dependent Variations in the Cannabis Microbiome. PMID:32265895
Vertical Beta-Diversity of Bacterial Communities Depending on Water Stratification. PMID:32265880
The Microbiomes of Seven Lichen Genera Reveal Host Specificity, a Reduced Core Community and Potential as Source of Antimicrobials. PMID:32265864
Seasonal changes of circulating 25-hydroxyvitamin D correlate with the lower gut microbiome composition in inflammatory bowel disease patients. PMID:32265456
Prokaryotic and Viral Community Composition of Freshwater Springs in Florida, USA. PMID:32265327
Tracking the Dairy Microbiota from Farm Bulk Tank to Skimmed Milk Powder. PMID:32265313
Conditional Up-Regulation of SERCA2a Exacerbates RyR2-Dependent Ventricular and Atrial Arrhythmias. PMID:32260593
The Porcine Nasal Microbiota with Particular Attention to Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Germany-A Culturomic Approach. PMID:32260366
Relationships Between Gut Microbiota, Metabolome, Body Weight, and Glucose Homeostasis of Obese Dogs Fed with Diets Differing in Prebiotic and Protein Content. PMID:32260190
360-Degree Distribution of Biofilm Quantity and Community in an Operational Unchlorinated Drinking Water Distribution Pipe. PMID:32259432
De novo transcriptome assembly and data for the blue-winged teal (Spatula discors). PMID:32258268
Soil Water Contents Control the Responses of Dissolved Nitrogen Pools and Bacterial Communities to Freeze-Thaw in Temperate Soils. PMID:32258137
Rhizosphere bacterial and fungal communities during the growth of Angelica sinensis seedlings cultivated in an Alpine uncultivated meadow soil. PMID:32257632
Plant Growth-Promoting Methylobacteria Selectively Increase the Biomass of Biotechnologically Relevant Microalgae. PMID:32256478
Phocea, Pseudoflavonifractor and Lactobacillus intestinalis: Three Potential Biomarkers of Gut Microbiota That Affect Progression and Complications of Obesity-Induced Type 2 Diabetes Mellitus. PMID:32256098
The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts. PMID:32254021
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. PMID:32252814
An Optimized Metabarcoding Method for Mimiviridae. PMID:32252306
Effects of sex and chronic cigarette smoke exposure on the mouse cecal microbiome. PMID:32251484
µgreen-db: a reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria. PMID:32246067
Lactobacillus acidophilus and L. plantarum improve health status, modulate gut microbiota and innate immune response of marron (Cherax cainii). PMID:32246011
Dysbiosis of saliva microbiome in patients with oral lichen planus. PMID:32245419
Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae). PMID:32244698
Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing. PMID:32244517
An in-depth survey of the microbial landscape of the walls of a neonatal operating room. PMID:32243474
Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics. PMID:32241287
A role for gut microbiota in host niche differentiation. PMID:32238913
Metagenomic views of microbial dynamics influenced by hydrocarbon seepage in sediments of the Gulf of Mexico. PMID:32238866
A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women. PMID:32236123
Characterization of the Duodenal Mucosal Microbiome in Obese Adult Subjects by 16S rRNA Sequencing. PMID:32235377
Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens. PMID:32235351
Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota. PMID:32234071
Investigating the mycobiome of the Holcomb Creosote Superfund Site. PMID:32229362
The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice. PMID:32228448
Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f. PMID:32226422
Site-specific molecular analysis of the bacteriota on worn spectacles. PMID:32221361
Root-Bacteria Associations Boost Rhizosheath Formation in Moderately Dry Soil through Ethylene Responses. PMID:32220965
Deciphering the Root Endosphere Microbiome of the Desert Plant Alhagi sparsifolia for Drought Resistance-Promoting Bacteria. PMID:32220847
Densely Populated Water Droplets in Heavy-Oil Seeps. PMID:32220837
Multi-omics: Differential expression of IFN-γ results in distinctive mechanistic features linking chronic inflammation, gut dysbiosis, and autoimmune diseases. PMID:32220507
Effect of sulfate addition on carbon flow and microbial community composition during thermophilic digestion of cellulose. PMID:32219464
Alternative dietary protein and water temperature influence the skin and gut microbial communities of yellowtail kingfish (Seriola lalandi). PMID:32219022
Spatial heterogeneity of the shorebird gastrointestinal microbiome. PMID:32218980
Characterisation of the gut microbial community of rhesus macaques in high-altitude environments. PMID:32216756
Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam Posidonia Oceanica L. PMID:32213979
Microbiota-Derived Metabolites Suppress Arthritis by Amplifying Aryl-Hydrocarbon Receptor Activation in Regulatory B Cells. PMID:32213346
Salmonella Typhimurium infection disrupts but continuous feeding of Bacillus based probiotic restores gut microbiota in infected hens. PMID:32211190
Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening. PMID:32209719
Structural and Functional Changes in Prokaryotic Communities in Artificial Pit Mud during Chinese Baijiu Production. PMID:32209718
Metagenomic Exploration of the Marine Sponge Mycale hentscheli Uncovers Multiple Polyketide-Producing Bacterial Symbionts. PMID:32209692
Ursodeoxycholic Acid (UDCA) Mitigates the Host Inflammatory Response during Clostridioides difficile Infection by Altering Gut Bile Acids. PMID:32205405
Symbiolite formation: a powerful in vitro model to untangle the role of bacterial communities in the photosynthesis-induced formation of microbialites. PMID:32203119
Dormancy dynamics and dispersal contribute to soil microbiome resilience. PMID:32200738
Probiotic-directed modulation of gut microbiota is basal microbiome dependent. PMID:32200683
Unexpected Abundance and Diversity of Phototrophs in Mats from Morphologically Variable Microbialites in Great Salt Lake, Utah. PMID:32198176
Disinfection exhibits systematic impacts on the drinking water microbiome. PMID:32197656
Datasets of surface water microbial populations from two anthropogenically impacted sites on the Bhagirathi-Hooghly River. PMID:32195301
Effects of diversity and coalescence of species assemblages on ecosystem function at the margins of an environmental shift. PMID:32195044
Petroleum Depletion Property and Microbial Community Shift After Bioremediation Using Bacillus halotolerans T-04 and Bacillus cereus 1-1. PMID:32194536
Comparative Genome Analysis of the Lignocellulose Degrading Bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15. PMID:32194522
Analysis of the Microbiome of Rainbow Trout (Oncorhynchus mykiss) Exposed to the Pathogen Flavobacterium psychrophilum 10094. PMID:32193245
Biological sex influences susceptibility to Acinetobacter baumannii pneumonia in mice. PMID:32191638
Host Genetic and Environmental Factors Shape the Composition and Function of Gut Microbiota in Populations Living at High Altitude. PMID:32190648
Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota. PMID:32189583
Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites. PMID:32188733
The Role of Biofilms Developed under Different Anthropogenic Pressure on Recruitment of Macro-Invertebrates. PMID:32188145
Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya. PMID:32185109
Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar. PMID:32184800
Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii. PMID:32184772
FORENSIC: an Online Platform for Fecal Source Identification. PMID:32184364
The different dietary sugars modulate the composition of the gut microbiota in honeybee during overwintering. PMID:32183692
Investigating the Gut Microbiota Composition of Individuals with Attention-Deficit/Hyperactivity Disorder and Association with Symptoms. PMID:32183143
Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves. PMID:32183118
Isolation of Exopolysaccharide-Producing Yeast and Lactic Acid Bacteria from Quinoa (Chenopodium Quinoa) Sourdough Fermentation. PMID:32183117
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils. PMID:32182280
Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae. PMID:32181589
Data on community structure and diversity of the intestinal bacteria in elver and fingerling stages of wild Indonesian shortfin eel (Anguilla bicolor bicolor). PMID:32181290
Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach. PMID:32180783
Glacier algae foster ice-albedo feedback in the European Alps. PMID:32179790
Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision? PMID:32178739
Lifting the veil on arid-to-hyperarid Antarctic soil microbiomes: a tale of two oases. PMID:32178729
Evolutionary Trends in the Mitochondrial Genome of Archaeplastida: How Does the GC Bias Affect the Transition from Water to Land? PMID:32178249
Comparative analysis and gut bacterial community assemblages of grass carp and crucian carp in new lineages from the Dongting Lake area. PMID:32175674
Alterations in Gut Microbiota of Gestational Diabetes Patients During the First Trimester of Pregnancy. PMID:32175285
Association of antimicrobial resistance and gut microbiota composition in human and non-human primates at an urban ecotourism site. PMID:32175011
Leucine-Rich Immune Factor APL1 Is Associated With Specific Modulation of Enteric Microbiome Taxa in the Asian Malaria Mosquito Anopheles stephensi. PMID:32174902
The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient. PMID:32174899
Microbial Community Drivers in Anaerobic Granulation at High Salinity. PMID:32174895
Prenatal food insecurity post Hurricane Maria is associated with decreased Veillonella in the infant gut. PMID:32172280
Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount. PMID:32170218
A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures. PMID:32169095
Propionate Converting Anaerobic Microbial Communities Enriched from Distinct Biogeochemical Zones of Aarhus Bay, Denmark under Sulfidogenic and Methanogenic Conditions. PMID:32168975
In Situ Profiling of the Three Dominant Phyla Within the Human Gut Using TaqMan PCR for Pre-Hospital Diagnosis of Gut Dysbiosis. PMID:32168885
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data. PMID:32167532
Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver. PMID:32165618
Distinct Roles of Acidophiles in Complete Oxidation of High-Sulfur Ferric Leach Product of Zinc Sulfide Concentrate. PMID:32164331
Changes in the gut microbiota of mice orally exposed to methylimidazolium ionic liquids. PMID:32163446
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes. PMID:32161947
Midgut microbiota diversity of potato tuber moth associated with potato tissue consumed. PMID:32160875
Diel, daily, and spatial variation of coral reef seawater microbial communities. PMID:32160233
Gut microbial diversity and stabilizing functions enhance the plateau adaptability of Tibetan wild ass (Equus kiang). PMID:32157819
Effects of enrofloxacin treatment on the bacterial microbiota of milk from goats with persistent mastitis. PMID:32157153
New Host-Directed Therapeutics for the Treatment of Clostridioides difficile Infection. PMID:32156806
Identification of Persistent Sulfidogenic Bacteria in Shale Gas Produced Waters. PMID:32153553
Local Variability in Microbiome Composition and Growth Suggests Habitat Preferences for Two Reef-Building Cold-Water Coral Species. PMID:32153549
Changes in the Solid-, Liquid-, and Epithelium-Associated Bacterial Communities in the Rumen of Hu Lambs in Response to Dietary Urea Supplementation. PMID:32153533
Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments of Mongolian horses. PMID:32153142
Fecal microbiota transplantation for the improvement of metabolism in obesity: The FMT-TRIM double-blind placebo-controlled pilot trial. PMID:32150549
Iroki: automatic customization and visualization of phylogenetic trees. PMID:32149022
Microbiome analysis of the saliva and midgut from partially or fully engorged female adult Dermacentor silvarum ticks in China. PMID:32144639
Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn. PMID:32144394
Uncovering diversity and metabolic spectrum of animals in dead zone sediments. PMID:32144383
A randomised controlled study shows supplementation of overweight and obese adults with lactobacilli and bifidobacteria reduces bodyweight and improves well-being. PMID:32144319
The association between breastmilk oligosaccharides and faecal microbiota in healthy breastfed infants at two, six, and twelve weeks of age. PMID:32144305
Replacing fishmeal with plant protein in Atlantic salmon (Salmo salar) diets by supplementation with fish protein hydrolysate. PMID:32144276
Intestinal flora imbalance affects bile acid metabolism and is associated with gallstone formation. PMID:32143645
NOTIFy (non-toxic lyophilized field)-FISH for the identification of biological agents by Fluorescence in situ Hybridization. PMID:32142548
Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acariformes: Syringophilidae). PMID:32141700
Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients. PMID:32140143
Feed Additives Differentially Impact the Epimural Microbiota and Host Epithelial Gene Expression of the Bovine Rumen Fed Diets Rich in Concentrates. PMID:32140139
Tuning up microbiome analysis to monitor WWTPs' biological reactors functioning. PMID:32139809
Comparative Analysis of Gut Microbiota in Two Populations of Argopecten purpuratus (Lamarck, 1819) Based on 16S rRNA Gene Amplicon Data. PMID:32139558
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PMID:32134915
Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data. PMID:32134020
Trade-offs between multifunctionality and profit in tropical smallholder landscapes. PMID:32132531
Host population genetics and biogeography structure the microbiome of the sponge Cliona delitrix. PMID:32128133
Intranasal Bacterial Therapeutics Reduce Colonization by the Respiratory Pathogen Mannheimia haemolytica in Dairy Calves. PMID:32127421
Role of the intestinal microbiome in low-density polyethylene degradation by caterpillar larvae of the greater wax moth, Galleria mellonella. PMID:32126962
The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen. PMID:32123563
Local oral and nasal microbiome diversity in age-related macular degeneration. PMID:32123200
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids. PMID:32122335
Digestive Ability, Physiological Characteristics, and Rumen Bacterial Community of Holstein Finishing Steers in Response to Three Nutrient Density Diets as Fattening Phases Advanced. PMID:32120877
Characterization of dairy cow rumen bacterial and archaeal communities associated with grass silage and maize silage based diets. PMID:32119709
Influence of host phylogeny, geographical location and seed harvesting diet on the bacterial community of globally distributed Pheidole ants. PMID:32117618
NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis. PMID:32117417
Community Composition, Antifungal Activity and Chemical Analyses of Ant-Derived Actinobacteria. PMID:32117188
Exploring Rain as Source of Biological Control Agents for Fire Blight on Apple. PMID:32117187
Agricultural Selection of Wheat Has Been Shaped by Plant-Microbe Interactions. PMID:32117153
Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield. PMID:32117148
Gut Microbiota Plasticity Influences the Adaptability of Wild and Domestic Animals in Co-inhabited Areas. PMID:32117147
Bdellovibrio and Like Organisms in Lake Geneva: An Unseen Elephant in the Room? PMID:32117128
Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities. PMID:32117126
In situ identification of polyhydroxyalkanoate (PHA)-accumulating microorganisms in mixed microbial cultures under feast/famine conditions. PMID:32111932
Bacteria from the Genus Arcobacter Are Abundant in Effluent from Wastewater Treatment Plants. PMID:32111585
Effects of Eimeria tenella infection on the barrier damage and microbiota diversity of chicken cecum. PMID:32111306
Molecular Profiling of Keratinocyte Skin Tumors Links Staphylococcus aureus Overabundance and Increased Human β-Defensin-2 Expression to Growth Promotion of Squamous Cell Carcinoma. PMID:32111012
Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing. PMID:32108315
NAA and 6-BA promote accumulation of oleanolic acid by JA regulation in Achyranthes bidentata Bl. PMID:32107496
Pesticides Decrease Bacterial Diversity and Abundance of Irrigated Rice Fields. PMID:32106524
Molecular Mechanisms Underpinning Aggregation in Acidiphilium sp. C61 Isolated from Iron-Rich Pelagic Aggregates. PMID:32106516
Microhabitats are associated with diversity-productivity relationships in freshwater bacterial communities. PMID:32105331
Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate. PMID:32103096
Ganoderma lucidum cultivation affect microbial community structure of soil, wood segments and tree roots. PMID:32103052
c-FLIP is crucial for IL-7/IL-15-dependent NKp46+ ILC development and protection from intestinal inflammation in mice. PMID:32103006
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina. PMID:32103005
No Consistent Evidence for Microbiota in Murine Placental and Fetal Tissues. PMID:32102944
Growth Hormone Deficiency and Excess Alter the Gut Microbiome in Adult Male Mice. PMID:32100023
Tendentious effects of automated and manual metagenomic DNA purification protocols on broiler gut microbiome taxonomic profiling. PMID:32099013
The environment and species affect gut bacteria composition in laboratory co-cultured Anopheles gambiae and Aedes albopictus mosquitoes. PMID:32099004
The association of Chlamydia trachomatis and Mycoplasma genitalium infection with the vaginal metabolome. PMID:32098988
Improving Characterization of Understudied Human Microbiomes Using Targeted Phylogenetics. PMID:32098835
Functional traits of the gut microbiome correlated with host lipid content in a natural population of Drosophila melanogaster. PMID:32097599
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PMID:32095380
Low Protein-High Carbohydrate Diets Alter Energy Balance, Gut Microbiota Composition and Blood Metabolomics Profile in Young Pigs. PMID:32094453
Ocean acidification affects microbial community and invertebrate settlement on biofilms. PMID:32094391
Entomopathogenic nematode-associated microbiota: from monoxenic paradigm to pathobiome. PMID:32093774
pH and Phosphate Induced Shifts in Carbon Flow and Microbial Community during Thermophilic Anaerobic Digestion. PMID:32093251
First Insight into Microbiome Profiles of Myrmecophilous Beetles and Their Host, Red Wood Ant Formica polyctena (Hymenoptera: Formicidae)-A Case Study. PMID:32092972
Effects of Thymol and Thymol α-D-Glucopyranoside on Intestinal Function and Microbiota of Weaned Pigs. PMID:32092931
Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum. PMID:32086366
Diverse Microbial Community Profiles of Propionate-Degrading Cultures Derived from Different Sludge Sources of Anaerobic Wastewater Treatment Plants. PMID:32085468
Dissociation of Adaptive Thermogenesis from Glucose Homeostasis in Microbiome-Deficient Mice. PMID:32084379
Fermented Animal Source Protein as Substitution of Fishmeal on Intestinal Microbiota, Immune-Related Cytokines and Resistance to Vibrio mimicus in Freshwater Crayfish (Cherax cainii). PMID:32082185
Vaginal microbiota diverges in sows with low and high reproductive performance after porcine reproductive and respiratory syndrome vaccination. PMID:32080317
Spread of equine arteritis virus among Hucul horses with different EqCXCL16 genotypes and analysis of viral quasispecies from semen of selected stallions. PMID:32076048
Bile acid sequestration reverses liver injury and prevents progression of nonalcoholic steatohepatitis in Western diet-fed mice. PMID:32075905
A probiotic treatment increases the immune response induced by the nasal delivery of spore-adsorbed TTFC. PMID:32075660
Whole genomic sequencing and sex-dependent abundance estimation of Cardinium sp., a common and hyperabundant bacterial endosymbiont of the American house dust mite, Dermatophagoides farinae. PMID:32072355
Bacterial metagenome analysis of Mytilus galloprovincialis collected from Istanbul and Izmir coastal stations of Turkey. PMID:32072329
Microbial communities on fish eggs from Acanthopagrus schlegelii and Halichoeres nigrescens at the XuWen coral reef in the Gulf of Tonkin. PMID:32071819
Early-life intestinal microbiome in Trachemys scripta elegans analyzed using 16S rRNA sequencing. PMID:32071814
Computational methods for 16S metabarcoding studies using Nanopore sequencing data. PMID:32071706
Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. PMID:32071394
Colorectal cancer diagnostic model utilizing metagenomic and metabolomic data of stool microbial extracellular vesicles. PMID:32071370
Phylogenomic analysis of novel Diaforarchaea is consistent with sulfite but not sulfate reduction in volcanic environments on early Earth. PMID:32066874
Effect of mannan oligosaccharides on the microbiota and productivity parameters of Litopenaeus vannamei shrimp under intensive cultivation in Ecuador. PMID:32066764
Parallel Microbial Ecology of Pasteuria and Nematode Species in Scottish Soils. PMID:32063916
Microbiome-Guided Exploration of the Microbial Assemblage of the Exotic Beverage "Insect Tea" Native to Southwestern China. PMID:32063890
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed. PMID:32059747
Gut microbiota differences in Island Hispanic Puerto Ricans and mainland non-Hispanic whites during chemoradiation for rectal cancer: A pilot study. PMID:32057462
MicroRNAs regulate innate immunity against uropathogenic and commensal-like Escherichia coli infections in the surrogate insect model Galleria mellonella. PMID:32054914
Effect of acidified milk feeding on the intake, average daily gain and fecal microbiological diversity of Holstein dairy calves. PMID:32054209
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data. PMID:32053657
The global Microcystis interactome. PMID:32051648
Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions. PMID:32051469
Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes. PMID:32051429
Toxoplasma Cathepsin Protease B and Aspartyl Protease 1 Are Dispensable for Endolysosomal Protein Digestion. PMID:32051238
Community Structures and Antifungal Activity of Root-Associated Endophytic Actinobacteria in Healthy and Diseased Cucumber Plants and Streptomyces sp. HAAG3-15 as a Promising Biocontrol Agent. PMID:32050670
Trait-Based Comparison of Coral and Sponge Microbiomes. PMID:32047192
Toward Standards in Clinical Microbiota Studies: Comparison of Three DNA Extraction Methods and Two Bioinformatic Pipelines. PMID:32047058
The Vaginal Microbiome as a Tool to Predict rASRM Stage of Disease in Endometriosis: a Pilot Study. PMID:32046455
Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau. PMID:32045512
Analysis of the Bacterial Diversity of Paipa Cheese (a Traditional Raw Cow's Milk Cheese from Colombia) by High-Throughput Sequencing. PMID:32041151
Combining Citizen Science and Genomics to Investigate Tick, Pathogen, and Commensal Microbiome at Single-Tick Resolution. PMID:32038704
Microbiome Dynamics Associated With the Atacama Flowering Desert. PMID:32038589
Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing. PMID:32038585
Designing Probiotic Therapies With Broad-Spectrum Activity Against a Wildlife Pathogen. PMID:32038568
Salmon Gravlax Biopreservation With Lactic Acid Bacteria: A Polyphasic Approach to Assessing the Impact on Organoleptic Properties, Microbial Ecosystem and Volatilome Composition. PMID:32038547
Investigation of the impact of gut microbiotas on fertility of stored sperm by types of hens. PMID:32036968
Exercise with food withdrawal at thermoneutrality impacts fuel use, the microbiome, AMPK phosphorylation, muscle fibers, and thyroid hormone levels in rats. PMID:32034884
Dietary macronutrient intake and molecular-bacterial vaginosis: Role of fiber. PMID:32033845
Hydrocarbon Removal by Two Differently Developed Microbial Inoculants and Comparing Their Actions with Biostimulation Treatment. PMID:32033085
Methanogenic response to long-term permafrost thaw is determined by paleoenvironment. PMID:32031215
Red versus green leaves: transcriptomic comparison of foliar senescence between two Prunus cerasifera genotypes. PMID:32029804
Analysis of microbial diversity and composition in small intestine during different development times in ducks. PMID:32029146
Repeated inoculation with fresh rumen fluid before or during weaning modulates the microbiota composition and co-occurrence of the rumen and colon of lambs. PMID:32028889
Aquatic Thermal Reservoirs of Microbial Life in a Remote and Extreme High Andean Hydrothermal System. PMID:32028722
The Root Nodule Microbiome of Cultivated and Wild Halophytic Legumes Showed Similar Diversity but Distinct Community Structure in Yellow River Delta Saline Soils. PMID:32028717
Volatile organic compounds in the salt-lake sediments of the Tibet Plateau influence prokaryotic diversity and community assembly. PMID:32025854
Planktonic Bacterial and Archaeal Communities in an Artificially Irrigated Estuarine Wetland: Diversity, Distribution, and Responses to Environmental Parameters. PMID:32023944
Carrageenans from the Red Seaweed Sarconema filiforme Attenuate Symptoms of Diet-Induced Metabolic Syndrome in Rats. PMID:32023936
Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization. PMID:32023469
Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis. PMID:32021965
Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes. PMID:32020051
Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration. PMID:32019965
In Vitro Evaluation of Different Prebiotics on the Modulation of Gut Microbiota Composition and Function in Morbid Obese and Normal-Weight Subjects. PMID:32019174
Methane oxidation and methylotroph population dynamics in groundwater mesocosms. PMID:32017377
Preparation and characterization of site-specific dechlorinating microbial inocula capable of complete dechlorination enriched in anaerobic microcosms amended with clay mineral. PMID:32016527
A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways. PMID:32016358
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data. PMID:32016344
Microbial Community Changes in the Rhizosphere Soil of Healthy and Rusty Panax ginseng and Discovery of Pivotal Fungal Genera Associated with Rusty Roots. PMID:32016120
Gut Microbiota as Diagnostic Tools for Mirroring Disease Progression and Circulating Nephrotoxin Levels in Chronic Kidney Disease: Discovery and Validation Study. PMID:32015679
Shale gas development has limited effects on stream biology and geochemistry in a gradient-based, multiparameter study in Pennsylvania. PMID:32015108
The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development. PMID:32014065
Fecal microbiota transplantation to maintain remission in Crohn's disease: a pilot randomized controlled study. PMID:32014035
Insights on bio-degumming of kenaf bast based on metagenomic and proteomics. PMID:32013905
Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea. PMID:32013868
Environmental plasticity and colonisation history in the Atlantic salmon microbiome: A translocation experiment. PMID:32011775
Myoviridae phage PDX kills enteroaggregative Escherichia coli without human microbiome dysbiosis. PMID:32011231
The Oral Microbiota May Have Influence on Oral Cancer. PMID:32010645
Associations of gut microbiota, dietary intake, and serum short-chain fatty acids with fecal short-chain fatty acids. PMID:32010539
Integrating Computational Methods to Investigate the Macroecology of Microbiomes. PMID:32010196
Opioids Impair Intestinal Epithelial Repair in HIV-Infected Humanized Mice. PMID:32010125
Rates and Microbial Players of Iron-Driven Anaerobic Oxidation of Methane in Methanic Marine Sediments. PMID:32010098
Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi. PMID:32010072
MICHELINdb: a web-based tool for mining of helminth-microbiota interaction datasets, and a meta-analysis of current research. PMID:32008578
Methanogenic biodegradation of C9 to C12n-alkanes initiated by Smithella via fumarate addition mechanism. PMID:32008120
The gut microbiota response to helminth infection depends on host sex and genotype. PMID:32005978
Deciphering the Bifidobacterial Populations within the Canine and Feline Gut Microbiota. PMID:32005736
Dissecting the factors shaping fish skin microbiomes in a heterogeneous inland water system. PMID:32005134
High-throughput DNA sequencing of microbiota at interproximal sites. PMID:32002129
Wheat dwarfing influences selection of the rhizosphere microbiome. PMID:31996781
Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention. PMID:31996717
Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial Communities. PMID:31996419
Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation. PMID:31996418
Characterization of a sponge microbiome using an integrative genome-centric approach. PMID:31992859
Effects of Antibiotic Pretreatment of an Ulcerative Colitis-Derived Fecal Microbial Community on the Integration of Therapeutic Bacteria In Vitro. PMID:31992630
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. PMID:31988474
Fenugreek Counters the Effects of High Fat Diet on Gut Microbiota in Mice: Links to Metabolic Benefit. PMID:31988303
Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness. PMID:31980429
Effects of Dietary Non-Fibrous Carbohydrate (NFC) to Neutral Detergent Fiber (NDF) Ratio Change on Rumen Bacteria in Sheep Based on Three Generations of Full-Length Amplifiers Sequencing. PMID:31979054
Diversity and Composition of Rumen Bacteria, Fungi, and Protozoa in Goats and Sheep Living in the Same High-Altitude Pasture. PMID:31978949
Diversity, compositional and functional differences between gut microbiota of children and adults. PMID:31974429
Marine bacterial communities in the upper gulf of Thailand assessed by Illumina next-generation sequencing platform. PMID:31973711
Trophic Selective Pressures Organize the Composition of Endolithic Microbial Communities From Global Deserts. PMID:31969867
The Unique Antimicrobial Recognition and Signaling Pathways in Tardigrades with a Comparison Across Ecdysozoa. PMID:31969428
Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota. PMID:31969191
Bifidobacterium longum-fermented rice bran and rice bran supplementation affects the gut microbiome and metabolome. PMID:31965839
Transcriptional trajectories of anther development provide candidates for engineering male fertility in sorghum. PMID:31964983
Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats. PMID:31964941
Longitudinal metabolic and gut bacterial profiling of pregnant women with previous bariatric surgery. PMID:31964751
Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms. PMID:31964338
The Impact of Primer Design on Amplicon-Based Metagenomic Profiling Accuracy: Detailed Insights into Bifidobacterial Community Structure. PMID:31963501
Geographical Isolation, Buried Depth, and Physicochemical Traits Drive the Variation of Species Diversity and Prokaryotic Community in Three Typical Hypersaline Environments. PMID:31963126
Bacterial Taxa and Functions Are Predictive of Sustained Remission Following Exclusive Enteral Nutrition in Pediatric Crohn's Disease. PMID:31961432
Characterizing the microbiomes of Antarctic sponges: a functional metagenomic approach. PMID:31959785
Encapsulated cyclosporine does not change the composition of the human microbiota when assessed ex vivo and in vivo. PMID:31958048
Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. PMID:31957879
Assessing the water quality impacts of two Category-5 hurricanes on St. Thomas, Virgin Islands. PMID:31955059
Niche differentiation is spatially and temporally regulated in the rhizosphere. PMID:31953507
Phylosymbiosis across Deeply Diverging Lineages of Omnivorous Cockroaches (Order Blattodea). PMID:31953337
Effects of Synbiotic Supplement on Human Gut Microbiota, Body Composition and Weight Loss in Obesity. PMID:31952249
Investigating the endophytic bacterial diversity and community structures in seeds of genetically related maize (Zea mays L.) genotypes. PMID:31950006
The composition of the perinatal intestinal microbiota in horse. PMID:31949191
Microbiome signatures in neonatal central line associated bloodstream infections. PMID:31945114
Isolation of an archaeon at the prokaryote-eukaryote interface. PMID:31942073
The absence of intact polar lipid-derived GDGTs in marine waters dominated by Marine Group II: Implications for lipid biosynthesis in Archaea. PMID:31941956
Influences of Ingredients and Bakers on the Bacteria and Fungi in Sourdough Starters and Bread. PMID:31941818
Campylobacter Abundance in Breastfed Infants and Identification of a New Species in the Global Enterics Multicenter Study. PMID:31941810
Heavy Metals as a Factor Increasing the Functional Genetic Potential of Bacterial Community for Polycyclic Aromatic Hydrocarbon Biodegradation. PMID:31941126
Urbanization and Waterborne Pathogen Emergence in Low-Income Countries: Where and How to Conduct Surveys? PMID:31940838
Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling. PMID:31940382
Gut microbiota of red swamp crayfish Procambarus clarkii in integrated crayfish-rice cultivation model. PMID:31938890
A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index. PMID:31937639
Ruminal Microbiota and Fermentation in Response to Dietary Protein and Energy Levels in Weaned Lambs. PMID:31936592
A long-distance rRNA base pair impacts the ability of macrolide antibiotics to kill bacteria. PMID:31932436
Dysbiosis of gut microbiome affecting small intestine morphology and immune balance: a rhesus macaque model. PMID:31930784
Development of efficient electroactive biofilm in urine-fed microbial fuel cell cascades for bioelectricity generation. PMID:31929046
A Renal Clinician's Guide to the Gut Microbiota. PMID:31928802
The Microbiota in Hematologic Malignancies. PMID:31927673
DNA extraction approaches substantially influence the assessment of the human breast milk microbiome. PMID:31924794
Gut microbiota profiles in critically ill patients, potential biomarkers and risk variables for sepsis. PMID:31924126
Diversity of Betaproteobacteria revealed by novel primers suggests their role in arsenic cycling. PMID:31922045
The Initial Oral Microbiota of Neonates Among Subjects With Gestational Diabetes Mellitus. PMID:31921726
Urinary Microbiome Evaluation in Patients Presenting with Hematuria with a Focus on Exposure to Tobacco Smoke. PMID:31921713
Goethite Reduction by a Neutrophilic Member of the Alphaproteobacterial Genus Telmatospirillum. PMID:31921089
Changes in Microbiota Across Developmental Stages of Aedes koreicus, an Invasive Mosquito Vector in Europe: Indications for Microbiota-Based Control Strategies. PMID:31921019
The Impact of Soil-Applied Biochars From Different Vegetal Feedstocks on Durum Wheat Plant Performance and Rhizospheric Bacterial Microbiota in Low Metal-Contaminated Soil. PMID:31920998
Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP. PMID:31920997
Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing. PMID:31917800
Betaine addition as a potent ruminal fermentation modulator under hyperthermal and hyperosmotic conditions in vitro. PMID:31917480
Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles. PMID:31915218
Inulin from Jerusalem artichoke tubers alleviates hyperglycaemia in high-fat-diet-induced diabetes mice through the intestinal microflora improvement. PMID:31915077
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment. PMID:31911466
CAMITAX: Taxon labels for microbial genomes. PMID:31909794
N2O and CO2 emissions from a dryland wheat cropping system with long-term N fertilization and their relationships with soil C, N, and bacterial community. PMID:31907807
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES. PMID:31906254
Physiological and Metabolic Effects of Yellow Mangosteen (Garcinia dulcis) Rind in Rats with Diet-Induced Metabolic Syndrome. PMID:31906096
The Xylella fastidiosa-Resistant Olive Cultivar "Leccino" Has Stable Endophytic Microbiota during the Olive Quick Decline Syndrome (OQDS). PMID:31906093
Salivary Microbiome and Cigarette Smoking: A First of Its Kind Investigation in Jordan. PMID:31905907
Porcine Epidemic Diarrhea Altered Colonic Microbiota Communities in Suckling Piglets. PMID:31905830
Probiotic Supplementation in a Clostridium difficile-Infected Gastrointestinal Model Is Associated with Restoring Metabolic Function of Microbiota. PMID:31905795
A Deeper Look into the Biodiversity of the Extremely Acidic Copahue volcano-Río Agrio System in Neuquén, Argentina. PMID:31905732
Organohalide-respiring Desulfoluna species isolated from marine environments. PMID:31896791
RORγt+ Treg to Th17 ratios correlate with susceptibility to Giardia infection. PMID:31889073
Long-term impact of fecal transplantation in healthy volunteers. PMID:31888470
Introduction of NGS in Environmental Surveillance for Healthcare-Associated Infection Control. PMID:31888282
Secreted metabolite-mediated interactions between rhizosphere bacteria and Trichoderma biocontrol agents. PMID:31887213
Vaginal microbiome diversity and preterm birth: results of a nested case-control study in Peru. PMID:31883841
Human airway construct model is suitable for studying transcriptome changes associated with indoor air particulate matter toxicity. PMID:31883508
Tracing the fate of microplastic carbon in the aquatic food web by compound-specific isotope analysis. PMID:31882692
Distribution, Interaction and Functional Profiles of Epiphytic Bacterial Communities from the Rocky Intertidal Seaweeds, South Africa. PMID:31882618
Time-course relationship between environmental factors and microbial diversity in tobacco soil. PMID:31882572
Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov. PMID:31882205
Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines. PMID:31877898
Effects of Continuous Sugar Beet Cropping on Rhizospheric Microbial Communities. PMID:31877827
The Effect of Thermal Stress on the Bacterial Microbiome of Exaiptasia diaphana. PMID:31877636
Sexual practices have a significant impact on the vaginal microbiota of women who have sex with women. PMID:31874964
Temporal Responses of Microbial Communities to Anaerobic Soil Disinfestation. PMID:31873773
Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments. PMID:31873205
Dynamics and stabilization of the rumen microbiome in yearling Tibetan sheep. PMID:31873173
The Response of Microbiota Community to Streptococcus agalactiae Infection in Zebrafish Intestine. PMID:31866993
Exploring the Archaeome: Detection of Archaeal Signatures in the Human Body. PMID:31866971
Microbial Composition and Variability of Natural Marine Planktonic and Biofouling Communities From the Bay of Bengal. PMID:31866960
Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers. PMID:31863008
Intraspecific Diversity in the Cold Stress Response of Transposable Elements in the Diatom Leptocylindrus aporus. PMID:31861932
A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone. PMID:31858660
Effect of Helicobacter pylori on gastrointestinal microbiota: a population-based study in Linqu, a high-risk area of gastric cancer. PMID:31857433
Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface. PMID:31852806
Maternal milk and fecal microbes guide the spatiotemporal development of mucosa-associated microbiota and barrier function in the porcine neonatal gut. PMID:31852478
The diversity and abundance of fungi and bacteria on the healthy and dandruff affected human scalp. PMID:31851674
Freshwater Sponge Tubella variabilis Presents Richer Microbiota Than Marine Sponge Species. PMID:31849922
Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition. PMID:31849900
Eukaryotic Phytoplankton Contributing to a Seasonal Bloom and Carbon Export Revealed by Tracking Sequence Variants in the Western North Pacific. PMID:31849876
Strong Seasonality in Arctic Estuarine Microbial Food Webs. PMID:31849850
Characterization of microbial communities in ethanol biorefineries. PMID:31848793
Walnuts and Vegetable Oils Containing Oleic Acid Differentially Affect the Gut Microbiota and Associations with Cardiovascular Risk Factors: Follow-up of a Randomized, Controlled, Feeding Trial in Adults at Risk for Cardiovascular Disease. PMID:31848609
Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. PMID:31848272
The effect of diet and radiation on the bacterial symbiome of the melon fly, Zeugodacus cucurbitae (Coquillett). PMID:31847902
Differential responses of the acidobacterial community in the topsoil and subsoil to fire disturbance in Pinus tabulaeformis stands. PMID:31844567
Supplementation of live yeast based feed additive in early life promotes rumen microbial colonization and fibrolytic potential in lambs. PMID:31844130
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia. PMID:31844092
Improved utilization of soybean meal through fermentation with commensal Shewanella sp. MR-7 in turbot (Scophthalmus maximus L.). PMID:31842889
Diversity of bacteria associated with Hormaphidinae aphids (Hemiptera: Aphididae). PMID:31840419
Ecogenomics of the SAR11 clade. PMID:31840364
Ecological assessment of groundwater ecosystems disturbed by recharge systems using organic matter quality, biofilm characteristics, and bacterial diversity. PMID:31838704
Soil Microbial Communities in Diverse Agroecosystems Exposed to the Herbicide Glyphosate. PMID:31836576
A noncanonical binding site of linezolid revealed via molecular dynamics simulations. PMID:31832846
Changes in the Bacterial Community Structure of Denitrifying Sludge from a Recirculating Aquaculture System (RAS) After Geosmin and 2-Methylisoborneol Enrichment. PMID:31832838
AcetoBase: a functional gene repository and database for formyltetrahydrofolate synthetase sequences. PMID:31832668
Comparison of Microbial Community of Rhizosphere and Endosphere in Kiwifruit. PMID:31832051
Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax). PMID:31831775
Functional Genomics of a Symbiotic Community: Shared Traits in the Olive Fruit Fly Gut Microbiota. PMID:31830246
Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice. PMID:31830087
Microbial diversity and mineral composition of weathered serpentine rock of the Khalilovsky massif. PMID:31830070
Paneth Cell Ablation Aggravates Pancreatic and Intestinal Injuries in a Rat Model of Acute Necrotizing Pancreatitis after Normal and High-Fat Diet. PMID:31827383
Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments. PMID:31827245
Compound- and context-dependent effects of antibiotics on greenhouse gas emissions from livestock. PMID:31824677
Temporal Stability of Bacterial Communities in Antarctic Sponges. PMID:31824467
Minor Effect of Antibiotic Pre-treatment on the Engraftment of Donor Microbiota in Fecal Transplantation in Mice. PMID:31824463
Bryophytes and the symbiotic microorganisms, the pioneers of vegetation restoration in karst rocky desertification areas in southwestern China. PMID:31822979
Environmental Chemical Diethylhexyl Phthalate Alters Intestinal Microbiota Community Structure and Metabolite Profile in Mice. PMID:31822602
Dynamic Changes of Gut Microbial Communities of Bumble Bee Queens through Important Life Stages. PMID:31822600
Prevalence and phylogenetic relationship among methicillin- and vancomycin-resistant Staphylococci isolated from hospital's dairy food, food handlers, and patients. PMID:31819873
Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis. PMID:31819107
Essential functions of Runx/Cbfβ in gut conventional dendritic cells for priming Rorγt+ T cells. PMID:31818882
Effect of Low-Protein Diet and Inulin on Microbiota and Clinical Parameters in Patients with Chronic Kidney Disease. PMID:31818021
The Role of Housing Environment and Dietary Protein Source on the Gut Microbiota of Chicken. PMID:31817422
Microbial and Phenyl Acid Dynamics during the Start-up Phase of Anaerobic Straw Degradation in Meso- and Thermophilic Batch Reactors. PMID:31817383
Systematic processing of ribosomal RNA gene amplicon sequencing data. PMID:31816087
Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. PMID:31814267
Casimicrobium huifangae gen. nov., sp. nov., a Ubiquitous "Most-Wanted" Core Bacterial Taxon from Municipal Wastewater Treatment Plants. PMID:31811031
Variations in gut microbial profiles in ankylosing spondylitis: disease phenotype-related dysbiosis. PMID:31807552
Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection. PMID:31806755
The human oral cavity microbiota composition during acute tonsillitis: a cross-sectional survey. PMID:31806002
Cattle intestinal microbiota shifts following Escherichia coli O157:H7 vaccination and colonization. PMID:31805148
Characterization of the cecal microbiome composition of Wenchang chickens before and after fattening. PMID:31805086
Land Management and Microbial Seed Load Effect on Rhizosphere and Endosphere Bacterial Community Assembly in Wheat. PMID:31803160
Crop Sorghum Ensiled With Unsalable Vegetables Increases Silage Microbial Diversity. PMID:31803152
The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants. PMID:31802184
Comparative Analysis of Strategies for De Novo Transcriptome Assembly in Prokaryotes: Streptomyces clavuligerus as a Case Study. PMID:31801255
Suppression of Ribosomal Pausing by eIF5A Is Necessary to Maintain the Fidelity of Start Codon Selection. PMID:31801078
Intestinal-level anti-inflammatory bioactivities of catechin-rich green tea: Rationale, design, and methods of a double-blind, randomized, placebo-controlled crossover trial in metabolic syndrome and healthy adults. PMID:31799477
Behavioral Responses of the Invasive Fly Philornis downsi to Stimuli from Bacteria and Yeast in the Laboratory and the Field in the Galapagos Islands. PMID:31795249
Environmental DNA Sequencing Reveals a Highly Complex Eukaryote Community in Sansha Yongle Blue Hole, Xisha, South China Sea. PMID:31795180
Longitudinal Analysis of the Microbiota Composition and Enterotypes of Pigs from Post-Weaning to Finishing. PMID:31795103
High fat diet induces microbiota-dependent silencing of enteroendocrine cells. PMID:31793875
PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees. PMID:31791235
Analysis of Flagellin-Specific Adaptive Immunity Reveals Links to Dysbiosis in Patients With Inflammatory Bowel Disease. PMID:31790809
Effects of rhizoma peanut cultivars (Arachis glabrata Benth.) on the soil bacterial diversity and predicted function in nitrogen fixation. PMID:31788206
Metabolically similar cohorts of bacteria exhibit strong cooccurrence patterns with diet items and eukaryotic microbes in lizard guts. PMID:31788191
Distinct Coastal Microbiome Populations Associated With Autochthonous- and Allochthonous-Like Dissolved Organic Matter. PMID:31787958
Enrichment of Marinobacter sp. and Halophilic Homoacetogens at the Biocathode of Microbial Electrosynthesis System Inoculated With Red Sea Brine Pool. PMID:31787955
Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments. PMID:31787951
Spatial structure in the "Plastisphere": Molecular resources for imaging microscopic communities on plastic marine debris. PMID:31782619
Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples. PMID:31781817
Subsurface Microbial Ecology at Sediment-Groundwater Interface in Sulfate-Rich Playa; White Sands National Monument, New Mexico. PMID:31781077
Microbiome Response to Hot Water Treatment and Potential Synergy With Biological Control on Stored Apples. PMID:31781054
Changes in intestinal microflora in digestive tract diseases during pregnancy. PMID:31776707
A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome. PMID:31776356
Hybrid de novo transcriptome assembly of poinsettia (Euphorbia pulcherrima Willd. Ex Klotsch) bracts. PMID:31775622
The Gut Microbiota in Women Suffering from Gestational Diabetes Mellitus with the Failure of Glycemic Control by Lifestyle Modification. PMID:31772944
Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds. PMID:31768939
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis. PMID:31768029
Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists. PMID:31768028
Bifidobacterial Distribution Across Italian Cheeses Produced from Raw Milk. PMID:31766566
Environmental Filtering Drives the Assembly of Habitat Generalists and Specialists in the Coastal Sand Microbial Communities of Southern China. PMID:31766562
Natural Microbial Communities Can Be Manipulated by Artificially Constructed Biofilms. PMID:31763146
Longitudinal study of the bacterial and fungal microbiota in the human sinuses reveals seasonal and annual changes in diversity. PMID:31758066
Lactation and menstruation shift the vaginal microbiota in captive rhesus monkeys to be more similar to the male urethral microbiota. PMID:31758047
Influences of a Prolific Gut Fungus (Zancudomyces culisetae) on Larval and Adult Mosquito (Aedes aegypti)-Associated Microbiota. PMID:31757825
First Insights into the Microbiome of a Mangrove Tree Reveal Significant Differences in Taxonomic and Functional Composition among Plant and Soil Compartments. PMID:31756976
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. PMID:31754206
Effects of sampling strategy and DNA extraction on human skin microbiome investigations. PMID:31754146
16S rRNA Gene Amplicon Sequencing of Microbiota in Polybutylene Succinate Adipate-Packed Denitrification Reactors Used for Water Treatment of Land-Based Recirculating Aquaculture Systems. PMID:31753952
Complete Genome Sequence of Curtobacterium sp. Strain SGAir0471, Isolated from Singapore Air Samples. PMID:31753940
Dispersant Enhances Hydrocarbon Degradation and Alters the Structure of Metabolically Active Microbial Communities in Shallow Seawater From the Northeastern Gulf of Mexico. PMID:31749769
Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys. PMID:31743949
Corn oil supplementation enhances hydrogen use for biohydrogenation, inhibits methanogenesis, and alters fermentation pathways and the microbial community in the rumen of goats. PMID:31740932
Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem. PMID:31740752
Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal Communities. PMID:31740751
Enzymatically Digested Food Waste Altered Fecal Microbiota But Not Meat Quality and Carcass Characteristics of Growing-Finishing Pigs. PMID:31739461
The Developmental Stage Symbionts of the Pea Aphid-Feeding Chrysoperla sinica (Tjeder). PMID:31736900
Structural and Functional Dynamics of Soil Microbes following Spruce Beetle Infestation. PMID:31732575
Global Trends in Marine Plankton Diversity across Kingdoms of Life. PMID:31730851
Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks. PMID:31730472
Phylogenetic analysis revealed that Salmonella Typhimurium ST313 isolated from humans and food in Brazil presented a high genomic similarity. PMID:31728978
Integrated Counts of Carbohydrate-Active Protein Domains as Metabolic Readouts to Distinguish Probiotic Biology and Human Fecal Metagenomes. PMID:31727954
Indigo Naturalis Ameliorates Dextran Sulfate Sodium-Induced Colitis in Mice by Modulating the Intestinal Microbiota Community. PMID:31726738
Cross-kingdom analysis of nymphal-stage Ixodes scapularis microbial communities in relation to Borrelia burgdorferi infection and load. PMID:31722384
Latitudinal gradient of cyanobacterial diversity in tidal flats. PMID:31721816
The gut microbiome of freshwater Unionidae mussels is determined by host species and is selectively retained from filtered seston. PMID:31721801
Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA. PMID:31720128
Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts. PMID:31719844
Biodiversity of protists and nematodes in the wild nonhuman primate gut. PMID:31719654
Dietary energy and protein levels influenced the growth performance, ruminal morphology and fermentation and microbial diversity of lambs. PMID:31719633
Meta-16S rRNA Gene Phylogenetic Reconstruction Reveals the Astonishing Diversity of Cosmopolitan Myxobacteria. PMID:31717918
Biotechnological Potential of Bacteria Isolated from the Sea Cucumber Holothuria leucospilota and Stichopus vastus from Lampung, Indonesia. PMID:31717405
Modified clays alter diversity and respiration profile of microorganisms in long-term hydrocarbon and metal co-contaminated soil. PMID:31713319
Unlinked rRNA genes are widespread among bacteria and archaea. PMID:31712737
Chemotherapy-induced neuroinflammation is associated with disrupted colonic and bacterial homeostasis in female mice. PMID:31712703
A Bioinformatics Guide to Plant Microbiome Analysis. PMID:31708944
Skin Exposure to Narrow Band Ultraviolet (UVB) Light Modulates the Human Intestinal Microbiome. PMID:31708890
Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework. PMID:31708883
The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions. PMID:31708882
Dynamics of microbial contaminants is driven by selection during ethanol production. PMID:31705383
Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sediments. PMID:31704947
Honey bee microbiome associated with different hive and sample types over a honey production season. PMID:31703071
The bacterial community in potato is recruited from soil and partly inherited across generations. PMID:31703062
Bacterial communities in the solid, liquid, dorsal, and ventral epithelium fractions of yak (Bos grunniens) rumen. PMID:31701637
Sulfide level in municipal sludge digesters affects microbial community response to long-chain fatty acid loads. PMID:31700542
Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity. PMID:31700196
Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants. PMID:31699756
Microbial communities of the house fly Musca domestica vary with geographical location and habitat. PMID:31699144
Uncovering Bifidobacteria via Targeted Sequencing of the Mammalian Gut Microbiota. PMID:31698863
Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598. PMID:31697692
MGnify: the microbiome analysis resource in 2020. PMID:31696235
Comparison of oral microbiome profiles in stimulated and unstimulated saliva, tongue, and mouth-rinsed water. PMID:31695050
Evidence that intra-amniotic infections are often the result of an ascending invasion - a molecular microbiological study. PMID:31693497
Rectal swabs are a reliable proxy for faecal samples in infant gut microbiota research based on 16S-rRNA sequencing. PMID:31690798
Lignin degradation potential and draft genome sequence of Trametes trogii S0301. PMID:31687044
Home chemical and microbial transitions across urbanization. PMID:31686026
The planktonic protist interactome: where do we stand after a century of research? PMID:31685936
Metagenomic Characterization Reveals Pronounced Seasonality in the Diversity and Structure of the Phyllosphere Bacterial Community in a Mediterranean Ecosystem. PMID:31683878
Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp. PMID:31682601
Respiratory Dysbiosis in Canine Bacterial Pneumonia: Standard Culture vs. Microbiome Sequencing. PMID:31681810
An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. PMID:31681429
The Impact of Type VI Secretion System, Bacteriocins and Antibiotics on Bacterial Competition of Pectobacterium carotovorum subsp. brasiliense and the Regulation of Carbapenem Biosynthesis by Iron and the Ferric-Uptake Regulator. PMID:31681235
Discovery of High Abundances of Aster-Like Nanoparticles in Pelagic Environments: Characterization and Dynamics. PMID:31681233
Changes in stool frequency following chicory inulin consumption, and effects on stool consistency, quality of life and composition of gut microbiota. PMID:31680713
Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits. PMID:31676863
Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life. PMID:31676793
Improved 18S and 28S rDNA primer sets for NGS-based parasite detection. PMID:31673037
Profiling Bacterial Diversity and Potential Pathogens in Wastewater Treatment Plants Using High-Throughput Sequencing Analysis. PMID:31671809
The effect of reverse transcription enzymes and conditions on high throughput amplicon sequencing of the 16S rRNA. PMID:31667010
Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area. PMID:31666740
Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil. PMID:31666614
The Role of Ames Dwarfism and Calorie Restriction on Gut Microbiota. PMID:31665244
Analysis of prognosis, genome, microbiome, and microbial metabolome in different sites of colorectal cancer. PMID:31665031
Microaerobic conditions caused the overwhelming dominance of Acinetobacter spp. and the marginalization of Rhodococcus spp. in diesel fuel/crude oil mixture-amended enrichment cultures. PMID:31664492
Exploring possible associations of the intestine bacterial microbiome with the pre-weaned weight gaining performance of piglets in intensive pig production. PMID:31664137
Methods in Lung Microbiome Research. PMID:31661299
Aging progression of human gut microbiota. PMID:31660868
Successful Fecal Microbiota Transplantation in a Patient Suffering From Irritable Bowel Syndrome and Recurrent Urinary Tract Infections. PMID:31660360
Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands. PMID:31659233
Comparison of Different Invasive and Non-Invasive Methods to Characterize Intestinal Microbiota throughout a Production Cycle of Broiler Chickens. PMID:31658673
Survey of bacteria associated with western corn rootworm life stages reveals no difference between insects reared in different soils. PMID:31653954
Intestinal microbiome composition and its relation to joint pain and inflammation. PMID:31653850
Rapid Shifts in Bacterial Community Assembly under Static and Dynamic Hydration Conditions in Porous Media. PMID:31653789
Metagenomics Reveals Bacterial and Archaeal Adaptation to Urban Land-Use: N Catabolism, Methanogenesis, and Nutrient Acquisition. PMID:31649656
Caecal Microbiota of Experimentally Campylobacter jejuni-Infected Chickens at Different Ages. PMID:31649644
Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO2 Fixation and 16S Tags of the Transcriptome in Incubation Experiments. PMID:31649639
Complete Genome Sequence of the Multidrug-Resistant Pseudomonas aeruginosa Endemic Houston-1 Strain, Isolated from a Pediatric Patient with Cystic Fibrosis and Assembled Using Oxford Nanopore and Illumina Sequencing. PMID:31649076
Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean. PMID:31645670
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). PMID:31644802
Bacterial communities associated with the midgut microbiota of wild Anopheles gambiae complex in Burkina Faso. PMID:31643044
Diat.barcode, an open-access curated barcode library for diatoms. PMID:31641158
Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons. PMID:31640783
Associations between dietary micronutrient intake and molecular-Bacterial Vaginosis. PMID:31640725
Prediction of microbial communities for urban metagenomics using neural network approach. PMID:31639050
Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses. PMID:31637220
High-Throughput Detection of Bacterial Community and Its Drug-Resistance Profiling From Local Reclaimed Wastewater Plants. PMID:31637218
Effects of particle size of ground alfalfa hay on caecal bacteria and archaea populations of rabbits. PMID:31637140
A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock. PMID:31636702
Analysis of the Gut Microbiome of Wild and Captive Père David's Deer. PMID:31636626
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes. PMID:31636614
Transient exposure to novel high temperatures reshapes coastal phytoplankton communities. PMID:31636366
GenBank is a reliable resource for 21st century biodiversity research. PMID:31636175
Low Temperature (15 °C) Reduces Bacterial Diversity and Prolongs the Preservation Time of Volvariella volvacea. PMID:31635138
Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking. PMID:31635111
Phyllosphere Fungal Communities of Plum and Antifungal Activity of Indigenous Phenazine-Producing Pseudomonas synxantha Against Monilinia laxa. PMID:31632384
Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. PMID:31630686
Inferences of environmental and biotic effects on patterns of eukaryotic alpha and beta diversity for the spring systems of Ash Meadows, Nevada. PMID:31628545
Matrotrophic viviparity constrains microbiome acquisition during gestation in a live-bearing cockroach, Diploptera punctata. PMID:31624569
Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China. PMID:31624498
Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species. PMID:31624344
Niche partitioning of methane-oxidizing bacteria along the oxygen-methane counter gradient of stratified lakes. PMID:31624343
Host determinants of among-species variation in microbiome composition in drosophilid flies. PMID:31624341
Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs. PMID:31624340
Microbial Diversity of the Red Sea Urchin Loxechinus albus during Controlled Farming in Puerto Montt, Chile, Using 16S rRNA Gene Amplicon Sequencing. PMID:31624162
Bacterial and Fungal Diversity Inside the Medieval Building Constructed with Sandstone Plates and Lime Mortar as an Example of the Microbial Colonization of a Nutrient-Limited Extreme Environment (Wawel Royal Castle, Krakow, Poland). PMID:31623322
Gastro-intestinal and oral microbiome signatures associated with healthy aging. PMID:31620923
Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. PMID:31619759
Effects of Nutritional Deprivation and Re-Alimentation on the Feed Efficiency, Blood Biochemistry, and Rumen Microflora in Yaks (Bos grunniens). PMID:31618914
Peptidoglycan Recognition Protein 4 Limits Bacterial Clearance and Inflammation in Lungs by Control of the Gut Microbiota. PMID:31616404
Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. PMID:31616394
The capacity of wastewater treatment plants drives bacterial community structure and its assembly. PMID:31616020
Metabarcoding assessment of prokaryotic and eukaryotic taxa in sediments from Stellwagen Bank National Marine Sanctuary. PMID:31616016
Korean Traditional Medicine (Jakyakgamcho-tang) Ameliorates Colitis by Regulating Gut Microbiota. PMID:31615012
Variation in Actinobacterial Community Composition and Potential Function in Different Soil Ecosystems Belonging to the Arid Heihe River Basin of Northwest China. PMID:31608036
Prokaryotic community in Pleistocene ice wedges of Mammoth Mountain. PMID:31606813
Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots. PMID:31606033
Lanthanide-Dependent Methylotrophs of the Family Beijerinckiaceae: Physiological and Genomic Insights. PMID:31604774
Succession of Microbial Decomposers Is Determined by Litter Type, but Site Conditions Drive Decomposition Rates. PMID:31604765
Effects of Tropilaelaps mercedesae on midgut bacterial diversity of Apis mellifera. PMID:31602536
Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure. PMID:31602411
Positive effect of an electrolyzed reduced water on gut permeability, fecal microbiota and liver in an animal model of Parkinson's disease. PMID:31600256
Mastiha (Pistacia lentiscus) Improves Gut Microbiota Diversity, Hepatic Steatosis, and Disease Activity in a Biopsy-Confirmed Mouse Model of Advanced Non-Alcoholic Steatohepatitis and Fibrosis. PMID:31599067
Responses of Rhizospheric Microbial Communities of Native and Alien Plant Species to Cuscuta Parasitism. PMID:31598761
Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers. PMID:31598689
Temporal evolution of the microbiome, immune system and epigenome with disease progression in ALS mice. PMID:31597644
Diversity, Tissue Localization, and Infection Pattern of Bacterial Symbionts of the White-Backed Planthopper, Sogatella furcifera (Hemiptera: Delphacidae). PMID:31595328
Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding. PMID:31595089
Peptidoglycan Production by an Insect-Bacterial Mosaic. PMID:31587897
Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. PMID:31587639
Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru. PMID:31585991
Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers. PMID:31584976
Specific Wheat Fractions Influence Hepatic Fat Metabolism in Diet-Induced Obese Mice. PMID:31581733
Temporal Dynamics in Rumen Bacterial Community Composition of Finishing Steers during an Adaptation Period of Three Months. PMID:31581417
Volatile-mediated antagonism of soil bacterial communities against fungi. PMID:31580006
Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy. PMID:31579593
Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau. PMID:31579584
Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands. PMID:31578453
Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus. PMID:31577799
Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes. PMID:31575666
An evolutionary signal to fungal succession during plant litter decay. PMID:31574146
Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents. PMID:31573126
Temperature dependence of parasitic infection and gut bacterial communities in bumble bees. PMID:31573120
Effects of grape pomace and seed polyphenol extracts on the recovery of gut microbiota after antibiotic treatment in high-fat diet-fed mice. PMID:31572583
Impact of a Nomadic Pastoral Lifestyle on the Gut Microbiome in the Fulani Living in Nigeria. PMID:31572342
Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota. PMID:31572332
Tracking Mangrove Oil Bioremediation Approaches and Bacterial Diversity at Different Depths in an in situ Mesocosms System. PMID:31572322
The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge. PMID:31572309
Faecal microbiota and functional capacity associated with weaning weight in meat rabbits. PMID:31571427
An examination of data from the American Gut Project reveals that the dominance of the genus Bifidobacterium is associated with the diversity and robustness of the gut microbiota. PMID:31568677
Diets with and without edible cricket support a similar level of diversity in the gut microbiome of dogs. PMID:31565574
Plant host and drought shape the root associated fungal microbiota in rice. PMID:31565550
Proteobacteria Acts as a Pathogenic Risk-Factor for Chronic Abdominal Pain and Diarrhea in Post-Cholecystectomy Syndrome Patients: A Gut Microbiome Metabolomics Study. PMID:31563920
Correlation between invasive microbiota in margin-surrounding mucosa and anastomotic healing in patients with colorectal cancer. PMID:31558976
Rice bran supplementation modulates growth, microbiota and metabolome in weaning infants: a clinical trial in Nicaragua and Mali. PMID:31558739
Geographical location influences the composition of the gut microbiota in wild house mice (Mus musculus domesticus) at a fine spatial scale. PMID:31557179
Taxonomy, Diet, and Developmental Stage Contribute to the Structuring of Gut-Associated Bacterial Communities in Tephritid Pest Species. PMID:31555239
Differences in Applied Redox Potential on Cathodes Enrich for Diverse Electrochemically Active Microbial Isolates From a Marine Sediment. PMID:31555224
Comparison of the microbial composition of African fermented foods using amplicon sequencing. PMID:31554860
Vaginal Microbiome Signature Is Associated With Spontaneous Preterm Delivery. PMID:31552254
A Metataxonomic Tool to Investigate the Diversity of Treponema. PMID:31552004
Interaction Between Conservation Tillage and Nitrogen Fertilization Shapes Prokaryotic and Fungal Diversity at Different Soil Depths: Evidence From a 23-Year Field Experiment in the Mediterranean Area. PMID:31551981
Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria. PMID:31551953
Soil Metatranscriptomes Under Long-Term Experimental Warming and Drying: Fungi Allocate Resources to Cell Metabolic Maintenance Rather Than Decay. PMID:31551941
Antibiotics as chemical warfare across multiple taxonomic domains and trophic levels in brown food webs. PMID:31551054
Microbiota fingerprints within the oral cavity of cetaceans as indicators for population biomonitoring. PMID:31548611
Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets. PMID:31547478
Limited changes in the fecal microbiome composition of laying hens after oral inoculation with wild duck feces. PMID:31541252
Neurobehavioral dysfunction in non-alcoholic steatohepatitis is associated with hyperammonemia, gut dysbiosis, and metabolic and functional brain regional deficits. PMID:31539420
Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals. PMID:31537794
Diel patterning in the bacterial community associated with the sea anemone Nematostella vectensis. PMID:31534705
Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus. PMID:31533247
Air-side ammonia stripping coupled to anaerobic digestion indirectly impacts anaerobic microbiome. PMID:31532080
Effects of a vinegar-based multi-micronutrient supplement in rats: a multi-pronged assessment of dietary impact. PMID:31531127
Plant invader alters soil food web via changes to fungal resources. PMID:31529212
High-throughput amplicon sequencing datasets of the metacommunity DNA of the gut microbiota of naturally occurring and laboratory aquaculture green sea urchins Lytechinus variegatus. PMID:31528670
Sputum microbiota and inflammation at stable state and during exacerbations in a cohort of chronic obstructive pulmonary disease (COPD) patients. PMID:31527888
Marked variations in gut microbiota and some innate immune responses of fresh water crayfish, marron (Cherax cainii, Austin 2002) fed dietary supplementation of Clostridium butyricum. PMID:31523510
The differences of bacterial communities in the tissues between healthy and diseased Yesso scallop (Patinopecten yessoensis). PMID:31522290
Diversity and functional profile of bacterial communities at Lancaster acid mine drainage dam, South Africa as revealed by 16S rRNA gene high-throughput sequencing analysis. PMID:31520125
Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling. PMID:31518350
Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops. PMID:31515535
Microbial characterization and fermentative characteristics of crop maize ensiled with unsalable vegetables. PMID:31515497
Taste perception and oral microbiota are associated with obesity in children and adolescents. PMID:31509575
Impact of cleaning and disinfection procedures on microbial ecology and Salmonella antimicrobial resistance in a pig slaughterhouse. PMID:31506516
Succession of oral microbiota community as a tool to estimate postmortem interval. PMID:31506511
Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes. PMID:31506265
Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry. PMID:31506260
A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades. PMID:31506037
Microbial Assemblages in Pressurized Antarctic Brine Pockets (Tarn Flat, Northern Victoria Land): A Hotspot of Biodiversity and Activity. PMID:31505750
Characterization of the microbiome and bioluminescent symbionts across life stages of Ceratioid Anglerfishes of the Gulf of Mexico. PMID:31504465
Characterization of ecto- and endoparasite communities of wild Mediterranean teleosts by a metabarcoding approach. PMID:31504055
Microbiome as an Immunological Modifier. PMID:31502171
Meta-taxonomic analysis of prokaryotic and eukaryotic gut flora in stool samples from visceral leishmaniasis cases and endemic controls in Bihar State India. PMID:31490933
Metagenomic and culturomic analysis of gut microbiota dysbiosis during Clostridium difficile infection. PMID:31488869
16S rRNA Gene Amplicon Sequencing of Microbial Communities Involved in Anaerobic Bulking in a Mesophilic Expanded Granular Sludge Bed Reactor Treating Wastewater Discharged from a Japanese-Style Thickened Worcestershire Sauce-Producing Factory. PMID:31488533
Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes. PMID:31488062
The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans. PMID:31484996
Temporal variation of eukaryotic community structures in UASB reactor treating domestic sewage as revealed by 18S rRNA gene sequencing. PMID:31484981
Microbiomic differences at cancer-prone oral mucosa sites with marijuana usage. PMID:31481657
Effect of increasing levels of rice distillers' by-product on growth performance, nutrient digestibility, blood profile and colonic microbiota of weaned piglets. PMID:31480165
Drivers of human gut microbial community assembly: coadaptation, determinism and stochasticity. PMID:31477821
Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale. PMID:31477171
The characteristics of gut microbiota and commensal Enterobacteriaceae isolates in tree shrew (Tupaia belangeri). PMID:31477004
Different Gut Microbial Profiles in Sub-Saharan African and South Asian Women of Childbearing Age Are Primarily Associated With Dietary Intakes. PMID:31474951
Temporal Variation in the Microbiome of Acropora Coral Species Does Not Reflect Seasonality. PMID:31474944
Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids. PMID:31472697
The study evaluating the effect of probiotic supplementation on the mental status, inflammation, and intestinal barrier in major depressive disorder patients using gluten-free or gluten-containing diet (SANGUT study): a 12-week, randomized, double-blind, and placebo-controlled clinical study protocol. PMID:31472678
Cadmium and Selenate Exposure Affects the Honey Bee Microbiome and Metabolome, and Bee-Associated Bacteria Show Potential for Bioaccumulation. PMID:31471302
Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids. PMID:31467316
Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics. PMID:31462278
Comparative Genomics of Antibiotic-Resistant Uropathogens Implicates Three Routes for Recurrence of Urinary Tract Infections. PMID:31455657
Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition. PMID:31455638
Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic). PMID:31454446
Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture-dependent and culture-independent analysis. PMID:31454177
In-silico Design of DNA Oligonucleotides: Challenges and Approaches. PMID:31452858
Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease. PMID:31451108
Effects of Land Transport Stress on Variations in Ruminal Microbe Diversity and Immune Functions in Different Breeds of Cattle. PMID:31450840
Identification of a Shared Microbiomic and Metabolomic Profile in Systemic Autoimmune Diseases. PMID:31450824
The Association Between Inflammaging and Age-Related Changes in the Ruminal and Fecal Microbiota Among Lactating Holstein Cows. PMID:31447814
Diversity, Distribution and Co-occurrence Patterns of Bacterial Communities in a Karst Cave System. PMID:31447801
Bacterial Succession in Salt Marsh Soils Along a Short-term Invasion Chronosequence of Spartina alterniflora in the Yellow River Estuary, China. PMID:31444524
Baltic Sea methanogens compete with acetogens for electrons from metallic iron. PMID:31444483
A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine. PMID:31443334
Severe Intestinal Dysbiosis in Rat Models of Short Bowel Syndrome with Ileocecal Resection. PMID:31441001
Data on taxonomic annotation and diversity of 18S rRNA gene amplicon libraries derived from high throughput sequencing. PMID:31440544
Variations in Vaginal, Penile, and Oral Microbiota After Sexual Intercourse: A Case Report. PMID:31440511
Community Composition and Diversity of Intestinal Microbiota in Captive and Reintroduced Przewalski's Horse (Equus ferus przewalskii). PMID:31440229
Wheat Straw Return Influences Nitrogen-Cycling and Pathogen Associated Soil Microbiota in a Wheat-Soybean Rotation System. PMID:31440226
Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. PMID:31438955
TreeCluster: Clustering biological sequences using phylogenetic trees. PMID:31437182
Gut Microbiome Signatures Are Predictive of Infectious Risk Following Induction Therapy for Acute Myeloid Leukemia. PMID:31436833
Early Life Stages of a Common Broadcast Spawning Coral Associate with Specific Bacterial Communities Despite Lack of Internalized Bacteria. PMID:31435691
The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities. PMID:31431193
A Tripartite Microbial-Environment Network Indicates How Crucial Microbes Influence the Microbial Community Ecology. PMID:31428833
First Insights Into Bacterial Gastrointestinal Tract Communities of the Eurasian Beaver (Castor fiber). PMID:31428060
Spatial heterogeneity of belowground microbial communities linked to peatland microhabitats with different plant dominants. PMID:31425589
Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application. PMID:31425534
Oral vancomycin treatment does not alter markers of postprandial inflammation in lean and obese subjects. PMID:31423751
Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows. PMID:31418488
Agarwood wound locations provide insight into the association between fungal diversity and volatile compounds in Aquilaria sinensis. PMID:31417726
Dietary Oligosaccharides Attenuate Stress-Induced Disruptions in Immune Reactivity and Microbial B-Vitamin Metabolism. PMID:31417554
Viral Regulation on Bacterial Community Impacted by Lysis-Lysogeny Switch: A Microcosm Experiment in Eutrophic Coastal Waters. PMID:31417537
Evidence of Spatial Homogeneity in an Electromethanogenic Cathodic Microbial Community. PMID:31417533
Growth Stage-dependent Bacterial Communities in Soybean Plant Tissues: Methylorubrum Transiently Dominated in the Flowering Stage of the Soybean Shoot. PMID:31413227
Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs. PMID:31413226
Antibiotic resistant bacteria and commensal fungi are common and conserved in the mosquito microbiome. PMID:31412044
Edaphic and host plant factors are linked to the composition of arbuscular mycorrhizal fungal communities in the root zone of endangered Ulmus chenmoui Cheng in China. PMID:31410288
Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota. PMID:31409660
What Goes Up Might Come Down: the Spectacular Spread of an Endosymbiont Is Followed by Its Decline a Decade Later. PMID:31407021
Transcriptomic Analysis of Marine Gastropod Hemifusus tuba Provides Novel Insights into Conotoxin Genes. PMID:31405144
Negative Plant-Soil Feedback Driven by Re-assemblage of the Rhizosphere Microbiome With the Growth of Panax notoginseng. PMID:31404300
Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly. PMID:31400207
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human. PMID:31400206
Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water. PMID:31399606
Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome. PMID:31399563
Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes. PMID:31398337
Benchmarking Metagenomics Tools for Taxonomic Classification. PMID:31398336
Spatial heterogeneity and hydrological fluctuations drive bacterioplankton community composition in an Amazon floodplain system. PMID:31398199
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing. PMID:31396571
Xiao-Qing-Long Tang Prevents Cardiomyocyte Hypertrophy, Fibrosis, and the Development of Heart Failure with Preserved Ejection Faction in Rats by Modulating the Composition of the Gut Microbiota. PMID:31396536
Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedalea. PMID:31396197
Linggui Zhugan Formula Improves Glucose and Lipid Levels and Alters Gut Microbiota in High-Fat Diet-Induced Diabetic Mice. PMID:31396097
Complete Genome Sequence of Brachybacterium sp. Strain SGAir0954, Isolated from Singapore Air. PMID:31395638
Complete Genome Sequence of Agrococcus sp. Strain SGAir0287, Isolated from Tropical Air Collected in Singapore. PMID:31395637
Geomicrobiology of a seawater-influenced active sulfuric acid cave. PMID:31393920
Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets. PMID:31391094
High proportions of bacteria and archaea across most biomes remain uncultured. PMID:31388130
The core microbiome of sessile ciliate Stentor coeruleus is not shaped by the environment. PMID:31388025
Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts. PMID:31379766
Seasonal Changes of Airborne Bacterial Communities Over Tokyo and Influence of Local Meteorology. PMID:31379765
Archaeal Communities in Deep Terrestrial Subsurface Underneath the Deccan Traps, India. PMID:31379755
Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits. PMID:31378759
Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature. PMID:31377832
Diluted conventional media improve the microbial cultivability from aquarium seawater. PMID:31376108
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. PMID:31375809
Functional Differences in the Blooming Phytoplankton Heterosigma akashiwo and Prorocentrum donghaiense Revealed by Comparative Metaproteomics. PMID:31375486
Fecal Microbiotas of Indonesian and New Zealand Children Differ in Complexity and Bifidobacterial Taxa during the First Year of Life. PMID:31375480
Data on microbial community composition of sludge from high altitude wastewater treatment plants determined by 16S rRNA gene sequencing. PMID:31372405
Humoral immune responses against gut bacteria in dogs with inflammatory bowel disease. PMID:31369623
Patterned progression of gut microbiota associated with necrotizing enterocolitis and late onset sepsis in preterm infants: a prospective study in a Chinese neonatal intensive care unit. PMID:31367483
Human placenta has no microbiome but can contain potential pathogens. PMID:31367035
N2O formation by nitrite-induced (chemo)denitrification in coastal marine sediment. PMID:31366952
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. PMID:31366912
Microbiota and gut ultrastructure of Anisakis pegreffii isolated from stranded cetaceans in the Adriatic Sea. PMID:31362767
Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival. PMID:31361744
Viruses as key reservoirs of antibiotic resistance genes in the environment. PMID:31358910
Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway. PMID:31358825
Editing of the gut microbiota reduces carcinogenesis in mouse models of colitis-associated colorectal cancer. PMID:31358565
rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing. PMID:31357928
An Expanded Ribosomal Phylogeny of Cyanobacteria Supports a Deep Placement of Plastids. PMID:31354692
Highly Diverse Aquatic Microbial Communities Separated by Permafrost in Greenland Show Distinct Features According to Environmental Niches. PMID:31354674
The Seasonal Dynamics and the Influence of Human Activities on Campus Outdoor Microbial Communities. PMID:31354673
Comparing the Microbial Community in Four Stomach of Dairy Cattle, Yellow Cattle and Three Yak Herds in Qinghai-Tibetan Plateau. PMID:31354656
Effects of Hardwood Biochar on Methane Production, Fermentation Characteristics, and the Rumen Microbiota Using Rumen Simulation. PMID:31354652
Gut Microbiota Differs Between Parkinson's Disease Patients and Healthy Controls in Northeast China. PMID:31354427
Sulfide-driven denitrification: detecting active microorganisms in fed-batch enrichment cultures by DNA stable isotope probing. PMID:31346912
16S rRNA Gene Amplicon Profiling of Anaerobic Bulking-Associated Prokaryotic Microbiota in a Mesophilic Expanded Granular Sludge Bed Reactor for Beverage Wastewater Treatment. PMID:31346028
Draft Genome Sequence of Enterobacter sp. Strain AD2-3, Isolated from a Postmining Site in Benguet, Philippines. PMID:31346017
Coupled steel slag and biochar amendment correlated with higher methanotrophic abundance and lower CH4 emission in subtropical paddies. PMID:31342217
What is new and relevant for sequencing-based microbiome research? A mini-review. PMID:31341676
Novel insights into plant-associated archaea and their functioning in arugula (Eruca sativa Mill.). PMID:31341668
Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests. PMID:31338079
Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient. PMID:31338073
Insights into the Potential of the Atlantic Cod Gut Microbiome as Biomarker of Oil Contamination in the Marine Environment. PMID:31336609
Developmental exposure to polychlorinated biphenyls (PCBs) in the maternal diet causes host-microbe defects in weanling offspring mice. PMID:31336350
Chronic obstructive pulmonary disease upper airway microbiome is associated with select clinical characteristics. PMID:31335912
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures. PMID:31333598
Defining microbial biomarkers for risk of preterm labor. PMID:31332740
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. PMID:31332186
Temperature and insulin signaling regulate body size in Hydra by the Wnt and TGF-beta pathways. PMID:31332174
Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response. PMID:31332169
Host genetics and geography influence microbiome composition in the sponge Ircinia campana. PMID:31325164
Kinetics and Identities of Extracellular Peptidases in Subsurface Sediments of the White Oak River Estuary, North Carolina. PMID:31324636
Comparative transcriptome analysis of translucent flesh disorder in mangosteen (Garcinia mangostana L.) fruits in response to different water regimes. PMID:31323060
T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. PMID:31320426
Prokaryotic Community Structures in a Thermophilic Anaerobic Digestion Reactor Converting Poly(l-Lactic Acid) for a Long Period Revealed by 16S rRNA Gene Amplicon Sequencing. PMID:31320420
Effect of temperature on methane oxidation and community composition in landfill cover soil. PMID:31317292
A New Isolate of Pediococcus pentosaceus (SL001) With Antibacterial Activity Against Fish Pathogens and Potency in Facilitating the Immunity and Growth Performance of Grass Carps. PMID:31316478
Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer. PMID:31316095
Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa. PMID:31315576
Modified apple polysaccharide regulates microbial dysbiosis to suppress high-fat diet-induced obesity in C57BL/6J mice. PMID:31312904
The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji. PMID:31311598
Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid. PMID:31311507
Symbionts of the ciliate Euplotes: diversity, patterns and potential as models for bacteria-eukaryote endosymbioses. PMID:31311477
Early Feeding Regime of Waste Milk, Milk, and Milk Replacer for Calves Has Different Effects on Rumen Fermentation and the Bacterial Community. PMID:31311119
Changes in cecal microbiota community of suckling piglets infected with porcine epidemic diarrhea virus. PMID:31310635
Molecular community profiling of the bacterial microbiota associated with denture-related stomatitis. PMID:31308427
Comparative genomics identifies potential virulence factors in Clostridium tertium and C. paraputrificum. PMID:31304854
Human gut microbiome changes during a 10 week Randomised Control Trial for micronutrient supplementation in children with attention deficit hyperactivity disorder. PMID:31300667
CO2 and carbonate as substrate for the activation of the microbial community in 180 m deep bedrock fracture fluid of Outokumpu Deep Drill Hole, Finland. PMID:31294193
A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction. PMID:31293616
The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency. PMID:31293524
Influence of a 3-month low-calorie Mediterranean diet compared to the vegetarian diet on human gut microbiota and SCFA: the CARDIVEG Study. PMID:31292752
Dietary quality and the colonic mucosa-associated gut microbiome in humans. PMID:31291462
Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome. PMID:31289321
Does the endometrial cavity have a molecular microbial signature? PMID:31289304
A method of processing nasopharyngeal swabs to enable multiple testing. PMID:31288247
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. PMID:31286860
Community analysis of gut microbiota in hornets, the largest eusocial wasps, Vespa mandarinia and V. simillima. PMID:31285515
Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. PMID:31285347
Identifying microRNAs and Their Editing Sites in Macaca mulatta. PMID:31284505
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions. PMID:31281883
Deep-Sourced Fluids From a Convergent Margin Host Distinct Subseafloor Microbial Communities That Change Upon Mud Flow Expulsion. PMID:31281306
Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions. PMID:31281301
Outbreaks of an Emerging Viral Disease Covary With Differences in the Composition of the Skin Microbiome of a Wild United Kingdom Amphibian. PMID:31281291
Development of quantitative PCR for the detection of Alkalilimnicola ehrlichii, Thioalkalivibrio sulfidiphilus and Thioalkalibacter halophilus in gas biodesulfurization processes. PMID:31278455
Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments. PMID:31278352
Diversity of tryptophan halogenases in sponges of the genus Aplysina. PMID:31276591
Genome-wide identification and comparative analysis of drought-related microRNAs in two maize inbred lines with contrasting drought tolerance by deep sequencing. PMID:31276526
Subgingival microbiome of experimental gingivitis: shifts associated with the use of chlorhexidine and N-acetyl cysteine mouthwashes. PMID:31275528
Effect of Single Dose of Antimicrobial Administration at Birth on Fecal Microbiota Development and Prevalence of Antimicrobial Resistance Genes in Piglets. PMID:31275295
A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms. PMID:31275291
Assessing interactions, predicting function, and increasing degradation potential of a PAH-degrading bacterial consortium by effect of an inoculant strain. PMID:31273663
Clustered Core- and Pan-Genome Content on Rhodobacteraceae Chromosomes. PMID:31273387
Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing. PMID:31273307
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert. PMID:31273300
Detectability of biosignatures in a low-biomass simulation of martian sediments. PMID:31273294
Changes in the composition and function of bacterial communities during vermicomposting may explain beneficial properties of vermicompost. PMID:31273255
The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile. PMID:31272480
The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica. PMID:31271524
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution. PMID:31269198
Microbial Composition of the Human Nasopharynx Varies According to Influenza Virus Type and Vaccination Status. PMID:31266874
Time Series Genome-Centric Analysis Unveils Bacterial Response to Operational Disturbance in Activated Sludge. PMID:31266798
Oil degradation potential of microbial communities in water and sediment of Baltic Sea coastal area. PMID:31265451
Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean. PMID:31264806
Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities. PMID:31263569
Cathelicidin- derived PR39 protects enterohemorrhagic Escherichia coli O157:H7 challenged mice by improving epithelial function and balancing the microbiota in the intestine. PMID:31263234
Facultative Anaerobes Shape Multispecies Biofilms Composed of Meat Processing Surface Bacteria and Escherichia coli O157:H7 or Salmonella enterica Serovar Typhimurium. PMID:31253683
Emphasis on the deep or shallow parts of the tree provides a new characterization of phylogenetic distances. PMID:31253178
Prevalence and proliferation of antibiotic resistance genes in the subtropical mangrove wetland ecosystem of South China Sea. PMID:31251470
Altered intestinal microbiota associated with colorectal cancer. PMID:31250341
DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies. PMID:31249384
Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential. PMID:31248378
Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream (Sparus aurata). PMID:31247994
ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (O. sativa). PMID:31245663
Feeding Pasteurized Waste Milk to Preweaned Dairy Calves Changes Fecal and Upper Respiratory Tract Microbiota. PMID:31245388
Characterization of Mucosa-Associated Microbiota in Matched Cancer and Non-neoplastic Mucosa From Patients With Colorectal Cancer. PMID:31244818
Branched Medium Chain Fatty Acids: Iso-Caproate Formation from Iso-Butyrate Broadens the Product Spectrum for Microbial Chain Elongation. PMID:31244077
Nonferrous metal (loid) s mediate bacterial diversity in an abandoned mine tailing impoundment. PMID:31240654
Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation. PMID:31239380
Changes in endophytic bacterial communities during different growth stages of cucumber (Cucumis sativus L.). PMID:31236765
The effects of perineal disinfection on infant's oral microflora after transvaginal examination during delivery. PMID:31234808
Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment. PMID:31231339
Diversity of tetracycline- and erythromycin-resistant bacteria in aerosols and manures from four types of animal farms in China. PMID:31230244
Sexually Dimorphic Influence of Neonatal Antibiotics on Bone. PMID:31228216
Pathogenic Autoreactive T and B Cells Cross-React with Mimotopes Expressed by a Common Human Gut Commensal to Trigger Autoimmunity. PMID:31227334
Influence of Socio-Economic and Psychosocial Profiles on the Human Breast Milk Bacteriome of South African Women. PMID:31226873
Archaea dominate oxic subseafloor communities over multimillion-year time scales. PMID:31223656
Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis. PMID:31221858
First description of bacterial and fungal communities in Colombian coffee beans fermentation analysed using Illumina-based amplicon sequencing. PMID:31217528
The DNRA-Denitrification Dichotomy Differentiates Nitrogen Transformation Pathways in Mountain Lake Benthic Habitats. PMID:31214153
Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria. PMID:31214143
Dehydrated Alfalfa and Fresh Grass Supply in Young Rabbits: Effect on Performance and Caecal Microbiota Biodiversity. PMID:31212702
Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients. PMID:31211815
SpinachBase: a central portal for spinach genomics. PMID:31211398
Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean. PMID:31208456
Metagenomic Insights into the Bacterial Functions of a Diesel-Degrading Consortium for the Rhizoremediation of Diesel-Polluted Soil. PMID:31207997
Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons. PMID:31206549
Characterization of the microbiota and volatile components of kocho, a traditional fermented food of Ethiopia. PMID:31206089
Improved phylogenomic sampling of free-living nematodes enhances resolution of higher-level nematode phylogeny. PMID:31195978
Gut microbial dataset of a foraging tribe from rural West Bengal - insights into unadulterated and transitional microbial abundance. PMID:31193982
Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type. PMID:31191470
A symbiotic balancing act: arbuscular mycorrhizal specificity and specialist fungus gnat pollination in the mycoheterotrophic genus Thismia (Thismiaceae). PMID:31189014
Gut microbiome analysis by post: Evaluation of the optimal method to collect stool samples from infants within a national cohort study. PMID:31188837
Taxonomy based performance metrics for evaluating taxonomic assignment methods. PMID:31185897
Heterogeneous development of methanogens and the correlation with bacteria in the rumen and cecum of sika deer (Cervus nippon) during early life suggest different ecology relevance. PMID:31185894
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. PMID:31182796
Dynamic construction of gut microbiota may influence allergic diseases of infants in Southwest China. PMID:31182034
Soil bacterial and fungal communities of six bahiagrass cultivars. PMID:31179193
Comparison of the microbiomes of two drinking water distribution systems-with and without residual chloramine disinfection. PMID:31174608
Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study. PMID:31174538
Different Secondary Metabolite Profiles of Phylogenetically almost Identical Streptomyces griseus Strains Originating from Geographically Remote Locations. PMID:31174336
Pyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus. PMID:31171859
Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring. PMID:31171857
Gut microbiome associated with chemotherapy-induced diarrhea from the CapeOX regimen as adjuvant chemotherapy in resected stage III colorectal cancer. PMID:31168325
Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota. PMID:31167657
Biocontrol of Root Diseases and Growth Promotion of the Tuberous Plant Aconitum carmichaelii Induced by Actinomycetes Are Related to Shifts in the Rhizosphere Microbiota. PMID:31165188
Distinct Bacterial Communities in Wet and Dry Seasons During a Seasonal Water Level Fluctuation in the Largest Freshwater Lake (Poyang Lake) in China. PMID:31164883
Heterochronic faecal transplantation boosts gut germinal centres in aged mice. PMID:31164642
Antibody Treatment against Angiopoietin-Like 4 Reduces Pulmonary Edema and Injury in Secondary Pneumococcal Pneumonia. PMID:31164474
Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques. PMID:31164469
Antibiotic Exposure Has Sex-Dependent Effects on the Gut Microbiota and Metabolism of Short-Chain Fatty Acids and Amino Acids in Mice. PMID:31164448
Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure. PMID:31160673
Understanding microbial community dynamics to improve optimal microbiome selection. PMID:31159875
Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model. PMID:31159860
The Biodiversity and Geochemistry of Cryoconite Holes in Queen Maud Land, East Antarctica. PMID:31159414
Microbial Community Structure in the Sediments and Its Relation to Environmental Factors in Eutrophicated Sancha Lake. PMID:31159184
Evaluating the Effect of QIIME Balanced Default Parameters on Metataxonomic Analysis Workflows With a Mock Community. PMID:31156593
The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps. PMID:31156590
Role of Polysaccharides in Diatom Thalassiosira pseudonana and its Associated Bacteria in Hydrocarbon Presence. PMID:31152126
Predominance of Anaerobic, Spore-Forming Bacteria in Metabolically Active Microbial Communities from Ancient Siberian Permafrost. PMID:31152014
Exploring the effects of COLOSTRONONI on the mammalian gut microbiota composition. PMID:31150516
Dietary supplementation of black soldier fly (Hermetica illucens) meal modulates gut microbiota, innate immune response and health status of marron (Cherax cainii, Austin 2002) fed poultry-by-product and fishmeal based diets. PMID:31149398
Continuous n-valerate formation from propionate and methanol in an anaerobic chain elongation open-culture bioreactor. PMID:31149028
c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma. PMID:31142587
Community Composition and Metabolic Potential of Endophytic Actinobacteria From Coastal Salt Marsh Plants in Jiangsu, China. PMID:31139174
Elucidating Viral Communities During a Phytoplankton Bloom on the West Antarctic Peninsula. PMID:31139164
The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse. PMID:31139160
Microbial Selection and Survival in Subseafloor Sediment. PMID:31139156
Comparison of Bacterial Populations in the Ceca of Swine at Two Different Stages and their Functional Annotations. PMID:31137556
The effects of chemical and organic fertilizer usage on rhizosphere soil in tea orchards. PMID:31136614
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples. PMID:31136592
Source Environments of the Microbiome in Perennially Ice-Covered Lake Untersee, Antarctica. PMID:31134036
Bacterial Community Diversity and Screening of Growth-Affecting Bacteria From Isochrysis galbana Following Antibiotic Treatment. PMID:31134030
Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits. PMID:31134019
Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars. PMID:31133990
Ultra-small microorganisms in the polyextreme conditions of the Dallol volcano, Northern Afar, Ethiopia. PMID:31133675
Freezing Tolerance of Thermophilic Bacterial Endospores in Marine Sediments. PMID:31130935
Microbiology and Nitrogen Cycle in the Benthic Sediments of a Glacial Oligotrophic Deep Andean Lake as Analog of Ancient Martian Lake-Beds. PMID:31130930
Evaluation of the Biogenic Amines and Microbial Contribution in Traditional Chinese Sausages. PMID:31130922
The cooling tower water microbiota: Seasonal dynamics and co-occurrence of bacterial and protist phylotypes. PMID:31128471
Unveiled feather microcosm: feather microbiota of passerine birds is closely associated with host species identity and bacteriocin-producing bacteria. PMID:31127178
Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. PMID:31127042
Phycosphere Microbial Succession Patterns and Assembly Mechanisms in a Marine Dinoflagellate Bloom. PMID:31126952
New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea. PMID:31126943
Hydrocarbon-Degrading Microbial Communities Are Site Specific, and Their Activity Is Limited by Synergies in Temperature and Nutrient Availability in Surface Ocean Waters. PMID:31126938
Evaluation of the effects of four media on human intestinal microbiota culture in vitro. PMID:31123874
Longitudinal 16S rRNA data derived from limb regenerative tissue samples of axolotl Ambystoma mexicanum. PMID:31123261
Evidence for fungi and gold redox interaction under Earth surface conditions. PMID:31123249
Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome. PMID:31122191
The microbiome profiling of fungivorous black tinder fungus beetle Bolitophagus reticulatus reveals the insight into bacterial communities associated with larvae and adults. PMID:31119076
Alterations of the Gut Microbiota Associated With Promoting Efficacy of Prednisone by Bromofuranone in MRL/lpr Mice. PMID:31118928
Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. PMID:31118923
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus. PMID:31114006
Competitive interaction with keystone taxa induced negative priming under biochar amendments. PMID:31109381
Associations of Gut Microbiota With Heat Stress-Induced Changes of Growth, Fat Deposition, Intestinal Morphology, and Antioxidant Capacity in Ducks. PMID:31105682
Impact of Warming on Greenhouse Gas Production and Microbial Diversity in Anoxic Peat From a Sphagnum-Dominated Bog (Grand Rapids, Minnesota, United States). PMID:31105668
Transcriptome analysis of activated sludge microbiomes reveals an unexpected role of minority nitrifiers in carbon metabolism. PMID:31098412
Bacterial succession and functional diversity during vermicomposting of the white grape marc Vitis vinifera v. Albariño. PMID:31097737
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. PMID:31097702
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing. PMID:31095620
Faecal microbiota shift during weaning transition in piglets and evaluation of AO blood types as shaping factor for the bacterial community profile. PMID:31095619
Malaria vector species in Amazonian Peru co-occur in larval habitats but have distinct larval microbial communities. PMID:31091236
Anaerobic Degradation of N-ε-Carboxymethyllysine, a Major Glycation End-Product, by Human Intestinal Bacteria. PMID:31091091
Dynamics of archaeal community in soil with application of composted tannery sludge. PMID:31089146
Global diversity and biogeography of bacterial communities in wastewater treatment plants. PMID:31086312
Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet. PMID:31086117
Swimming, gliding, and rolling toward the mainstream: cell biology of marine protists. PMID:31084566
Fecal microbiota dysbiosis in macaques and humans within a shared environment. PMID:31083685
The significance of microbiome in personalized medicine. PMID:31081530
On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre. PMID:31076426
Bacillus subtilis Strain DSM 29784 Modulates the Cecal Microbiome, Concentration of Short-Chain Fatty Acids, and Apparent Retention of Dietary Components in Shaver White Chickens during Grower, Developer, and Laying Phases. PMID:31076425
Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis. PMID:31073898
Deianiraea, an extracellular bacterium associated with the ciliate Paramecium, suggests an alternative scenario for the evolution of Rickettsiales. PMID:31073215
Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa. PMID:31073213
Infection and nuclear interaction in mammalian cells by 'Candidatus Berkiella cookevillensis', a novel bacterium isolated from amoebae. PMID:31072343
Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat. PMID:31068923
Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean. PMID:31068921
Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis. PMID:31068577
Fecal Microbiome, Metabolites, and Stem Cell Transplant Outcomes: A Single-Center Pilot Study. PMID:31065565
Development of a Blocking Primer to Inhibit the PCR Amplification of the 18S rDNA Sequences of Litopenaeus vannamei and Its Efficacy in Crassostrea hongkongensis. PMID:31065252
Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. PMID:31065037
Variability in snake skin microbial assemblages across spatial scales and disease states. PMID:31065028
Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice. PMID:31062653
On resolving ambiguities in microbial community analysis of partial nitritation anammox reactors. PMID:31061389
What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. PMID:31058158
Is It First the Egg or the Shrimp? - Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development. PMID:31057515
Bacterial Community Succession, Transmigration, and Differential Gene Transcription in a Controlled Vertebrate Decomposition Model. PMID:31057499
Diversity and Succession of Microbiota during Fermentation of the Traditional Indian Food Idli. PMID:31053581
Microbiota and Chemical Compounds in Fermented Pinelliae Rhizoma (Banxiaqu) from Different Areas in the Sichuan Province, China. PMID:31050256
Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps. PMID:31049708
A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis. PMID:31042762
Isolation and Characterization of Live Yeast Cells from Ancient Vessels as a Tool in Bio-Archaeology. PMID:31040238
Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities. PMID:31034478
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots. PMID:31032840
Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies. PMID:31031919
Archaeal Sources of Intact Membrane Lipid Biomarkers in the Oxygen Deficient Zone of the Eastern Tropical South Pacific. PMID:31031734
High-Throughput Sequencing Reveals the Gut Microbiome of the Bactrian Camel in Different Ages. PMID:31030270
Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan. PMID:31030239
Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination. PMID:31027515
Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. PMID:31026580
Bacterial community composition and diversity of two different forms of an organic residue of bioenergy crop. PMID:31024771
Gender-Specific Associations Between Saliva Microbiota and Body Size. PMID:31024514
Enrichment and Characterisation of a Mixed-Source Ethanologenic Community Degrading the Organic Fraction of Municipal Solid Waste Under Minimal Environmental Control. PMID:31024500
A Risky Business? Habitat and Social Behavior Impact Skin and Gut Microbiomes in Caribbean Cleaning Gobies. PMID:31024495
Influence of Urbanization on Epiphytic Bacterial Communities of the Platanus × hispanica Tree Leaves in a Biennial Study. PMID:31024477
Microbial Diversity and Connectivity in Deep-Sea Sediments of the South Atlantic Polar Front. PMID:31024475
Pressure-Retaining Sampler and High-Pressure Systems to Study Deep-Sea Microbes Under in situ Conditions. PMID:31024462
Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure. PMID:31022199
Direct Lung Sampling Indicates That Established Pathogens Dominate Early Infections in Children with Cystic Fibrosis. PMID:31018133
Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One-Month Old Breastfed Infants. PMID:31017343
Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean. PMID:31015799
Habitat-dependent composition of bacterial and fungal communities in biological soil crusts from Oman. PMID:31015576
The Plastisphere - Uncovering tightly attached plastic "specific" microorganisms. PMID:31013334
Bacterial and Fungal Endophytic Microbiomes of Salicornia europaea. PMID:31003988
Colitis-Induced Th17 Cells Increase the Risk for Severe Subsequent Clostridium difficile Infection. PMID:31003940
The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions. PMID:31001232
Harmful Effect of Rheinheimera sp. EpRS3 (Gammaproteobacteria) Against the Protist Euplotes aediculatus (Ciliophora, Spirotrichea): Insights Into the Ecological Role of Antimicrobial Compounds From Environmental Bacterial Strains. PMID:31001206
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments. PMID:31000700
Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb. PMID:30999850
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. PMID:30997504
Exploring the microbiota and metabolites of traditional rice beer varieties of Assam and their functionalities. PMID:30997311
The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus. PMID:30997155
Uncovering the hidden marine sponge microbiome by applying a multi-primer approach. PMID:30996336
Exploring the emerging role of the microbiome in cancer immunotherapy. PMID:30995949
Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process. PMID:30995941
Experimental Evidence that Stochasticity Contributes to Bacterial Composition and Functioning in a Decomposer Community. PMID:30992354
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. PMID:30992083
Effects of a phytogenic, alone and associated with potassium diformate, on tilapia growth, immunity, gut microbiome and resistance against francisellosis. PMID:30988331
Usability of rectal swabs for microbiome sampling in a cohort study of hematological and oncological patients. PMID:30986251
A Salinity Threshold Separating Fungal Communities in the Baltic Sea. PMID:30984159
"Candidatus Colwellia aromaticivorans" sp. nov., "Candidatus Halocyntiibacter alkanivorans" sp. nov., and "Candidatus Ulvibacter alkanivorans" sp. nov. Genome Sequences. PMID:30975799
Antibiotic-resistant bacteria on personal devices in hospital intensive care units: Molecular approaches to quantifying and describing changes in the bacterial community of personal mobile devices. PMID:30973128
Host-Microbiome Synergistic Control on Sphingolipid Metabolism by Mechanotransduction in Model Arthritis. PMID:30970641
Microbial eukaryotes in the suboxic chemosynthetic ecosystem of Movile Cave, Romania. PMID:30969022
Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota. PMID:30967657
The sponge microbiome within the greater coral reef microbial metacommunity. PMID:30967538
Longitudinal changes in the gut microbiome of infants on total parenteral nutrition. PMID:30965357
Transcriptome analysis provides insights into the regulation of metabolic processes during postharvest cold storage of loquat (Eriobotrya japonica) fruit. PMID:30962941
Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple (Malus × domestica). PMID:30962933
Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota. PMID:30962486
Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes. PMID:30961590
Comparative analysis and characterization of the gut microbiota of four farmed snakes from southern China. PMID:30956901
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. PMID:30955503
Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments. PMID:30952929
The Eukaryotic Life on Microplastics in Brackish Ecosystems. PMID:30949147
16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil. PMID:30944883
Immunomodulatory nanogels overcome restricted immunity in a murine model of gut microbiome-mediated metabolic syndrome. PMID:30944865
Comparison of the fecal microbiota of two free-ranging Chinese subspecies of the leopard (Panthera pardus) using high-throughput sequencing. PMID:30944781
Associated bacteria of Botryococcus braunii (Chlorophyta). PMID:30944776
Biodegradation of thiocyanate by a native groundwater microbial consortium. PMID:30941266
Hepatic glycogen storage diseases are associated to microbial dysbiosis. PMID:30939160
Feeding modes shape the acquisition and structure of the initial gut microbiota in newborn lambs. PMID:30938032
Microbial Population Changes in Decaying Ascophyllum nodosum Result in Macroalgal-Polysaccharide-Degrading Bacteria with Potential Applicability in Enzyme-Assisted Extraction Technologies. PMID:30934874
The Effects of Unfermented and Fermented Cow and Sheep Milk on the Gut Microbiota. PMID:30930871
Rare Plankton Subcommunities Are Far More Affected by DNA Extraction Kits Than Abundant Plankton. PMID:30930870
Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches. PMID:30930856
Spatial analysis of a hydrocarbon waste-remediating landfarm demonstrates influence of management practices on bacterial and fungal community structure. PMID:30927344
Identification of Nitrogen-Fixing Bradyrhizobium Associated With Roots of Field-Grown Sorghum by Metagenome and Proteome Analyses. PMID:30915047
Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered From Deep Hydrocarbon-Rich Shale. PMID:30915042
An integrated microbiological and electrochemical approach to determine distributions of Fe metabolism in acid mine drainage-induced "iron mound" sediments. PMID:30913215
Identification of genetic relationships and subspecies signatures in Xylella fastidiosa. PMID:30909861
Using a soil bacterial species balance index to estimate potato crop productivity. PMID:30901358
Differences in Systemic IgA Reactivity and Circulating Th Subsets in Healthy Volunteers With Specific Microbiota Enterotypes. PMID:30899257
Altered Gut Microbiota in Chinese Children With Autism Spectrum Disorders. PMID:30895172
Metabolic phenotypes and the gut microbiota in response to dietary resistant starch type 2 in normal-weight subjects: a randomized crossover trial. PMID:30894560
Benefits of a Bacillus probiotic to larval fish survival and transport stress resistance. PMID:30894554
Colonization of the human gut by bovine bacteria present in Parmesan cheese. PMID:30894548
Metagenomic Characterization of Bacterial Communities on Ready-to-Eat Vegetables and Effects of Household Washing on their Diversity and Composition. PMID:30893890
Procyanidin-Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro. PMID:30893845
Microbial Ecology of the Western Gull (Larus occidentalis). PMID:30891612
Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat. PMID:30891022
Circadian disruption and divergent microbiota acquisition under extended photoperiod regimens in chicken. PMID:30886778
Identification of Austwickia chelonae as cause of cutaneous granuloma in endangered crocodile lizards using metataxonomics. PMID:30886772
Forfeiting the priority effect: turnover defines biofilm community succession. PMID:30886318
Pyrite formation from FeS and H2S is mediated through microbial redox activity. PMID:30886102
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli. PMID:30885897
Michigan cohorts to determine associations of maternal pre-pregnancy body mass index with pregnancy and infant gastrointestinal microbial communities: Late pregnancy and early infancy. PMID:30883572
Enhanced Anaerobic Biodegradation of Benzoate Under Sulfate-Reducing Conditions With Conductive Iron-Oxides in Sediment of Pearl River Estuary. PMID:30881355
Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae. PMID:30877285
Spatial Heterogeneity of Vibrio spp. in Sediments of Chinese Marginal Seas. PMID:30877118
Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling. PMID:30875926
Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome. PMID:30875864
The Toxic Effect of Herbicidal Ionic Liquids on Biogas-Producing Microbial Community. PMID:30875750
Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon. PMID:30871224
Molecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin. PMID:30870419
Differential composition of gut microbiota among healthy volunteers, morbidly obese patients and post-bariatric surgery patients. PMID:30867711
Metatranscriptomic exploration of microbial functioning in clouds. PMID:30867542
Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation. PMID:30865693
High-throughput sequence analysis of bacterial communities in commercial biofertiliser products marketed in South Africa: an independent snapshot quality assessment. PMID:30863692
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework. PMID:30863673
Metagenomic Approach to Characterizing Disease Epidemiology in a Disease-Endemic Environment in Northern Thailand. PMID:30863381
A congruent topology for deep gastropod relationships. PMID:30862305
Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments. PMID:30858573
Improving the ecological relevance of aquatic bacterial communities in biodegradability screening assessments. PMID:30857116
Microbial community structure and microbial networks correspond to nutrient gradients within coastal wetlands of the Laurentian Great Lakes. PMID:30855669
Effects of probiotics on chemotherapy in patients with lung cancer. PMID:30854059
Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area. PMID:30853948
Potential for Microbially Mediated Natural Attenuation of Diluted Bitumen on the Coast of British Columbia (Canada). PMID:30850431
Microbial community composition in alpine lake sediments from the Hengduan Mountains. PMID:30848090
Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses. PMID:30846981
Intensity of Nosema ceranae infection is associated with specific honey bee gut bacteria and weakly associated with gut microbiome structure. PMID:30846803
Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems. PMID:30846683
Intestinal Serum amyloid A suppresses systemic neutrophil activation and bactericidal activity in response to microbiota colonization. PMID:30845179
Lactobacillus gasseri APC 678 Reduces Shedding of the Pathogen Clostridium difficile in a Murine Model. PMID:30842760
Antitumor Anthraquinones from an Easter Island Sea Anemone: Animal or Bacterial Origin? PMID:30841562
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy. PMID:30839943
Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions in Wild Fish. PMID:30837993
Microbial communities in hummingbird feeders are distinct from floral nectar and influenced by bird visitation. PMID:30836877
Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling. PMID:30834331
Anaerobic Degradation of Sulfated Polysaccharides by Two Novel Kiritimatiellales Strains Isolated From Black Sea Sediment. PMID:30833937
Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue. PMID:30832576
Interleukin-33 Promotes REG3γ Expression in Intestinal Epithelial Cells and Regulates Gut Microbiota. PMID:30831322
Characterizing the bacterial community across the gastrointestinal tract of goats: Composition and potential function. PMID:30829000
Patterns of community assembly in the developing chicken microbiome reveal rapid primary succession. PMID:30828985
Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach. PMID:30828325
Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community. PMID:30828319
Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance. PMID:30824451
Farm Stage, Bird Age, and Body Site Dominantly Affect the Quantity, Taxonomic Composition, and Dynamics of Respiratory and Gut Microbiota of Commercial Layer Chickens. PMID:30824436
metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data. PMID:30821316
Influence of Crohn's disease related polymorphisms in innate immune function on ileal microbiome. PMID:30818349
Identification and Characterization of a Dominant Sulfolane-Degrading Rhodoferax sp. via Stable Isotope Probing Combined with Metagenomics. PMID:30816276
Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils. PMID:30813951
Classifying the Unclassified: A Phage Classification Method. PMID:30813498
Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria. PMID:30810441
Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes. PMID:30808697
Effects of a polysaccharide-rich extract derived from Irish-sourced Laminaria digitata on the composition and metabolic activity of the human gut microbiota using an in vitro colonic model. PMID:30805695
Chlamydia pecorum Associated With an Outbreak of Infectious Keratoconjunctivitis in Semi-domesticated Reindeer in Sweden. PMID:30805351
Soil Bacterial Communities From the Chilean Andean Highlands: Taxonomic Composition and Culturability. PMID:30805333
Diverse microbial communities hosted by the model carnivorous pitcher plant Sarracenia purpurea: analysis of both bacterial and eukaryotic composition across distinct host plant populations. PMID:30805246
Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae. PMID:30802246
Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform. PMID:30801027
Contrasting bacterial community structure in artificial pit mud-starter cultures of different qualities: a complex biological mixture for Chinese strong-flavor Baijiu production. PMID:30800600
Compartmentalization of Immune Response and Microbial Translocation in Decompensated Cirrhosis. PMID:30800122
A 'culture' shift: Application of molecular techniques for diagnosing polymicrobial infections. PMID:30797092
Intestinibaculum porci gen. nov., sp. nov., a new member of the family Erysipelotrichaceae isolated from the small intestine of a swine. PMID:30796749
In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota. PMID:30795808
Little cigars and cigarillos harbor diverse bacterial communities that differ between the tobacco and the wrapper. PMID:30794551
Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater. PMID:30792705
The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life. PMID:30792412
A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease. PMID:30787368
Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles. PMID:30784601
Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O. PMID:30783213
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. PMID:30782206
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. PMID:30782112
Inter- and Intra-Specific Transcriptional and Phenotypic Responses of Pseudo-nitzschia under Different Nutrient Conditions. PMID:30778535
Associations of prenatal exposure to polybrominated diphenyl ethers and polychlorinated biphenyls with long-term gut microbiome structure: a pilot study. PMID:30778401
Comparison of Microbial Communities in the Sediments and Water Columns of Frozen Cryoconite Holes in the McMurdo Dry Valleys, Antarctica. PMID:30778338
The NLRP3 inflammasome mediates DSS-induced intestinal inflammation in Nod2 knockout mice. PMID:30774010
Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino. PMID:30770764
Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California. PMID:30763377
Changes in rhizosphere bacterial communities during remediation of heavy metal-accumulating plants around the Xikuangshan mine in southern China. PMID:30760787
Methane Emission, Rumen Fermentation, and Microbial Community Response to a Nitrooxy Compound in Low-Quality Forage Fed Hu Sheep. PMID:30756141
Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. PMID:30755506
The intestinal environment as an evolutionary adaptation to mouthbrooding in the Astatotilapia burtoni cichlid. PMID:30753545
Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples. PMID:30747258
Arctic marine fungi: biomass, functional genes, and putative ecological roles. PMID:30745572
Dynamics of Hydrology and Anaerobic Hydrocarbon Degrader Communities in A Tar-Oil Contaminated Aquifer. PMID:30744114
Spatial distribution of prokaryotic communities in hypersaline soils. PMID:30741985
Cultivation and characterization of the bacterial assemblage of epsomic Basque Lake, BC. PMID:30737709
The discovery of Lake Hephaestus, the youngest athalassohaline deep-sea formation on Earth. PMID:30737448
Metabarcoding reveals that rhizospheric microbiota of Quercus pyrenaica is composed by a relatively small number of bacterial taxa highly abundant. PMID:30737434
Detection of Natural Products and Their Producers in Ocean Sediments. PMID:30737349
Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia's Northern Oceanic Ecoregions. PMID:30728821
Modulation of Metabolome and Bacterial Community in Whole Crop Corn Silage by Inoculating Homofermentative Lactobacillus plantarum and Heterofermentative Lactobacillus buchneri. PMID:30728817
The gut microbiota is largely independent of host genetics in regulating fat deposition in chickens. PMID:30728470
Comparison of Subtyping Approaches and the Underlying Drivers of Microbial Signatures for Chronic Rhinosinusitis. PMID:30728283
Kelpie: generating full-length 'amplicons' from whole-metagenome datasets. PMID:30723610
Different Munc18 proteins mediate baseline and stimulated airway mucin secretion. PMID:30721150
Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment. PMID:30718896
Diversity and environmental distribution of the cosmopolitan endosymbiont "Candidatus Megaira". PMID:30718604
Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level. PMID:30718562
The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant Enterobacteriaceae after traveling to tropical regions. PMID:30714464
Coupled changes of bacterial community and function in the gut of mud crab (Scylla Paramamosain) in response to Baimang disease. PMID:30712137
Trait-based community assembly and succession of the infant gut microbiome. PMID:30710083
Use of a Fluorescent Analog of Glucose (2-NBDG) To Identify Uncultured Rumen Bacteria That Take Up Glucose. PMID:30709823
The Water Hyacinth Microbiome: Link Between Carbon Turnover and Nutrient Cycling. PMID:30706113
Multi-Method Characterization of the Human Circulating Microbiome. PMID:30705670
Marine biofilms constitute a bank of hidden microbial diversity and functional potential. PMID:30705275
Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota. PMID:30701133
Isolation and characterization of Sphingomonadaceae from fouled membranes. PMID:30701078
The Gut Microbiota Is Associated with Clearance of Clostridium difficile Infection Independent of Adaptive Immunity. PMID:30700514
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches. PMID:30698687
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents. PMID:30696838
Long Term Diversity and Distribution of Non-photosynthetic Cyanobacteria in Peri-Alpine Lakes. PMID:30692982
Comparative Evaluation of Microbiota Engraftment Following Fecal Microbiota Transfer in Mice Models: Age, Kinetic and Microbial Status Matter. PMID:30692975
Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity. PMID:30691532
High-Throughput Sequence Analyses of Bacterial Communities and Multi-Mycotoxin Profiling During Processing of Different Formulations of Kunu, a Traditional Fermented Beverage. PMID:30687270
The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities. PMID:30687263
Picoeukaryotic Diversity And Activity in the Northwestern Pacific Ocean Based on rDNA and rRNA High-Throughput Sequencing. PMID:30687258
Among older adults, age-related changes in the stool microbiome differ by HIV-1 serostatus. PMID:30685386
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. PMID:30680888
Soil microbial restoration strategies for promoting climate-ready prairie ecosystems. PMID:30680826
Effects of urea plus nitrate pretreated rice straw and corn oil supplementation on fiber digestibility, nitrogen balance, rumen fermentation, microbiota and methane emissions in goats. PMID:30680191
Effects of the long-term storage of human fecal microbiota samples collected in RNAlater. PMID:30679604
Toll-Like Receptor-Dependent Immunomodulatory Activity of Pycnogenol®. PMID:30678156
Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves. PMID:30673718
Advanced Age Impairs Intestinal Antimicrobial Peptide Response and Worsens Fecal Microbiome Dysbiosis Following Burn Injury in Mice. PMID:30672882
Consistency in microbiomes in cultures of Alexandrium species isolated from brackish and marine waters. PMID:30672139
Effects of nickel and cobalt on methane production and methanogen abundance and diversity in paddy soil. PMID:30671309
AgNPs Change Microbial Community Structures of Wastewater. PMID:30671038
The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls. PMID:30669509
Snow algae communities in Antarctica: metabolic and taxonomic composition. PMID:30667072
A pilot study of fecal bile acid and microbiota profiles in inflammatory bowel disease and primary sclerosing cholangitis. PMID:30666146
Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model. PMID:30663928
Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico. PMID:30662434
Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome. PMID:30660184
Association between rhinovirus species and nasopharyngeal microbiota in infants with severe bronchiolitis. PMID:30654045
High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria. PMID:30653573
Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. PMID:30651609
Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing. PMID:30651402
Impact of inter- and intra-individual variation, sample storage and sampling fraction on human stool microbial community profiles. PMID:30648014
Plant microbiome-dependent immune enhancing action of Echinacea purpurea is enhanced by soil organic matter content. PMID:30644442
Fluoxetine-induced alteration of murine gut microbial community structure: evidence for a microbial endocrinology-based mechanism of action responsible for fluoxetine-induced side effects. PMID:30643701
Microbiota variations in Culex nigripalpus disease vector mosquito of West Nile virus and Saint Louis Encephalitis from different geographic origins. PMID:30643680
Effect of large magnetotactic bacteria with polyphosphate inclusions on the phosphate profile of the suboxic zone in the Black Sea. PMID:30643197
Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community. PMID:30635580
Diversity, Dynamics, and Distribution of Bdellovibrio and Like Organisms in Perialpine Lakes. PMID:30635378
Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae (sensu lato) during colonization in the laboratory. PMID:30635018
Endophytic bacterial communities in peels and pulp of five root vegetables. PMID:30633764
Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer. PMID:30631315
Microbiomes of the Enteropneust, Saccoglossus bromophenolosus, and Associated Marine Intertidal Sediments of Cod Cove, Maine. PMID:30631312
Temporal Bacterial Surveillance of Salmon Aquaculture Sites Indicates a Long Lasting Benthic Impact With Minimal Recovery. PMID:30631310
Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome. PMID:30631088
Clay beads as artificial trapping matrices for monitoring bacterial distribution among urban stormwater infiltration systems and their connected aquifers. PMID:30627788
"Candidatus Hafkinia simulans" gen. nov., sp. nov., a Novel Holospora-Like Bacterium from the Macronucleus of the Rare Brackish Water Ciliate Frontonia salmastra (Oligohymenophorea, Ciliophora): Multidisciplinary Characterization of the New Endosymbiont and Its Host. PMID:30627761
Microbial embryonal colonization during pipefish male pregnancy. PMID:30626884
Cross-Domain and Viral Interactions in the Microbiome. PMID:30626617
The effect of antimicrobial drug use on the composition of the genitourinary microbiota in an elderly population. PMID:30626324
Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica. PMID:30625192
Cophylogenetic analysis suggests cospeciation between the Scorpion Mycoplasma Clade symbionts and their hosts. PMID:30625167
Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. PMID:30623212
Staphylococcus aureus biofilm organization modulated by YycFG two-component regulatory pathway. PMID:30621792
Diversity of Bacterial Biota in Capnodis tenebrionis (Coleoptera: Buprestidae) Larvae. PMID:30621355
The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan. PMID:30619848
Specific Effect of Trace Metals on Marine Heterotrophic Microbial Activity and Diversity: Key Role of Iron and Zinc and Hydrocarbon-Degrading Bacteria. PMID:30619234
Microbiome Analysis Reveals the Presence of Bartonella spp. and Acinetobacter spp. in Deer Keds (Lipoptena cervi). PMID:30619179
Microbiota Changes in the Musk Gland of Male Forest Musk Deer During Musk Maturation. PMID:30619139
Comparison of Mothur and QIIME for the Analysis of Rumen Microbiota Composition Based on 16S rRNA Amplicon Sequences. PMID:30619117
Combination of microbiome analysis and serodiagnostics to assess the risk of pathogen transmission by ticks to humans and animals in central Germany. PMID:30616666
A reverse-transcription/RNase H based protocol for depletion of mosquito ribosomal RNA facilitates viral intrahost evolution analysis, transcriptomics and pathogen discovery. PMID:30616207
Canine endometrial and vaginal microbiomes reveal distinct and complex ecosystems. PMID:30615657
Fecal source tracking based on fecal coliform concentration and bacterial community structure in the Bong stream, Korea. PMID:30612367
Vertical Distribution of Bathyarchaeotal Communities in Mangrove Wetlands Suggests Distinct Niche Preference of Bathyarchaeota Subgroup 6. PMID:30612184
Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column. PMID:30610232
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. PMID:30610231
Evolutionary constraints on species diversity in marine bacterioplankton communities. PMID:30607025
Evaluation of 16S rRNA Databases for Taxonomic Assignments Using Mock Community. PMID:30602085
Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica. PMID:30600357
Genome of the candidate phylum Aminicenantes bacterium from a deep subsurface thermal aquifer revealed its fermentative saccharolytic lifestyle. PMID:30600356
Specific recruitment of soil bacteria and fungi decomposers following a biostimulant application increased crop residues mineralization. PMID:30596675
Does the antidiabetic drug metformin affect embryo development and the health of brown trout (Salmo trutta f. fario)? PMID:30595998
Mediterraneibacter butyricigenes sp. nov., a butyrate-producing bacterium isolated from human faeces. PMID:30594982
Gut microbiota dynamics and functionality in Reticulitermes grassei after a 7-day dietary shift and ciprofloxacin treatment. PMID:30590374
Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae. PMID:30586452
The efficacy of whole human genome capture on ancient dental calculus and dentin. PMID:30586168
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. PMID:30585382
Comparison of the gut microbiota of obese individuals from different geographic origins. PMID:30581574
Environmental DNA: A New Low-Cost Monitoring Tool for Pathogens in Salmonid Aquaculture. PMID:30581425
Competition among Nasal Bacteria Suggests a Role for Siderophore-Mediated Interactions in Shaping the Human Nasal Microbiota. PMID:30578265
Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon. PMID:30578263
The gut microbiome is required for full protection against acute arsenic toxicity in mouse models. PMID:30575732
Design and application of a novel two-amplicon approach for defining eukaryotic microbiota. PMID:30572961
Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem. PMID:30571782
Occurrence and Fate of Ultramicrobacteria in a Full-Scale Drinking Water Treatment Plant. PMID:30568635
Minimal Influence of Extracellular DNA on Molecular Surveys of Marine Sedimentary Communities. PMID:30564217
Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea. PMID:30559729
Diversity of Iron Oxidizers in Groundwater-Fed Rapid Sand Filters: Evidence of Fe(II)-Dependent Growth by Curvibacter and Undibacterium spp. PMID:30559723
Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. PMID:30559406
Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. PMID:30559359
Microbial community composition and diversity in the Indian Ocean deep sea REY-rich muds. PMID:30557300
Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals. PMID:30555706
Expression of a Recombinant Lentinula edodes Xylanase by Pichia pastoris and Its Effects on Ruminal Fermentation and Microbial Community in in vitro Incubation of Agricultural Straws. PMID:30555451
Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios. PMID:30555447
Echinococcus granulosus Infection Results in an Increase in Eisenbergiella and Parabacteroides Genera in the Gut of Mice. PMID:30555437
Insular resting state functional connectivity is associated with gut microbiota diversity. PMID:30554441
Floral and Foliar Source Affect the Bee Nest Microbial Community. PMID:30552443
Towards Quantitative Microbiome Community Profiling Using Internal Standards. PMID:30552195
Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome. PMID:30551580
Actinobaculum massiliense Proteome Profiled in Polymicrobial Urethral Catheter Biofilms. PMID:30544882
The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. PMID:30542336
Differential gene expression between the vigorous and dwarf litchi cultivars based on RNA-Seq transcriptome analysis. PMID:30540829
In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing. PMID:30535155
Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria and Caulobacter spp. That Encode Niche-Specific Biosynthetic Gene Clusters. PMID:30534962
New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract. PMID:30534599
Using Core Genome Alignments To Assign Bacterial Species. PMID:30534598
High Microbial Diversity Despite Extremely Low Biomass in a Deep Karst Aquifer. PMID:30534116
Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions. PMID:30533298
The hindgut microbiota of praying mantids is highly variable and includes both prey-associated and host-specific microbes. PMID:30533025
Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System. PMID:30532746
Co-existence of multiple bacterivorous clevelandellid ciliate species in hindgut of wood-feeding cockroaches in light of their prokaryotic consortium. PMID:30532066
Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation. PMID:30531893
Chlortetracycline Enhances Tonsil Colonization and Fecal Shedding of Multidrug-Resistant Salmonella enterica Serovar Typhimurium DT104 without Major Alterations to the Porcine Tonsillar and Intestinal Microbiota. PMID:30530706
Maelstrom Represses Canonical Polymerase II Transcription within Bi-directional piRNA Clusters in Drosophila melanogaster. PMID:30527661
A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements. PMID:30524406
Mechanisms Underlying Microbial-Mediated Changes in Social Behavior in Mouse Models of Autism Spectrum Disorder. PMID:30522820
Particle-Attached and Free-Living Archaeal Communities in the Benthic Boundary Layer of the Mariana Trench. PMID:30519228
Taxonomic and functional heterogeneity of the gill microbiome in a symbiotic coastal mangrove lucinid species. PMID:30518817
GhNAC83 inhibits corm dormancy release by regulating ABA signaling and cytokinin biosynthesis in Gladiolus hybridus. PMID:30517656
Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity. PMID:30515752
Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities. PMID:30515138
Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea). PMID:30514872
miRTrace reveals the organismal origins of microRNA sequencing data. PMID:30514392
Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands. PMID:30510549
Treating wheat seeds with neonicotinoid insecticides does not harm the rhizosphere microbial community. PMID:30507964
Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease. PMID:30505315
Diazotrophs and N2-Fixation Associated With Particles in Coastal Estuarine Waters. PMID:30505296
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. PMID:30504906
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination. PMID:30504215
Bacterial Community Composition in the Sea Surface Microlayer Off the Peruvian Coast. PMID:30498480
Exploration of deep terrestrial subsurface microbiome in Late Cretaceous Deccan traps and underlying Archean basement, India. PMID:30498254
GLOSSary: the GLobal Ocean 16S subunit web accessible resource. PMID:30497362
Highly competitive fungi manipulate bacterial communities in decomposing beech wood (Fagus sylvatica). PMID:30496397
Rumen microbiome in dairy calves fed copper and grape-pomace dietary supplementations: Composition and predicted functional profile. PMID:30496201
Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants. PMID:30487786
Different Influences of Bacterial Communities on Fe (III) Reduction and Phosphorus Availability in Sediments of the Cyanobacteria- and Macrophyte-Dominated Zones. PMID:30487778
Low Concentration of Antibiotics Modulates Gut Microbiota at Different Levels in Pre-Weaning Dairy Calves. PMID:30486334
Roots and Panicles of the C4 Model Grasses Setaria viridis (L). and S. pumila Host Distinct Bacterial Assemblages With Core Taxa Conserved Across Host Genotypes and Sampling Sites. PMID:30483233
Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota. PMID:30483229
Responses of broiler chickens to Eimeria challenge when fed a nucleotide-rich yeast extract. PMID:30481335
Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection. PMID:30479342
Characterisation of the British honey bee metagenome. PMID:30478343
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform. PMID:30476081
Diversity and predictive metabolic pathways of the prokaryotic microbial community along a groundwater salinity gradient of the Pearl River Delta, China. PMID:30470770
Different laboratory populations similar bacterial profile? The case of Glossina palpalis gambiensis. PMID:30470196
A Bridge Too Far? An Integrative Framework Linking Classical Protist Taxonomy and Metabarcoding in Lower Termites. PMID:30467496
Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies. PMID:30466491
Population and Culture Age Influence the Microbiome Profiles of House Dust Mites. PMID:30465068
Virulent Epidemic Pneumonia in Sheep Caused by the Human Pathogen Acinetobacter baumannii. PMID:30459734
Biofilm Microbiome (Re)Growth Dynamics in Drinking Water Distribution Systems Are Impacted by Chlorine Concentration. PMID:30459730
Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test. PMID:30459725
The structure and function of the global citrus rhizosphere microbiome. PMID:30459421
Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere. PMID:30459191
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms. PMID:30458701
Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome. PMID:30455975
Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death. PMID:30451358
Periodic and Spatial Spreading of Alkanes and Alcanivorax Bacteria in Deep Waters of the Mariana Trench. PMID:30446553
Pressure and temperature effects on deep-sea hydrocarbon-degrading microbial communities in subarctic sediments. PMID:30444300
Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems. PMID:30443603
Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp. PMID:30443242
Selective colonization ability of human fecal microbes in different mouse gut environments. PMID:30442907
Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells. PMID:30429354
Construction and Evaluation of a Korean Native Microbial Consortium for the Bioremediation of Diesel Fuel-Contaminated Soil in Korea. PMID:30425703
Two Populations of Mites (Tyrophagus putrescentiae) Differ in Response to Feeding on Feces-Containing Diets. PMID:30425700
Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice. PMID:30424806
Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial. PMID:30424728
Microbiome and its relation to gestational diabetes. PMID:30421135
The Effect of Captivity on the Dynamics of Active Bacterial Communities Differs Between Two Deep-Sea Coral Species. PMID:30420844
Dynamic linear models guide design and analysis of microbiota studies within artificial human guts. PMID:30419949
Fecal bacterial microbiota of Canadian commercial mink (Neovison vison): Yearly, life stage, and seasonal comparisons. PMID:30419047
Experimental Testing of Dispersal Limitation in Soil Bacterial Communities with a Propagule Addition Approach. PMID:30417222
Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge. PMID:30417110
Transcriptionally Active Lung Microbiome and Its Association with Bacterial Biomass and Host Inflammatory Status. PMID:30417108
Metabolic adaptation in the human gut microbiota during pregnancy and the first year of life. PMID:30415891
Divergent short-chain fatty acid production and succession of colonic microbiota arise in fermentation of variously-sized wheat bran fractions. PMID:30413754
Effects of organic matter and low oxygen on the mycobenthos in a coastal lagoon. PMID:30411473
Methylococcaceae are the dominant active aerobic methanotrophs in a Chinese tidal marsh. PMID:30411293
Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321, an endophyte microorganism from Vitis vinifera with biocontrol potential. PMID:30410642
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products. PMID:30409220
Evaluating gut microbiota profiles from archived fecal samples. PMID:30409123
Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains. PMID:30405664
FUT2 Variants Confer Susceptibility to Familial Otitis Media. PMID:30401457
Orally administered gold nanoparticles protect against colitis by attenuating Toll-like receptor 4- and reactive oxygen/nitrogen species-mediated inflammatory responses but could induce gut dysbiosis in mice. PMID:30384844
Heterogeneity of Microbial Communities on Deep-Sea Ferromanganese Crusts in the Takuyo-Daigo Seamount. PMID:30381615
Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection. PMID:30381486
Transmission strategies in a chemosynthetic symbiosis: detection and quantification of symbionts in host tissues and their environment. PMID:30381385
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. PMID:30376898
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. PMID:30376889
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. PMID:30371820
Detection of Clavibacter michiganensis subsp. michiganensis Assisted by Micro-Raman Spectroscopy under Laboratory Conditions. PMID:30369848
Bacterioplankton Metacommunity Processes across Thermal Gradients: Weaker Species Sorting but Stronger Niche Segregation in Summer than in Winter in a Subtropical Bay. PMID:30367007
Effects of water decontamination methods and bedding material on the gut microbiota. PMID:30359379
Habitat-specific variation in gut microbial communities and pathogen prevalence in bumblebee queens (Bombus terrestris). PMID:30359366
Opportunistic bacteria confer the ability to ferment prebiotic starch in the adult cystic fibrosis gut. PMID:30359203
High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations. PMID:30358140
A Cohort Study of the Milk Microbiota of Healthy and Inflamed Bovine Mammary Glands From Dryoff Through 150 Days in Milk. PMID:30356776
Unicellular Eukaryotic Community Response to Temperature and Salinity Variation in Mesocosm Experiments. PMID:30356732
Effect of dietary fiber content on nutrient digestibility and fecal microbiota composition in growing-finishing pigs. PMID:30356293
Temporal development of the gut microbiome in early childhood from the TEDDY study. PMID:30356187
Gene synthesis allows biologists to source genes from farther away in the tree of life. PMID:30356044
Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis. PMID:30355800
Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing. PMID:30355340
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes. PMID:30352611
16S Metagenomic Comparison of Plasmodium falciparum-Infected and Noninfected Anopheles gambiae and Anopheles funestus Microbiota from Senegal. PMID:30350766
Diversity of macaque microbiota compared to the human counterparts. PMID:30349024
Altitudinal variation of the gut microbiota in wild house mice. PMID:30346069
Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry. PMID:30344514
Comamonadaceae OTU as a Remnant of an Ancient Microbial Community in Sulfidic Waters. PMID:30341500
Limited congruence exhibited across microbial, meiofaunal and macrofaunal benthic assemblages in a heterogeneous coastal environment. PMID:30341362
Characterizing forensically important insect and microbial community colonization patterns in buried remains. PMID:30341329
16S rRNA amplicon sequencing reveals a polymicrobial nature of complicated claw horn disruption lesions and interdigital phlegmon in dairy cattle. PMID:30341326
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. PMID:30340631
Competitive lottery-based assembly of selected clades in the human gut microbiome. PMID:30340536
Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China. PMID:30336790
Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing. PMID:30335814
Uncovering vector, parasite, blood meal and microbiome patterns from mixed-DNA specimens of the Chagas disease vector Triatoma dimidiata. PMID:30335763
Oral Administration of Porphyromonas gingivalis Alters the Gut Microbiome and Serum Metabolome. PMID:30333180
Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products. PMID:30333179
Daylight exposure modulates bacterial communities associated with household dust. PMID:30333051
Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants. PMID:30326954
Proinflammatory Sulfur-Reducing Bacteria Are More Abundant in Colonic Biopsies of Patients with Microscopic Colitis Compared to Healthy Controls. PMID:30324555
Effects of wine-cap Stropharia cultivation on soil nutrients and bacterial communities in forestlands of northern China. PMID:30324022
Precise Fecal Microbiome of the Herbivorous Tibetan Antelope Inhabiting High-Altitude Alpine Plateau. PMID:30323800
Tong-Xie-Yao-Fang Regulates 5-HT Level in Diarrhea Predominant Irritable Bowel Syndrome Through Gut Microbiota Modulation. PMID:30323765
Long-term succession in a coal seam microbiome during in situ biostimulation of coalbed-methane generation. PMID:30323265
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). PMID:30323263
Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. PMID:30321383
Bacteriophages Synergize with the Gut Microbial Community To Combat Salmonella. PMID:30320220
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing. PMID:30320215
Effects of a Superabsorbent Resin with Boron on Bacterial Diversity of Peat Substrate and Maize Straw. PMID:30320136
Insight Into the Pico- and Nano-Phytoplankton Communities in the Deepest Biosphere, the Mariana Trench. PMID:30319587
Characterization of the bacterial community composition in water of drinking water production and distribution systems in Flanders, Belgium. PMID:30318762
Prokaryotic Diversity and Distribution in Different Habitats of an Alpine Rock Glacier-Pond System. PMID:30317429
Community profiling of the urinary microbiota: considerations for low-biomass samples. PMID:30315209
Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota. PMID:30315206
acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal. PMID:30315080
Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds. PMID:30314333
Short-term effect of Eucalyptus plantations on soil microbial communities and soil-atmosphere methane and nitrous oxide exchange. PMID:30310127
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. PMID:30309375
EIF1AX and RAS Mutations Cooperate to Drive Thyroid Tumorigenesis through ATF4 and c-MYC. PMID:30305285
Benefits of procyanidins on gut microbiota in Bama minipigs and implications in replacing antibiotics. PMID:30304891
Exploring biogeographic patterns of bacterioplankton communities across global estuaries. PMID:30303297
A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes. PMID:30301852
Carious status and supragingival plaque microbiota in hemodialysis patients. PMID:30300382
Quinoa whole grain diet compromises the changes of gut microbiota and colonic colitis induced by dextran Sulfate sodium in C57BL/6 mice. PMID:30297695
A Nematode of the Mid-Atlantic Ridge Hydrothermal Vents Harbors a Possible Symbiotic Relationship. PMID:30294317
Desiccation- and Saline-Tolerant Bacteria and Archaea in Kalahari Pan Sediments. PMID:30294305
Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles. PMID:30291328
Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress. PMID:30291120
Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut. PMID:30287885
Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium. PMID:30287860
Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing. PMID:30286722
Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China. PMID:30284602
Development of the Tonsil Microbiome in Pigs and Effects of Stress on the Microbiome. PMID:30283792
Alterations of the Gut Microbiome Associated With the Treatment of Hyperuricaemia in Male Rats. PMID:30283432
Characterizing the Human Mycobiota: A Comparison of Small Subunit rRNA, ITS1, ITS2, and Large Subunit rRNA Genomic Targets. PMID:30283425
Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers. PMID:30283418
Scrophularia striata Extract Supports Rumen Fermentation and Improves Microbial Diversity in vitro Compared to Monensin. PMID:30283414
Identification and Characterization of Orientia chuto in Trombiculid Chigger Mites Collected from Wild Rodents in Kenya. PMID:30282787
Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype. PMID:30282032
A combined lipidomic and 16S rRNA gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column. PMID:30281902
High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia. PMID:30280033
Viable cyanobacteria in the deep continental subsurface. PMID:30275328
Implementing Morpholino-Based Nucleic Acid Sensing on a Portable Surface Plasmon Resonance Instrument for Future Application in Environmental Monitoring. PMID:30274157
A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities. PMID:30273610
Sizing Up the Uncultured Microbial Majority. PMID:30273419
Direct Utilization of Organic Nitrogen by Phytoplankton and Its Role in Nitrogen Cycling Within the Southern California Bight. PMID:30271389
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene. PMID:30268091
Association of metformin administration with gut microbiome dysbiosis in healthy volunteers. PMID:30261008
Preliminary analysis of New Zealand scampi (Metanephrops challengeri) diet using metabarcoding. PMID:30258728
Fecal microbiota profile in a group of myasthenia gravis patients. PMID:30258104
Widespread Antibiotic, Biocide, and Metal Resistance in Microbial Communities Inhabiting a Municipal Waste Environment and Anthropogenically Impacted River. PMID:30258036
BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis. PMID:30256983
Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils. PMID:30254616
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing. PMID:30252901
Glucomannan Hydrolysate Promotes Gut Proliferative Homeostasis and Extends Life Span in Drosophila melanogaster. PMID:30252027
Bifidobacterium pseudocatenulatum CECT 7765 supplementation improves inflammatory status in insulin-resistant obese children. PMID:30251018
Microbiome Interaction Networks and Community Structure From Laboratory-Reared and Field-Collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus Mosquito Vectors. PMID:30250462
Comparative assessment of autochthonous bacterial and fungal communities and microbial biomarkers of polluted agricultural soils of the Terra dei Fuochi. PMID:30250138
Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages. PMID:30249184
Investigation of Detection Limits and the Influence of DNA Extraction and Primer Choice on the Observed Microbial Communities in Drinking Water Samples Using 16S rRNA Gene Amplicon Sequencing. PMID:30245681
Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater. PMID:30245678
Severe bronchiolitis profiles and risk of recurrent wheeze by age 3 years. PMID:30240701
Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions. PMID:30239713
Protists Within Corals: The Hidden Diversity. PMID:30233528
Active Crossfire Between Cyanobacteria and Cyanophages in Phototrophic Mat Communities Within Hot Springs. PMID:30233525
Single-Cell Genomics Reveals a Diverse Metabolic Potential of Uncultivated Desulfatiglans-Related Deltaproteobacteria Widely Distributed in Marine Sediment. PMID:30233524
The human gut pan-microbiome presents a compositional core formed by discrete phylogenetic units. PMID:30232462
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. PMID:30231921
Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 °N. PMID:30228379
Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer. PMID:30228361
Ceftriaxone Administration Disrupts Intestinal Homeostasis, Mediating Noninflammatory Proliferation and Dissemination of Commensal Enterococci. PMID:30224553
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis. PMID:30223889
Diet: Cause or Consequence of the Microbial Profile of Cholelithiasis Disease? PMID:30223526
Effects of the particle of ground alfalfa hay on the growth performance, methane production and archaeal populations of rabbits. PMID:30222733
Global Networks of Symbiodinium-Bacteria Within the Coral Holobiont. PMID:30218130
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice. PMID:30218046
Fucosylated oligosaccharides in mother's milk alleviate the effects of caesarean birth on infant gut microbiota. PMID:30214024
Bacterial community composition in the salivary glands of triatomines (Hemiptera: Reduviidae). PMID:30212460
Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench. PMID:30210485
The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish. PMID:30210475
Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F). PMID:30210473
Phosphorus and Nitrogen Drive the Seasonal Dynamics of Bacterial Communities in Pinus Forest Rhizospheric Soil of the Qinling Mountains. PMID:30210463
GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach. PMID:30208838
Characterization of bacterial and microbial eukaryotic communities associated with an ephemeral hypoxia event in Taihu Lake, a shallow eutrophic Chinese lake. PMID:30206827
Gut Bacterial Communities in Geographically Distant Populations of Farmed Sea Bream (Sparus aurata) and Sea Bass (Dicentrarchus labrax). PMID:30200504
Microbiome Diversity in Cotton Rhizosphere Under Normal and Drought Conditions. PMID:30196314
Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms. PMID:30194100
Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild. PMID:30191255
Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. PMID:30187987
Compositional and predicted functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing. PMID:30186698
Rhizobacterial communities of five co-occurring desert halophytes. PMID:30186688
Pseudomonas-Specific NGS Assay Provides Insight Into Abundance and Dynamics of Pseudomonas Species Including P. aeruginosa in a Cooling Tower. PMID:30186269
Unveiling the Multilocus Sequence Typing (MLST) Schemes and Core Genome Phylogenies for Genotyping Chlamydia trachomatis. PMID:30186244
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution. PMID:30185512
Gut microbiota-mediated protection against influenza virus subtype H9N2 in chickens is associated with modulation of the innate responses. PMID:30181578
Profiling of the Microbiome Associated With Nitrogen Removal During Vermifiltration of Wastewater From a Commercial Dairy. PMID:30177929
Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera. PMID:30177919
Microbiota dysbiosis and its pathophysiological significance in bowel obstruction. PMID:30177854
Metal Transformation by a Novel Pelosinus Isolate From a Subsurface Environment. PMID:30174652
Detecting eukaryotic microbiota with single-cell sensitivity in human tissue. PMID:30172254
Activity and Identification of Methanotrophic Bacteria in Arable and No-Tillage Soils from Lublin Region (Poland). PMID:30171270
Methods for automatic reference trees and multilevel phylogenetic placement. PMID:30169747
A potential central role of Thaumarchaeota in N-Cycling in a semi-arid environment, Fort Stanton Cave, Snowy River passage, New Mexico, USA. PMID:30165514
Exploring the Spatial-Temporal Microbiota of Compound Stomachs in a Pre-weaned Goat Model. PMID:30158908
Microbiome composition within a sympatric species complex of intertidal isopods (Jaera albifrons). PMID:30157257
Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data. PMID:30155371
The relationship between phylogenetic classification, virulence and antibiotic resistance of extraintestinal pathogenic Escherichia coli in İzmir province, Turkey. PMID:30155366
Investigating diversity of pathogenic microbes in commercial bait trade water. PMID:30155365
In situ development of a methanotrophic microbiome in deep-sea sediments. PMID:30154496
The microbiota of hematophagous ectoparasites collected from migratory birds. PMID:30148833
Reduced-Particle-Size Wheat Bran Is Efficiently Colonized by a Lactic Acid-Producing Community and Reduces Levels of Enterobacteriaceae in the Cecal Microbiota of Broilers. PMID:30143505
Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. PMID:30143055
Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation. PMID:30143032
Probiotic supplements prevented oxonic acid-induced hyperuricemia and renal damage. PMID:30142173
Diversity and Dynamics of "Candidatus Endobugula" and Other Symbiotic Bacteria in Chinese Populations of the Bryozoan, Bugula neritina. PMID:30141128
Co-occurrence of Anaerobes in Human Chronic Wounds. PMID:30141127
Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila. PMID:30140258
Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing. PMID:30138447
Phylogenetic Clustering of Genes Reveals Shared Evolutionary Trajectories and Putative Gene Functions. PMID:30137329
Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures. PMID:30136922
The microbiota in the intestinal and respiratory tracts of naked mole-rats revealed by high-throughput sequencing. PMID:30134830
Determinants of the Nasal Microbiome: Pilot Study of Effects of Intranasal Medication Use. PMID:30128169
Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa. PMID:30126990
Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes. PMID:30123204
Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies. PMID:30121081
Effect of industrial trans-fatty acids-enriched diet on gut microbiota of C57BL/6 mice. PMID:30120538
Assessment of urinary 3-indoxyl sulfate as a marker for gut microbiota diversity and abundance of Clostridiales. PMID:30118620
Resistance and Recovery of Methane-Oxidizing Communities Depends on Stress Regime and History; A Microcosm Study. PMID:30108568
The Hidden World of Rickettsiales Symbionts: "Candidatus Spectririckettsia obscura," a Novel Bacterium Found in Brazilian and Indian Paramecium caudatum. PMID:30105505
Neutrophilic Asthma Is Associated with Increased Airway Bacterial Burden and Disordered Community Composition. PMID:30105264
PLGA-encapsulated CpG ODN and Campylobacter jejuni lysate modulate cecal microbiota composition in broiler chickens experimentally challenged with C. jejuni. PMID:30104702
Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics. PMID:30104688
A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi. PMID:30102395
Aging impairs protective host defenses against Clostridioides (Clostridium) difficile infection in mice by suppressing neutrophil and IL-22 mediated immunity. PMID:30099125
A Microbial Signature of Psychological Distress in Irritable Bowel Syndrome. PMID:30095672
Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral-associated microbes. PMID:30094953
Tissue Microbiome of Norway Spruce Affected by Heterobasidion-Induced Wood Decay. PMID:30094615
Tucumã Oil Shifted Ruminal Fermentation, Reducing Methane Production and Altering the Microbiome but Decreased Substrate Digestibility Within a RUSITEC Fed a Mixed Hay - Concentrate Diet. PMID:30093888
The impacts of delivery mode on infant's oral microflora. PMID:30093722
Chronic d-serine supplementation impairs insulin secretion. PMID:30093356
In Situ Diazotroph Population Dynamics Under Different Resource Ratios in the North Pacific Subtropical Gyre. PMID:30090092
Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as Amendment. PMID:30087670
Interactions Between Clostridioides difficile and Fecal Microbiota in in Vitro Batch Model: Growth, Sporulation, and Microbiota Changes. PMID:30087660
Defective IgA response to atypical intestinal commensals in IL-21 receptor deficiency reshapes immune cell homeostasis and mucosal immunity. PMID:30087442
Dysbiosis and early mortality in zebrafish larvae exposed to subclinical concentrations of streptomycin. PMID:30085054
Analysis of the bacterial community from high alkaline (pH > 13) drainage water at a brown mud disposal site near Žiar nad Hronom (Banská Bystrica region, Slovakia) using 454 pyrosequencing. PMID:30084086
Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing. PMID:30082688
Variations of Bacterial Community Composition and Functions in an Estuary Reservoir during Spring and Summer Alternation. PMID:30082592
Multiscale investigation of a symbiotic microalgal-integrated fixed film activated sludge (MAIFAS) process for nutrient removal and photo-oxygenation. PMID:30077169
Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs. PMID:30072970
The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism. PMID:30071904
Wild Bee Pollen Usage and Microbial Communities Co-vary Across Landscapes. PMID:30069710
Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata (Scleractinia) and Gorgonia ventalina (Alcyonacea). PMID:30069039
Short-chain fatty acids: microbial metabolites that alleviate stress-induced brain-gut axis alterations. PMID:30066368
Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current. PMID:30065704
Quorum-Quenching Bacteria Isolated From Red Sea Sediments Reduce Biofilm Formation by Pseudomonas aeruginosa. PMID:30065702
Active microbiome structure and its association with environmental factors and viruses at different aquatic sites of a high-altitude wetland. PMID:30062777
Genome-wide comparative analysis in Solanaceous species reveals evolution of microRNAs targeting defense genes in Capsicum spp. PMID:30060137
Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment. PMID:30058291
Gut microbiota is associated with obesity and cardiometabolic disease in a population in the midst of Westernization. PMID:30054529
iac Gene Expression in the Indole-3-Acetic Acid-Degrading Soil Bacterium Enterobacter soli LF7. PMID:30054366
Diversity of Bacterial Microbiota of Coastal Halophyte Limonium sinense and Amelioration of Salinity Stress Damage by Symbiotic Plant Growth-Promoting Actinobacterium Glutamicibacter halophytocola KLBMP 5180. PMID:30054358
Bacterial microbiota protect an invasive bark beetle from a pine defensive compound. PMID:30053907
Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment. PMID:30051650
Effect of Freeze-Thaw on a Midtemperate Soil Bacterial Community and the Correlation Network of Its Members. PMID:30050943
Genomic profiling of four cultivated Candidatus Nitrotoga spp. predicts broad metabolic potential and environmental distribution. PMID:30050164
Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes. PMID:30050163
Induction and Amelioration of Methotrexate-Induced Gastrointestinal Toxicity are Related to Immune Response and Gut Microbiota. PMID:30049384
A low FODMAP diet is associated with changes in the microbiota and reduction in breath hydrogen but not colonic volume in healthy subjects. PMID:30048547
Minor taxa in human skin microbiome contribute to the personal identification. PMID:30044822
Consensus assessment of the contamination level of publicly available cyanobacterial genomes. PMID:30044797
A Comparative Study on the Faecal Bacterial Community and Potential Zoonotic Bacteria of Muskoxen (Ovibos moschatus) in Northeast Greenland, Northwest Greenland and Norway. PMID:30044373
Trends in bacterial and fungal communities in ant nests observed with Terminal-Restriction Fragment Length Polymorphism (T-RFLP) and Next Generation Sequencing (NGS) techniques-validity and compatibility in ecological studies. PMID:30042898
Intestinal Microbiota Disruption Reduces Regulatory T Cells and Increases Respiratory Viral Infection Mortality Through Increased IFNγ Production. PMID:30042764
High Throughput Sequencing and Network Analysis Disentangle the Microbial Communities of Ticks and Hosts Within and Between Ecosystems. PMID:30038903
Analysis of Fish Commonly Sold in Local Supermarkets Reveals the Presence of Pathogenic and Multidrug-Resistant Bacterial Communities. PMID:30038503
Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity. PMID:30038421
Microbial biogeography of 925 geothermal springs in New Zealand. PMID:30038374
Murine colitis reveals a disease-associated bacteriophage community. PMID:30038310
Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production. PMID:30034526
The nasopharyngeal microbiota in patients with viral respiratory tract infections is enriched in bacterial pathogens. PMID:30033505
Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota. PMID:30030457
Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota. PMID:30029674
Bacterial diversity of bat guano from Cabalyorisa Cave, Mabini, Pangasinan, Philippines: A first report on the metagenome of Philippine bat guano. PMID:30024917
Spring and Late Summer Phytoplankton Biomass Impact on the Coastal Sediment Microbial Community Structure. PMID:30019110
Humic Substances Alter Ammonia Production and the Microbial Populations Within a RUSITEC Fed a Mixed Hay - Concentrate Diet. PMID:30013529
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome. PMID:30013164
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. PMID:30013066
Lab to Field Assessment of the Ecotoxicological Impact of Chlorpyrifos, Isoproturon, or Tebuconazole on the Diversity and Composition of the Soil Bacterial Community. PMID:30008705
Bacterial Y RNAs: Gates, Tethers, and tRNA Mimics. PMID:30006996
Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities? PMID:30006971
Microbial Community Dynamics and Assembly Follow Trajectories of an Early-Spring Diatom Bloom in a Semienclosed Bay. PMID:30006403
Mediation Analysis as a Means of Identifying Dietary Components That Differentially Affect the Fecal Microbiota of Infants Weaned by Modified Baby-Led and Traditional Approaches. PMID:30006390
Modulation of the honey bee queen microbiota: Effects of early social contact. PMID:30001407
Feasting on terrestrial organic matter: Dining in a dark lake changes microbial decomposition. PMID:29998600
Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function. PMID:29997589
Effects of dietary energy levels on rumen bacterial community composition in Holstein heifers under the same forage to concentrate ratio condition. PMID:29996759
De novo assembly of a transcriptome for the cricket Gryllus bimaculatus prothoracic ganglion: An invertebrate model for investigating adult central nervous system compensatory plasticity. PMID:29995882
The composition of the perinatal intestinal microbiota in cattle. PMID:29993024
Evaluation of dairy processing wastewater biotreatment in an IASBR system: Aeration rate impacts on performance and microbial ecology. PMID:29992097
Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits. PMID:29991752
Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia. PMID:29988640
Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA. PMID:29986118
Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers. PMID:29984314
Effect of spatial origin and hydrocarbon composition on bacterial consortia community structure and hydrocarbon biodegradation rates. PMID:29982504
Linking Uncultivated Microbial Populations and Benthic Carbon Turnover by Using Quantitative Stable Isotope Probing. PMID:29980553
Taxonomic and Functional Compositions Impacted by the Quality of Metatranscriptomic Assemblies. PMID:29973918
Gut microbial diversity in two insectivorous bats: Insights into the effect of different sampling sources. PMID:29971963
Association Between Gut Microbiota and Helicobacter pylori-Related Gastric Lesions in a High-Risk Population of Gastric Cancer. PMID:29971220
Whole-Cell MALDI-TOF MS Versus 16S rRNA Gene Analysis for Identification and Dereplication of Recurrent Bacterial Isolates. PMID:29971049
Comparison of Database Search Methods for the Detection of Legionella pneumophila in Water Samples Using Metagenomic Analysis. PMID:29971047
Specificities and Efficiencies of Primers Targeting Candidatus Phylum Saccharibacteria in Activated Sludge. PMID:29970836
A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria). PMID:29970154
Disruption of microbial community composition and identification of plant growth promoting microorganisms after exposure of soil to rapeseed-derived glucosinolates. PMID:29969500
Fern genomes elucidate land plant evolution and cyanobacterial symbioses. PMID:29967517
Molecular analysis of endotracheal tube biofilms and tracheal aspirates in the pediatric intensive care unit. PMID:29963643
Overlapping Community Compositions of Gut and Fecal Microbiomes in Lab-Reared and Field-Collected German Cockroaches. PMID:29959246
Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing. PMID:29954887
Changes in rhizosphere microbial communities in potted cucumber seedlings treated with syringic acid. PMID:29953531
5-Aminosalicylic Acid Alters the Gut Bacterial Microbiota in Patients With Ulcerative Colitis. PMID:29951050
Microbiomes of North American Triatominae: The Grounds for Chagas Disease Epidemiology. PMID:29951039
HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies. PMID:29950165
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples. PMID:29950008
Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples. PMID:29949574
Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies. PMID:29946357
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater. PMID:29942682
Genetic variability and ontogeny predict microbiome structure in a disease-challenged montane amphibian. PMID:29942072
Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics. PMID:29941875
Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales. PMID:29941576
Evaluation of the impact of dental prophylaxis on the oral microbiota of dogs. PMID:29940032
Optofluidic Single-Cell Genome Amplification of Sub-micron Bacteria in the Ocean Subsurface. PMID:29937754
Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling. PMID:29931252
A strong link between marine microbial community composition and function challenges the idea of functional redundancy. PMID:29925880
Dietary Supplementation with a Magnesium-Rich Marine Mineral Blend Enhances the Diversity of Gastrointestinal Microbiota. PMID:29925774
Fecal Bacteriome and Mycobiome in Bats with Diverse Diets in South China. PMID:29922970
Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada. PMID:29922252
Bacterial Diversity and Nitrogen Utilization Strategies in the Upper Layer of the Northwestern Pacific Ocean. PMID:29922238
Interpopulation Variation in the Atlantic Salmon Microbiome Reflects Environmental and Genetic Diversity. PMID:29915104
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. PMID:29912385
Visualization of Microbiota in Tick Guts by Whole-mount In Situ Hybridization. PMID:29912204
Suitability and setup of next-generation sequencing-based method for taxonomic characterization of aquatic microbial biofilm. PMID:29909524
Profiling the Urinary Microbiota in Male Patients With Bladder Cancer in China. PMID:29904624
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity. PMID:29904074
Marked Response in Microbial Community and Metabolism in the Ileum and Cecum of Suckling Piglets After Early Antibiotics Exposure. PMID:29899739
Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site. PMID:29899506
Spatial and Environmental Variation of the Human Hair Microbiota. PMID:29899411
Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications. PMID:29899005
Giardia Infection of the Small Intestine Induces Chronic Colitis in Genetically Susceptible Hosts. PMID:29898958
BioSankey: Visualization of Microbial Communities Over Time. PMID:29897884
Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. PMID:29896167
Soil pH Is the Primary Factor Correlating With Soil Microbiome in Karst Rocky Desertification Regions in the Wushan County, Chongqing, China. PMID:29896164
The canine gut microbiome is associated with higher risk of gastric dilatation-volvulus and high risk genetic variants of the immune system. PMID:29889838
Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges. PMID:29888140
Influence of the Chemical Form of Antimony on Soil Microbial Community Structure and Arsenite Oxidation Activity. PMID:29887548
Insights into the skin microbiome dynamics of leprosy patients during multi-drug therapy and in healthy individuals from Brazil. PMID:29884862
Novel prosthecate bacteria from the candidate phylum Acetothermia. PMID:29884828
Phylogenetic-scale disparities in the soil microbial diversity-ecosystem functioning relationship. PMID:29880911
Effects of straw return on bacterial communities in a wheat-maize rotation system in the North China Plain. PMID:29879153
MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database. PMID:29878054
The Airplane Cabin Microbiome. PMID:29876609
Insights into the bacterial symbiont diversity in spiders. PMID:29876068
Effects of Ice-Algal Aggregate Export on the Connectivity of Bacterial Communities in the Central Arctic Ocean. PMID:29875749
Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems. PMID:29875741
Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota. PMID:29874877
On the Use of Diversity Measures in Longitudinal Sequencing Studies of Microbial Communities. PMID:29872428
Characterization of Pustular Mats and Related Rivularia-Rich Laminations in Oncoids From the Laguna Negra Lake (Argentina). PMID:29872427
Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). PMID:29872424
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data. PMID:29868296
A Mosaic of Geothermal and Marine Features Shapes Microbial Community Structure on Deception Island Volcano, Antarctica. PMID:29867810
Development of a Custom MALDI-TOF MS Database for Species-Level Identification of Bacterial Isolates Collected From Spacecraft and Associated Surfaces. PMID:29867782
Disbiome database: linking the microbiome to disease. PMID:29866037
Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions. PMID:29864131
Alterations in the oral microbiome in HIV-infected participants after antiretroviral therapy administration are influenced by immune status. PMID:29851662
Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition. PMID:29850933
Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt. PMID:29849646
Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan. PMID:29844480
Combining amplicon sequencing and metabolomics in cirrhotic patients highlights distinctive microbiota features involved in bacterial translocation, systemic inflammation and hepatic encephalopathy. PMID:29844325
Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq. PMID:29843608
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy. PMID:29807988
Balantidium grimi n. sp. (Ciliophora, Litostomatea), a new species inhabiting the rectum of the frog Quasipaa spinosa from Lishui, China. PMID:29806591
Long-Term Administration of Conjugated Estrogen and Bazedoxifene Decreased Murine Fecal β-Glucuronidase Activity Without Impacting Overall Microbiome Community. PMID:29802368
Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo. PMID:29802288
High-Throughput rRNA Gene Sequencing Reveals High and Complex Bacterial Diversity Associated with Brazilian Coffee Bean Fermentation. PMID:29796001
Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates. PMID:29795295
Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community. PMID:29789586
Translation: The Universal Structural Core of Life. PMID:29788252
Diversity and community structure of marine microbes around the Benham Rise underwater plateau, northeastern Philippines. PMID:29785352
Effects of Fenbendazole-impregnated Feed and Topical Moxidectin during Quarantine on the Gut Microbiota of C57BL/6 Mice. PMID:29784074
Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov. PMID:29781801
Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures. PMID:29774017
Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice. PMID:29769431
Stable isotope probing of hypoxic toluene degradation at the Siklós aquifer reveals prominent role of Rhodocyclaceae. PMID:29767715
Pig Farmers' Homes Harbor More Diverse Airborne Bacterial Communities Than Pig Stables or Suburban Homes. PMID:29765370
Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon. PMID:29764387
Postnatal colonization with human "infant-type" Bifidobacterium species alters behavior of adult gnotobiotic mice. PMID:29763437
Small tropical islands with dense human population: differences in water quality of near-shore waters are associated with distinct bacterial communities. PMID:29761035
The influence of diet and environment on the gut microbial community of field crickets. PMID:29760910
Probiotics Strains Modulate Gut Microbiota and Lipid Metabolism in Mule Ducks. PMID:29755604
Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure. PMID:29755437
The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill. PMID:29755436
16S rRNA Gene Sequencing for Deciphering the Colorectal Cancer Gut Microbiome: Current Protocols and Workflows. PMID:29755427
Fecal microbiome of periparturient dairy cattle and associations with the onset of Salmonella shedding. PMID:29750790
High turnover of faecal microbiome from algal feedstock experimental manipulations in the Pacific oyster (Crassostrea gigas). PMID:29749083
Diversity of bacterial community during ensiling and subsequent exposure to air in whole-plant maize silage. PMID:29747496
Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel). PMID:29746519
Detection of Chlamydiaceae and Chlamydia-like organisms on the ocular surface of children and adults from a trachoma-endemic region. PMID:29743637
What Is the Role of Archaea in Plants? New Insights from the Vegetation of Alpine Bogs. PMID:29743201
Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations. PMID:29740420
Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type Salmonella enterica Serovar Typhi. PMID:29739901
Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study. PMID:29736335
Potential forensic biogeographic application of diatom colony consistency analysis employing pyrosequencing profiles of the 18S rDNA V7 region. PMID:29732463
The influence of oxygen and methane on nitrogen fixation in subarctic Sphagnum mosses. PMID:29730829
Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato. PMID:29729208
Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach. PMID:29728382
High quality draft genome sequences of Mycoplasma agassizii strains PS6T and 723 isolated from Gopherus tortoises with upper respiratory tract disease. PMID:29725499
Molecular detection of fungal pathogens in clinical specimens by 18S rDNA high-throughput screening in comparison to ITS PCR and culture. PMID:29725065
Feminizing Wolbachia influence microbiota composition in the terrestrial isopod Armadillidium vulgare. PMID:29725059
EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes. PMID:29724163
Rhizospheric microbial communities are driven by Panax ginseng at different growth stages and biocontrol bacteria alleviates replanting mortality. PMID:29719788
Effect of the natural arsenic gradient on the diversity and arsenic resistance of bacterial communities of the sediments of Camarones River (Atacama Desert, Chile). PMID:29715297
Marine-influenced microbial communities inhabit terrestrial hot springs on a remote island volcano. PMID:29713821
Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. PMID:29713790
Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria. PMID:29712903
Prokaryotic and eukaryotic community structure affected by the presence of an acid mine drainage from an abandoned gold mine. PMID:29705928
Predator and prey biodiversity relationship and its consequences on marine ecosystem functioning-interplay between nanoflagellates and bacterioplankton. PMID:29703955
Diversity, structure and sources of bacterial communities in earthworm cocoons. PMID:29700426
Single-cell metagenomics: challenges and applications. PMID:29696589
Rapid Formation of Microbe-Oil Aggregates and Changes in Community Composition in Coastal Surface Water Following Exposure to Oil and the Dispersant Corexit. PMID:29696005
Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment. PMID:29694379
Continuously Monocropped Jerusalem Artichoke Changed Soil Bacterial Community Composition and Ammonia-Oxidizing and Denitrifying Bacteria Abundances. PMID:29692769
High quality draft genome sequence of Mycoplasma testudineum strain BH29T, isolated from the respiratory tract of a desert tortoise. PMID:29682170
Bacterial Communities of Diatoms Display Strong Conservation Across Strains and Time. PMID:29681892
Bacterial Community in Water and Air of Two Sub-Alpine Lakes in Taiwan. PMID:29681561
The impact of storage buffer, DNA extraction method, and polymerase on microbial analysis. PMID:29674641
Metagenomic Insights Into the Microbial Community and Nutrient Cycling in the Western Subarctic Pacific Ocean. PMID:29670596
Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region. PMID:29670584
Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice. PMID:29670191
Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex. PMID:29669075
River Flow Impacts Bacterial and Archaeal Community Structure in Surface Sediments in the Northern Gulf of Mexico. PMID:29666882
Direct and Indirect Effects of Penguin Feces on Microbiomes in Antarctic Ornithogenic Soils. PMID:29666609
Life on the edge: active microbial communities in the Kryos MgCl2-brine basin at very low water activity. PMID:29666446
Exposure to concentrated ambient PM2.5 alters the composition of gut microbiota in a murine model. PMID:29665823
A comparison of methods used to unveil the genetic and metabolic pool in the built environment. PMID:29661230
Development of the tonsillar microbiome in pigs from newborn through weaning. PMID:29661149
Using pseudoalignment and base quality to accurately quantify microbial community composition. PMID:29659582
Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection. PMID:29654837
Comparative biogeography of the gut microbiome between Jinhua and Landrace pigs. PMID:29654314
Changes in the Rumen Epithelial Microbiota of Cattle and Host Gene Expression in Response to Alterations in Dietary Carbohydrate Composition. PMID:29654184
Reproducible protocols for metagenomic analysis of human faecal phageomes. PMID:29631623
Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run. PMID:29629423
A Retrospective Review of Microbiological Methods Applied in Studies Following the Deepwater Horizon Oil Spill. PMID:29628913
Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable. PMID:29619014
Constructing lightweight and flexible pipelines using Plugin-Based Microbiome Analysis (PluMA). PMID:29618009
Moss habitats distinctly affect their associated bacterial community structures as revealed by the high-throughput sequencing method. PMID:29605884
Thermophilic endospores associated with migrated thermogenic hydrocarbons in deep Gulf of Mexico marine sediments. PMID:29599524
Short-term dynamics and interactions of marine protist communities during the spring-summer transition. PMID:29599520
Investigation of the seasonal microbiome of Anopheles coluzzii mosquitoes in Mali. PMID:29596468
Diversity and Contributions to Nitrogen Cycling and Carbon Fixation of Soil Salinity Shaped Microbial Communities in Tarim Basin. PMID:29593680
Methane stimulates massive nitrogen loss from freshwater reservoirs in India. PMID:29593290
Oral Antibiotic Treatment of Mice Exacerbates the Disease Severity of Multiple Flavivirus Infections. PMID:29590614
Outlier detection in BLAST hits. PMID:29588650
Drinking water microbiome assembly induced by water stagnation. PMID:29588495
Hybridization capture reveals microbial diversity missed using current profiling methods. PMID:29587880
Assessment of microbiome changes after rumen transfaunation: implications on improving feed efficiency in beef cattle. PMID:29587855
Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore. PMID:29587830
Fecal microbiota in the female prairie vole (Microtus ochrogaster). PMID:29579049
Assessing soil bacterial community and dynamics by integrated high-throughput absolute abundance quantification. PMID:29576979
A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform. PMID:29575567
Impact of spatial organization on a novel auxotrophic interaction among soil microbes. PMID:29572468
HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort. PMID:29567959
Male spiders control offspring sex ratio through greater production of female-determining sperm. PMID:29563266
Careful use of 16S rRNA gene sequence similarity values for the identification of Mycobacterium species. PMID:29556405
Studying microbial functionality within the gut ecosystem by systems biology. PMID:29556373
Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. PMID:29556222
Comparison Between the Fecal Bacterial Microbiota of Healthy and Diarrheic Captive Musk Deer. PMID:29551996
The diversity of ice algal communities on the Greenland Ice Sheet as revealed by oligotyping. PMID:29547098
Seasonal Variation Influences on Intestinal Microbiota in Rats. PMID:29546587
The role of inflammation in temporal shifts in the inflammatory bowel disease mucosal microbiome. PMID:29543557
A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America. PMID:29540734
Changes in soil physicochemical properties and soil bacterial community in mulberry (Morus alba L.)/alfalfa (Medicago sativa L.) intercropping system. PMID:29536644
Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline-Alkaline Soils. PMID:29535703
High planktonic diversity in mountain lakes contains similar contributions of autotrophic, heterotrophic and parasitic eukaryotic life forms. PMID:29535368
Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn's Disease Patients. PMID:29535202
The Bacterial Population of Neutral Mine Drainage Water of Elizabeth's Shaft (Slovinky, Slovakia). PMID:29532150
Microbial metagenome of urinary tract infection. PMID:29531289
Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis. PMID:29531234
Comparisons of bacterial and archaeal communities in the rumen and a dual-flow continuous culture fermentation system using amplicon sequencing. PMID:29529208
Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton. PMID:29521439
Oropharyngeal Microbiota in Frail Older Patients Unaffected by Time in Hospital. PMID:29515974
Trichoderma-Inoculated Miscanthus Straw Can Replace Peat in Strawberry Cultivation, with Beneficial Effects on Disease Control. PMID:29515613
Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent. PMID:29514229
Metagenomic Analysis of a Biphenyl-Degrading Soil Bacterial Consortium Reveals the Metabolic Roles of Specific Populations. PMID:29497412
Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera. PMID:29497402
Arginine Metabolism Is Altered in Adults with A-β + Ketosis-Prone Diabetes. PMID:29490093
Long-Term Warming Shifts the Composition of Bacterial Communities in the Phyllosphere of Galium album in a Permanent Grassland Field-Experiment. PMID:29487575
Spatial Organization of the Gastrointestinal Microbiota in Urban Canada Geese. PMID:29487373
Genome-resolved metagenomics of sugarcane vinasse bacteria. PMID:29483941
Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota. PMID:29483910
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem. PMID:29482646
Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland. PMID:29479346
Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities. PMID:29476141
Core Sulphate-Reducing Microorganisms in Metal-Removing Semi-Passive Biochemical Reactors and the Co-Occurrence of Methanogens. PMID:29473875
Microbial Diversity and Mineralogical-Mechanical Properties of Calcitic Cave Speleothems in Natural and in Vitro Biomineralization Conditions. PMID:29472898
Microbial community composition along a 50 000-year lacustrine sediment sequence. PMID:29471361
Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia. PMID:29468803
Diversity of Rare and Abundant Prokaryotic Phylotypes in the Prony Hydrothermal Field and Comparison with Other Serpentinite-Hosted Ecosystems. PMID:29467733
Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan. PMID:29467725
Predatory flying squids are detritivores during their early planktonic life. PMID:29467371
Impact of Oral Fidaxomicin Administration on the Intestinal Microbiota and Susceptibility to Clostridium difficile Colonization in Mice. PMID:29463537
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. PMID:29462950
Long-Term Cultivation and Metagenomics Reveal Ecophysiology of Previously Uncultivated Thermophiles Involved in Biogeochemical Nitrogen Cycle. PMID:29459499
A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera. PMID:29458340
Common Hydraulic Fracturing Fluid Additives Alter the Structure and Function of Anaerobic Microbial Communities. PMID:29453259
Bacterial communities in mining soils and surrounding areas under regeneration process in a former ore mine. PMID:29452849
Composition and Activity of Microbial Communities along the Redox Gradient of an Alkaline, Hypersaline, Lake. PMID:29445359
RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data. PMID:29444661
The vertical distribution of prokaryotes in the surface sediment of Jiaolong cold seep at the northern South China Sea. PMID:29442249
CO2 leakage alters biogeochemical and ecological functions of submarine sands. PMID:29441359
Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats. PMID:29441234
Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population. PMID:29441076
Comparative genomic analysis of mollicutes with and without a chaperonin system. PMID:29438383
Gut Microbiome and Inflammation: A Study of Diabetic Inflammasome-Knockout Mice. PMID:29435463
Association of gut microbial communities with plasma lipopolysaccharide-binding protein (LBP) in premenopausal women. PMID:29434315
The Madness of Microbiome: Attempting To Find Consensus "Best Practice" for 16S Microbiome Studies. PMID:29427429
Effect of calcium salt of long-chain fatty acids and alfalfa supplementation on performance of Holstein bulls. PMID:29423026
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages. PMID:29416071
Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses. PMID:29410658
Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea. PMID:29410656
The Development of Microbiota and Metabolome in Small Intestine of Sika Deer (Cervus nippon) from Birth to Weaning. PMID:29410651
Diversity and metabolic potential of the microbiota associated with a soil arthropod. PMID:29410494
Linking Nitrogen Load to the Structure and Function of Wetland Soil and Rhizosphere Microbial Communities. PMID:29404427
Variation in Raw Milk Microbiota Throughout 12 Months and the Impact of Weather Conditions. PMID:29402950
A 5-year field study showed no apparent effect of the Bt transgenic 741 poplar on the arthropod community and soil bacterial diversity. PMID:29386632
Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies. PMID:29386622
Longitudinal microbiome analysis of single donor fecal microbiota transplantation in patients with recurrent Clostridium difficile infection and/or ulcerative colitis. PMID:29385143
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. PMID:29382948
Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems. PMID:29382896
Human Microbiome Acquisition and Bioinformatic Challenges in Metagenomic Studies. PMID:29382070
Effect of light wavelength on hot spring microbial mat biodiversity. PMID:29381713
Planktonic microbial profiling in water samples from a Brazilian Amazonian reservoir. PMID:29380948
Microbial Diversity of Hypersaline Sediments from Lake Lucero Playa in White Sands National Monument, New Mexico, USA. PMID:29380029
The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish. PMID:29379473
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. PMID:29379208
Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling. PMID:29373999
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. PMID:29371663
The Human Mucosal Mycobiome and Fungal Community Interactions. PMID:29371572
Fungal diversity in oil palm leaves showing symptoms of Fatal Yellowing disease. PMID:29370299
Association between duration of intravenous antibiotic administration and early-life microbiota development in late-preterm infants. PMID:29368074
Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities. PMID:29367879
Nonalcoholic fatty liver disease is associated with dysbiosis independent of body mass index and insulin resistance. PMID:29362454
The nasal microbiome mirrors and potentially shapes olfactory function. PMID:29358754
Anaerobic methanotrophic communities thrive in deep submarine permafrost. PMID:29358665
Utility of a portable desiccant system for preservation of fecal samples for downstream 16S rRNA amplicon sequencing. PMID:29355576
Time Course-Dependent Methanogenic Crude Oil Biodegradation: Dynamics of Fumarate Addition Metabolites, Biodegradative Genes, and Microbial Community Composition. PMID:29354103
16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones. PMID:29353409
Corallivory and the microbial debacle in two branching scleractinians. PMID:29339825
Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. PMID:29338764
Coral physiology and microbiome dynamics under combined warming and ocean acidification. PMID:29338021
Environmental Sequencing Fills the Gap Between Parasitic Haplosporidians and Free-living Giant Amoebae. PMID:29336517
Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients. PMID:29329346
Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan. PMID:29321767
Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field. PMID:29321763
Large-scale ocean connectivity and planktonic body size. PMID:29321528
On monospecific genera in prokaryotic taxonomy. PMID:29318203
A historical legacy of antibiotic utilization on bacterial seed banks in sediments. PMID:29312823
Functional Stability and Community Dynamics during Spring and Autumn Seasons Over 3 Years in Camargue Microbial Mats. PMID:29312277
Glyphosate Shapes a Dinoflagellate-Associated Bacterial Community While Supporting Algal Growth as Sole Phosphorus Source. PMID:29312222
Differential Ecological Specificity of Protist and Bacterial Microbiomes across a Set of Termite Species. PMID:29312218
Phylogenetic Structure and Metabolic Properties of Microbial Communities in Arsenic-Rich Waters of Geothermal Origin. PMID:29312179
Exploring the Cultivable Ectocarpus Microbiome. PMID:29312170
Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism. PMID:29312168
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome. PMID:29311644
Deepest and hottest hydrothermal activity in the Okinawa Trough: the Yokosuka site at Yaeyama Knoll. PMID:29308272
Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone. PMID:29305629
"Pomacytosis"-Semi-extracellular phagocytosis of cyanobacteria by the smallest marine algae. PMID:29304142
Profiling soil microbial communities with next-generation sequencing: the influence of DNA kit selection and technician technical expertise. PMID:29302394
Short-chain fatty acids regulate systemic bone mass and protect from pathological bone loss. PMID:29302038
The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis. PMID:29298732
Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality. PMID:29298729
The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna. PMID:29298680
16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing. PMID:29297318
The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes. PMID:29294181
Modulation of the diet and gastrointestinal microbiota normalizes systemic inflammation and β-cell chemokine expression associated with autoimmune diabetes susceptibility. PMID:29293587
Combined oral and topical antimicrobial therapy for male partners of women with bacterial vaginosis: Acceptability, tolerability and impact on the genital microbiota of couples - A pilot study. PMID:29293559
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias. PMID:29291348
Rates of gut microbiome divergence in mammals. PMID:29290090
Pretreatment with probiotic Bifico ameliorates colitis-associated cancer in mice: Transcriptome and gut flora profiling. PMID:29288512
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. PMID:29282519
Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth. PMID:29276172
Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur. PMID:29270165
Bacterial community structure and novel species of magnetotactic bacteria in sediments from a seamount in the Mariana volcanic arc. PMID:29269894
Temporal and Regional Variability in the Skin Microbiome of Humpback Whales along the Western Antarctic Peninsula. PMID:29269499
Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization. PMID:29267397
The importance of filamentous cyanobacteria in the development of oxygenic photogranules. PMID:29263358
Changes in bacterial and archaeal communities during the concentration of brine at the graduation towers in Ciechocinek spa (Poland). PMID:29260386
The Native Hawaiian Insect Microbiome Initiative: A Critical Perspective for Hawaiian Insect Evolution. PMID:29257089
Bacterial Diversity and Biogeochemistry of Two Marine Shallow-Water Hydrothermal Systems off Dominica (Lesser Antilles). PMID:29255454
Successful collection of stool samples for microbiome analyses from a large community-based population of elderly men. PMID:29250605
Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium". PMID:29247059
Frankia Diversity in Host Plant Root Nodules Is Independent of Abundance or Relative Diversity of Frankia Populations in Corresponding Rhizosphere Soils. PMID:29247058
Condensed Tannins Affect Bacterial and Fungal Microbiomes and Mycotoxin Production during Ensiling and upon Aerobic Exposure. PMID:29247054
Novel ITS1 Fungal Primers for Characterization of the Mycobiome. PMID:29242834
A Coxiella mutualist symbiont is essential to the development of Rhipicephalus microplus. PMID:29242567
Eukaryotic Microbiomes of Membrane-Attached Biofilms in Membrane Bioreactors Analyzed by High-Throughput Sequencing and Microscopic Observations. PMID:29237993
Dispersal limitation promotes the diversification of the mammalian gut microbiota. PMID:29229828
A New Niche for Anoxygenic Phototrophs as Endoliths. PMID:29222097
Use of a mixed culture strategy to isolate halophilic bacteria with antibacterial and cytotoxic activity from the Manaure solar saltern in Colombia. PMID:29216824
Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study. PMID:29211803
Atmospheric trace gases support primary production in Antarctic desert surface soil. PMID:29211716
Resting Stage of Plankton Diversity from Singapore Coastal Water: Implications for Harmful Algae Blooms and Coastal Management. PMID:29204675
Microbial life on a sand grain: from bulk sediment to single grains. PMID:29192905
Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production. PMID:29192904
Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake. PMID:29192335
Effects of Lactobacillus acidophilus on gut microbiota composition in broilers challenged with Clostridium perfringens. PMID:29190649
Profiling of Oral Microbiota in Early Childhood Caries Using Single-Molecule Real-Time Sequencing. PMID:29187843
Capturing Early Changes in the Marine Bacterial Community as a Result of Crude Oil Pollution in a Mesocosm Experiment. PMID:29187706
A Simple and Efficient RNA Extraction Method from Deep-Sea Hydrothermal Vent Chimney Structures. PMID:29187693
Ecogenomics and Taxonomy of Cyanobacteria Phylum. PMID:29184540
Bacterial alterations in salivary microbiota and their association in oral cancer. PMID:29184122
Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients. PMID:29180991
Stratification of Diversity and Activity of Methanogenic and Methanotrophic Microorganisms in a Nitrogen-Fertilized Italian Paddy Soil. PMID:29180985
Dietary energy drives the dynamic response of bovine rumen viral communities. PMID:29179741
The gut mycobiome of the Human Microbiome Project healthy cohort. PMID:29178920
Chromosome level assembly and secondary metabolite potential of the parasitic fungus Cordyceps militaris. PMID:29178836
Microbial Reduction of Fe(III) and SO42- and Associated Microbial Communities in the Alluvial Aquifer Groundwater and Sediments. PMID:29177753
Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion. PMID:29177117
High Trypanosoma spp. diversity is maintained by bats and triatomines in Espírito Santo state, Brazil. PMID:29176770
Geochemical Influence on Microbial Communities at CO2-Leakage Analog Sites. PMID:29170659
Species-specific signatures of the microbiome from Camponotus and Colobopsis ants across developmental stages. PMID:29166404
Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing. PMID:29163432
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches. PMID:29163426
MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage. PMID:29163399
Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession. PMID:29163397
Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. PMID:29163388
Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate. PMID:29163375
Copolymers enhance selective bacterial community colonization for potential root zone applications. PMID:29162884
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. PMID:29158776
Whole-Genome Characterization of Bacillus cereus Associated with Specific Disease Manifestations. PMID:29158433
Dietary protein sources differentially affect microbiota, mTOR activity and transcription of mTOR signaling pathways in the small intestine. PMID:29149221
Environmental influences on the skin microbiome of humans and cattle in rural Madagascar. PMID:29147568
Airway microbiota across age and disease spectrum in cystic fibrosis. PMID:29146601
Structural and functional differences in gut microbiome composition in patients undergoing haemodialysis or peritoneal dialysis. PMID:29142271
First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin. PMID:29138298
Gastric microbiome of Indian patients with Helicobacter pylori infection, and their interaction networks. PMID:29133866
Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals. PMID:29127421
Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica. PMID:29127335
Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities. PMID:29125596
Pancreatic cyst fluid harbors a unique microbiome. PMID:29122007
Diets Alter the Gut Microbiome of Crocodile Lizards. PMID:29118742
Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. PMID:29114014
Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea. PMID:29113091
Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus. PMID:29109973
New microbial resource: microbial diversity, function and dynamics in Chinese liquor starter. PMID:29109406
A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer. PMID:29099490
A comparative study of sequence- and structure-based features of small RNAs and other RNAs of bacteria. PMID:29099311
Brown Rot Syndrome and Changes in the Bacterial Сommunity of the Baikal Sponge Lubomirskia baicalensis. PMID:29098357
Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. PMID:29097493
Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants. PMID:29096601
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. PMID:29092005
Insight into cordycepin biosynthesis of Cordyceps militaris: Comparison between a liquid surface culture and a submerged culture through transcriptomic analysis. PMID:29091925
A communal catalogue reveals Earth's multiscale microbial diversity. PMID:29088705
Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter. PMID:29085339
Morphological and genetic factors shape the microbiome of a seabird species (Oceanodroma leucorhoa) more than environmental and social factors. PMID:29084611
Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. PMID:29084347
Generalist species drive microbial dispersion and evolution. PMID:29079803
Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds. PMID:29078310
Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China. PMID:29075237
Bacterial community of a spider, Marpiss magister (Salticidae). PMID:29071168
Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission. PMID:29070062
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. PMID:29069476
Microbial community differentiation between active and inactive sulfide chimneys of the Kolumbo submarine volcano, Hellenic Volcanic Arc. PMID:29067531
Nitrogen Loss from Pristine Carbonate-Rock Aquifers of the Hainich Critical Zone Exploratory (Germany) Is Primarily Driven by Chemolithoautotrophic Anammox Processes. PMID:29067012
Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents. PMID:29066755
Prokaryotic community profiling of local algae wastewaters using advanced 16S rRNA gene sequencing. PMID:29063392
Tide as Steering Factor in Structuring Archaeal and Bacterial Ammonia-Oxidizing Communities in Mangrove Forest Soils Dominated by Avicennia germinans and Rhizophora mangle. PMID:29063148
A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus. PMID:29062941
Microbial community diversity patterns are related to physical and chemical differences among temperate lakes near Beaver Island, MI. PMID:29062609
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance. PMID:29056339
Microbial activity influences electrical conductivity of biofilm anode. PMID:29055828
The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian. PMID:29054873
Estimating Population Turnover Rates by Relative Quantification Methods Reveals Microbial Dynamics in Marine Sediment. PMID:29054869
The taxonomic composition of the donor intestinal microbiota is a major factor influencing the efficacy of faecal microbiota transplantation in therapy refractory ulcerative colitis. PMID:29052237
Effects of inoculants Lactobacillus brevis and Lactobacillus parafarraginis on the fermentation characteristics and microbial communities of corn stover silage. PMID:29051616
High reactivity of deep biota under anthropogenic CO2 injection into basalt. PMID:29051484
Metagenome of the Microbial Community of Anammox Granules in a Nitritation/Anammox Wastewater Treatment System. PMID:29051250
Immune-modulatory genomic properties differentiate gut microbiota of infants with and without eczema. PMID:29049378
Impact of Age-Related Mitochondrial Dysfunction and Exercise on Intestinal Microbiota Composition. PMID:29045670
Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat. PMID:29045626
Impact of supplementation with a food-derived microbial community on obesity-associated inflammation and gut microbiota composition. PMID:29043005
Towards a balanced view of the bacterial tree of life. PMID:29041958
Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection. PMID:29039846
Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments. PMID:29039843
Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring. PMID:29034331
Adaptation of Methanogenic Inocula to Anaerobic Digestion of Maize Silage. PMID:29033919
A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies. PMID:29033905
Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP. PMID:29028411
Unbiased Taxonomic Annotation of Metagenomic Samples. PMID:29028181
Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters. PMID:29027996
Application of stable-isotope labelling techniques for the detection of active diazotrophs. PMID:29027346
Flooding Duration Affects the Structure of Terrestrial and Aquatic Microbial Eukaryotic Communities. PMID:29026984
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics. PMID:29021524
The sponge microbiome project. PMID:29020741
Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms. PMID:29020009
Bacteria alone establish the chemical basis of the wood-fall chemosynthetic ecosystem in the deep-sea. PMID:28984846
Can intestinal microbiota be associated with non-intestinal cancers? PMID:28983086
Identification of IL-40, a Novel B Cell-Associated Cytokine. PMID:28978694
Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing. PMID:28974259
Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc. PMID:28970817
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics. PMID:28969605
Evolution in fecal bacterial/viral composition in infants of two central African countries (Gabon and Republic of the Congo) during their first month of life. PMID:28968427
Bacterial community associated with worker honeybees (Apis mellifera) affected by European foulbrood. PMID:28966892
Diversity of cultivated aerobic poly-hydrolytic bacteria in saline alkaline soils. PMID:28966889
SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees. PMID:28964270
Ancient permafrost staphylococci carry antibiotic resistance genes. PMID:28959177
How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers. PMID:28955319
Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing. PMID:28955315
TDP-43 regulates cancer-associated microRNAs. PMID:28952053
Microbes and associated soluble and volatile chemicals on periodically wet household surfaces. PMID:28950891
Microbial megacities fueled by methane oxidation in a mineral spring cave. PMID:28949325
Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. PMID:28943998
Microbial Shifts in the Intestinal Microbiota of Salmonella Infected Chickens in Response to Enrofloxacin. PMID:28943868
From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean. PMID:28943866
Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters. PMID:28938908
Novel transcriptome resources for three scleractinian coral species from the Indo-Pacific. PMID:28938722
Strain Level Streptococcus Colonization Patterns during the First Year of Life. PMID:28932211
Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women. PMID:28931850
Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge. PMID:28931087
The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria. PMID:28928719
Methanogens predominate in natural corrosion protective layers on metal sheet piles. PMID:28928457
Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well. PMID:28925579
Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae. PMID:28919890
Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes. PMID:28915922
Isotopic effects of PCE induced by organohalide-respiring bacteria. PMID:28913587
Microbial diversity in the hypersaline Lake Meyghan, Iran. PMID:28912589
Host Genetic Control of the Oral Microbiome in Health and Disease. PMID:28910633
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome. PMID:28902868
Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems. PMID:28900257
Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton. PMID:28895945
Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients. PMID:28894183
The effect of different organic materials amendment on soil bacteria communities in barren sandy loam soil. PMID:28884297
Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean. PMID:28880951
Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes. PMID:28878981
PrePhyloPro: phylogenetic profile-based prediction of whole proteome linkages. PMID:28875072
DNA in a bottle-Rapid metabarcoding survey for early alerts of invasive species in ports. PMID:28873426
Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities. PMID:28865481
Monitoring of genetically modified Escherichia coli in laboratory wastewater. PMID:28864953
Ribosome signatures aid bacterial translation initiation site identification. PMID:28854918
Metagenomic mining pectinolytic microbes and enzymes from an apple pomace-adapted compost microbial community. PMID:28852421
Temporal Stability and Composition of the Ocular Surface Microbiome. PMID:28852195
Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses. PMID:28852182
Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors. PMID:28852064
Microbial communities with distinct denitrification potential in spruce and beech soils differing in nitrate leaching. PMID:28851897
Seasonal Analysis of Microbial Communities in Precipitation in the Greater Tokyo Area, Japan. PMID:28848519
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women. PMID:28847941
The impact of immigration on microbial community composition in full-scale anaerobic digesters. PMID:28839166
Metagenomic analysis reveals a green sulfur bacterium as a potential coral symbiont. PMID:28839161
Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations. PMID:28836729
Microbial diversity in solar greenhouse soils in Round-Bohai Bay-Region, China: The influence of cultivation year and environmental condition. PMID:28831706
unitas: the universal tool for annotation of small RNAs. PMID:28830358
Metagenomic investigation of gastrointestinal microbiome in cattle. PMID:28830126
A pivotal role for ocean eddies in the distribution of microbial communities across the Antarctic Circumpolar Current. PMID:28827834
Metabolic Reconstruction and Modeling Microbial Electrosynthesis. PMID:28827682
Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAs. PMID:28825667
Intestinal Bacterial Communities of Trypanosome-Infected and Uninfected Glossina palpalis palpalis from Three Human African Trypanomiasis Foci in Cameroon. PMID:28824591
Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp. PMID:28824589
Mesozooplankton Graze on Cyanobacteria in the Amazon River Plume and Western Tropical North Atlantic. PMID:28824569
Microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant Helicobacter-related taxon. PMID:28821872
The effect of storage at ambient temperature on the feline fecal microbiota. PMID:28821259
Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function. PMID:28819457
Comparative Genome Analysis of Rathayibacter tritici NCPPB 1953 with Rathayibacter toxicus Strains Can Facilitate Studies on Mechanisms of Nematode Association and Host Infection. PMID:28811754
Bacterial diversity among four healthcare-associated institutes in Taiwan. PMID:28811583
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement. PMID:28811498
Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii. PMID:28809395
A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis. PMID:28807046
Response of Methylocystis sp. Strain SC2 to Salt Stress: Physiology, Global Transcriptome, and Amino Acid Profiles. PMID:28802275
Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction. PMID:28800608
Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia. PMID:28798742
Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism. PMID:28793934
Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism. PMID:28793929
Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes. PMID:28790980
A clinician's guide to microbiome analysis. PMID:28790452
Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice. PMID:28789710
Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates. PMID:28789705
Characterization of the piRNA pathway during development of the sea anemone Nematostella vectensis. PMID:28783426
Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. PMID:28777379
Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum. PMID:28776161
Effect of Silver or Copper Nanoparticles-Dispersed Silane Coatings on Biofilm Formation in Cooling Water Systems. PMID:28773758
Diversity of Cervical Microbiota in Asymptomatic Chlamydia trachomatis Genital Infection: A Pilot Study. PMID:28770172
Isolation of Uncultured Bacteria from Antarctica Using Long Incubation Periods and Low Nutritional Media. PMID:28769908
Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH. PMID:28769896
Automated assembly of a reference taxonomy for phylogenetic data synthesis. PMID:28765728
Bacteriophages as potential new mammalian pathogens. PMID:28765534
Microbiome and metabolome data integration provides insight into health and disease. PMID:28764956
Aggravation of collagen-induced arthritis by orally administered Porphyromonas gingivalis through modulation of the gut microbiota and gut immune system. PMID:28761156
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing. PMID:28761145
Iron in Micronutrient Powder Promotes an Unfavorable Gut Microbiota in Kenyan Infants. PMID:28753958
Drought and host selection influence bacterial community dynamics in the grass root microbiome. PMID:28753209
Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing. PMID:28751388
Visualizing the dental biofilm matrix by means of fluorescence lectin-binding analysis. PMID:28748044
Bacterial Community Dynamics and Biocement Formation during Stimulation and Augmentation: Implications for Soil Consolidation. PMID:28744265
Effects of oral florfenicol and azithromycin on gut microbiota and adipogenesis in mice. PMID:28742883
Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers. PMID:28740260
Bacterial and Archaeal Diversity in Hypersaline Cyanobacterial Mats Along a Transect in the Intertidal Flats of the Sultanate of Oman. PMID:28736793
Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor. PMID:28731479
An Exploration into the Bacterial Community under Different Pasteurization Conditions during Substrate Preparation (Composting-Phase II) for Agaricus bisporus Cultivation. PMID:28730353
Nutrient Acquisition and the Metabolic Potential of Photoferrotrophic Chlorobi. PMID:28729857
The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils. PMID:28729641
Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats. PMID:28727769
Deciphering functional diversification within the lichen microbiota by meta-omics. PMID:28724401
Genome analysis of E. coli isolated from Crohn's disease patients. PMID:28724357
Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid. PMID:28721204
Potential for Monitoring Gut Microbiota for Diagnosing Infections and Graft-versus-Host Disease in Cancer and Stem Cell Transplant Patients. PMID:28720679
The Impact of Gut Microbiota on Gender-Specific Differences in Immunity. PMID:28713378
Cyanobacterial Diversity in Microbial Mats from the Hypersaline Lagoon System of Araruama, Brazil: An In-depth Polyphasic Study. PMID:28713360
Microbial Populations of Stony Meteorites: Substrate Controls on First Colonizers. PMID:28713354
Concurrent Methane Production and Oxidation in Surface Sediment from Aarhus Bay, Denmark. PMID:28713339
Mink (Mustela vison) Gut Microbial Communities from Northeast China and Its Internal Relationship with Gender and Food Additives. PMID:28710513
Effects of dietary supplementation with two alternatives to antibiotics on intestinal microbiota of preweaned calves challenged with Escherichia coli K99. PMID:28710379
Nasopharyngeal microbiota in infants and changes during viral upper respiratory tract infection and acute otitis media. PMID:28708872
An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community. PMID:28708127
Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows. PMID:28704445
Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study. PMID:28704437
The influence of human exploration on the microbial community structure and ammonia oxidizing potential of the Su Bentu limestone cave in Sardinia, Italy. PMID:28704427
Incubation Temperature, But Not Pequi Oil Supplementation, Affects Methane Production, and the Ruminal Microbiota in a Rumen Simulation Technique (Rusitec) System. PMID:28701999
Microbiota composition of the koala (Phascolarctos cinereus) ocular and urogenital sites, and their association with Chlamydia infection and disease. PMID:28701755
Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PMID:28701560
Zooplankton as a potential vector for white band disease transmission in the endangered coral, Acropora cervicornis. PMID:28698820
Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization. PMID:28696422
Archaeal Diversity and CO2 Fixers in Carbonate-/Siliciclastic-Rock Groundwater Ecosystems. PMID:28694737
In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis. PMID:28694295
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge. PMID:28690595
A Plastid Phosphatidylglycerol Lipase Contributes to the Export of Acyl Groups from Plastids for Seed Oil Biosynthesis. PMID:28687655
Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants. PMID:28684633
Seasonal Stability in the Microbiomes of Temperate Gorgonians and the Red Coral Corallium rubrum Across the Mediterranean Sea. PMID:28681143
High-throughput sequencing technology reveals that continuous cropping of American ginseng results in changes in the microbial community in arable soil. PMID:28680459
The microbial community characteristics of ancient painted sculptures in Maijishan Grottoes, China. PMID:28678844
Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes. PMID:28674527
The Intestinal Eukaryotic and Bacterial Biome of Spotted Hyenas: The Impact of Social Status and Age on Diversity and Composition. PMID:28670573
The Gut Bacterial Community Composition of Wild Cervus albirostris (White-Lipped Deer) Detected by the 16S Ribosomal RNA Gene Sequencing. PMID:28667467
The metabolic footprint of the airway bacterial community in cystic fibrosis. PMID:28666467
The Impact of Hydration and Temperature on Bacterial Diversity in Arid Soil Mesocosms. PMID:28659896
Comparison of two bioinformatics tools used to characterize the microbial diversity and predictive functional attributes of microbial mats from Lake Obersee, Antarctica. PMID:28655556
Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization. PMID:28654083
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community. PMID:28644444
Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae. PMID:28644443
Unexpected Dominance of Elusive Acidobacteria in Early Industrial Soft Coal Slags. PMID:28642744
Distinct Bacterial Communities Associated with Massive and Branching Scleractinian Corals and Potential Linkages to Coral Susceptibility to Thermal or Cold Stress. PMID:28642738
Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis. PMID:28634574
Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants. PMID:28634475
Diversity analysis of gut microbiota in osteoporosis and osteopenia patients. PMID:28630804
Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures. PMID:28630141
Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity. PMID:28625991
Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. PMID:28625983
Dysbiosis in chronic periodontitis: Key microbial players and interactions with the human host. PMID:28623321
Evaluation and optimization of PCR primers for selective and quantitative detection of marine ANME subclusters involved in sulfate-dependent anaerobic methane oxidation. PMID:28620686
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. PMID:28620454
Variation of Soil Bacterial Communities in a Chronosequence of Rubber Tree (Hevea brasiliensis) Plantations. PMID:28611794
Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond. PMID:28611750
Specificity Re-evaluation of Oligonucleotide Probes for the Detection of Marine Picoplankton by Tyramide Signal Amplification-Fluorescent In Situ Hybridization. PMID:28611732
'Candidatus Cochliophilus cryoturris' (Coxiellaceae), a symbiont of the testate amoeba Cochliopodium minus. PMID:28611430
Ecophylogeny of the endospheric root fungal microbiome of co-occurring Agrostis stolonifera. PMID:28607843
Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome. PMID:28607435
Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer. PMID:28605506
Characterization of Sinus Microbiota by 16S Sequencing from Swabs. PMID:28600760
Soil nematodes show a mid-elevation diversity maximum and elevational zonation on Mt. Norikura, Japan. PMID:28596521
Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries. PMID:28594872
Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder. PMID:28593195
Lateral Gene Transfer Dynamics in the Ancient Bacterial Genus Streptomyces. PMID:28588130
Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes. PMID:28585941
Crenothrix are major methane consumers in stratified lakes. PMID:28585934
Impact of enzymatic digestion on bacterial community composition in CF airway samples. PMID:28584706
Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells. PMID:28584262
Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem Development. PMID:28579976
Colonization and Gut Flora Modulation of Lactobacillus kefiranofaciens ZW3 in the Intestinal Tract of Mice. PMID:28578494
Low temperature, autotrophic microbial denitrification using thiosulfate or thiocyanate as electron donor. PMID:28577026
Biogenic non-crystalline U(IV) revealed as major component in uranium ore deposits. PMID:28569759
Impact of metal stress on the production of secondary metabolites in Pteris vittata L. and associated rhizosphere bacterial communities. PMID:28567675
Meta-analysis To Define a Core Microbiota in the Swine Gut. PMID:28567446
Evaluating the Detection of Hydrocarbon-Degrading Bacteria in 16S rRNA Gene Sequencing Surveys. PMID:28567035
Comparison of the fecal bacterial microbiota of healthy and diarrheic foals at two and four weeks of life. PMID:28558788
Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities. PMID:28558684
Host Immune Selection of Rumen Bacteria through Salivary Secretory IgA. PMID:28553275
Spatial Structure of the Mormon Cricket Gut Microbiome and its Predicted Contribution to Nutrition and Immune Function. PMID:28553263
Microbiota-induced peritrophic matrix regulates midgut homeostasis and prevents systemic infection of malaria vector mosquitoes. PMID:28545061
Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment. PMID:28544522
Frutexites-like structures formed by iron oxidizing biofilms in the continental subsurface (Äspö Hard Rock Laboratory, Sweden). PMID:28542238
An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads. PMID:28540488
Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. PMID:28539641
Novel Large Sulfur Bacteria in the Metagenomes of Groundwater-Fed Chemosynthetic Microbial Mats in the Lake Huron Basin. PMID:28533768
The Variable Influence of Dispersant on Degradation of Oil Hydrocarbons in Subarctic Deep-Sea Sediments at Low Temperatures (0-5 °C). PMID:28533547
Succession in the petroleum reservoir microbiome through an oil field production lifecycle. PMID:28524866
Effects of replacing Leymus chinensis with whole-crop wheat hay on Holstein bull apparent digestibility, plasma parameters, rumen fermentation, and microbiota. PMID:28522863
Genomic epidemiology of global VIM-producing Enterobacteriaceae. PMID:28520983
How Really Ancient Is Paulinella Chromatophora? PMID:28515968
Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring. PMID:28512453
Midgut bacteria in deltamethrin-resistant, deltamethrin-susceptible, and field-caught populations of Plutella xylostella, and phenomics of the predominant midgut bacterium Enterococcus mundtii. PMID:28512315
Abundance and Co-Distribution of Widespread Marine Archaeal Lineages in Surface Sediments of Freshwater Water Bodies across the Iberian Peninsula. PMID:28508926
Microbial Community Response to Simulated Petroleum Seepage in Caspian Sea Sediments. PMID:28503173
Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment. PMID:28500038
A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems. PMID:28496434
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond. PMID:28489281
Relative Importance of Chemoautotrophy for Primary Production in a Light Exposed Marine Shallow Hydrothermal System. PMID:28484442
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.). PMID:28484436
Exploring the Ecological Coherence between the Spatial and Temporal Patterns of Bacterioplankton in Boreal Lakes. PMID:28484431
Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome. PMID:28480290
Soil Bacterial and Fungal Communities Show Distinct Recovery Patterns during Forest Ecosystem Restoration. PMID:28476769
Widespread position-specific conservation of synonymous rare codons within coding sequences. PMID:28475588
16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome. PMID:28467461
A Robust Framework for Microbial Archaeology. PMID:28460196
Interactive microbial distribution analysis using BioAtlas. PMID:28460071
Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes. PMID:28450856
Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome. PMID:28449706
Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study. PMID:28448623
Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry. PMID:28447615
Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis. PMID:28445246
Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility. PMID:28443082
Maternal obese-type gut microbiota differentially impact cognition, anxiety and compulsive behavior in male and female offspring in mice. PMID:28441394
Size-variable zone in V3 region of 16S rRNA. PMID:28440695
Dynamic microbiome evolution in social bees. PMID:28435856
Smokeless tobacco products harbor diverse bacterial microbiota that differ across products and brands. PMID:28432442
Bioinformatics in Germany: toward a national-level infrastructure. PMID:28430873
Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship. PMID:28425942
Resilience of the prokaryotic microbial community of Acropora digitifera to elevated temperature. PMID:28425179
Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning. PMID:28424662
β-Klotho deficiency protects against obesity through a crosstalk between liver, microbiota, and brown adipose tissue. PMID:28422755
Cultured microbes represent a substantial fraction of the human and mouse gut microbiota. PMID:28418756
Reconstructed ancestral enzymes suggest long-term cooling of Earth's photic zone since the Archean. PMID:28416654
Non-Random Inversion Landscapes in Prokaryotic Genomes Are Shaped by Heterogeneous Selection Pressures. PMID:28407093
Effect of cadexomer iodine on the microbial load and diversity of chronic non-healing diabetic foot ulcers complicated by biofilm in vivo. PMID:28402558
Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys. PMID:28400755
Short-Term Exposure of Paddy Soil Microbial Communities to Salt Stress Triggers Different Transcriptional Responses of Key Taxonomic Groups. PMID:28400748
Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes. PMID:28397816
Characterization of the Fecal Bacterial Microbiota of Healthy and Diarrheic Dairy Calves. PMID:28390070
Hexavalent chromium bioreduction and chemical precipitation of sulphate as a treatment of site-specific fly ash leachates. PMID:28390012
Soda pans of the Pannonian steppe harbor unique bacterial communities adapted to multiple extreme conditions. PMID:28389755
Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment. PMID:28388930
Strategies and Methodologies for Developing Microbial Detoxification Systems to Mitigate Mycotoxins. PMID:28387743
De novo transcriptome assembly and its annotation for the aposematic wood tiger moth (Parasemia plantaginis). PMID:28386528
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater. PMID:28384184
Microbial community response to hydration-desiccation cycles in desert soil. PMID:28383531
Cassava foliage affects the microbial diversity of Chinese indigenous geese caecum using 16S rRNA sequencing. PMID:28383519
Microbial communities associated with the anthropogenic, highly alkaline environment of a saline soda lime, Poland. PMID:28382378
Microbial composition of spiny ants (Hymenoptera: Formicidae: Polyrhachis) across their geographic range. PMID:28381207
Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents. PMID:28375213
Actual measurement, hygrothermal response experiment and growth prediction analysis of microbial contamination of central air conditioning system in Dalian, China. PMID:28367963
Cataloguing the bacterial community of the Great Salt Plains, Oklahoma using 16S rRNA based metagenomics pyrosequencing. PMID:28367406
Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen. PMID:28367142
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups. PMID:28365734
Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant. PMID:28363969
A comparison of sampling methods for examining the laryngeal microbiome. PMID:28362810
Patterns in the skin microbiota differ in children and teenagers between rural and urban environments. PMID:28361981
Draft Genome Sequence of Streptococcus caviae Strain Cavy grass 6T, Isolated from Domesticated Guinea Pig Fecal Samples. PMID:28360157
Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. PMID:28359254
Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media. PMID:28357413
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool. PMID:28350876
Soil classification predicts differences in prokaryotic communities across a range of geographically distant soils once pH is accounted for. PMID:28349950
Health and Disease Imprinted in the Time Variability of the Human Microbiome. PMID:28345059
Metagenomic analyses of bacterial endophytes associated with the phyllosphere of a Bt maize cultivar and its isogenic parental line from South Africa. PMID:28341909
UniEuk: Time to Speak a Common Language in Protistology! PMID:28337822
Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef. PMID:28335814
Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses. PMID:28331096
The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot. PMID:28330466
Diversity and bioactive potentials of culturable heterotrophic bacteria from the surficial sediments of the Arabian Sea. PMID:28330310
Oral microbiome in HIV-associated periodontitis. PMID:28328799
Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions. PMID:28326071
Benzene degradation in a denitrifying biofilm reactor: activity and microbial community composition. PMID:28321487
Recurrent rewiring and emergence of RNA regulatory networks. PMID:28320951
Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. PMID:28319100
[Periodontal inflammation affects the mechanical and immune barrier functions of mice gut]. PMID:28317363
Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment. PMID:28314724
Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure. PMID:28306234
A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater. PMID:28304358
Implication of the intestinal microbiome as a potential surrogate marker of immune responsiveness to experimental therapies in autoimmune diabetes. PMID:28301545
Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples. PMID:28291235
Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data. PMID:28290555
Exploring the under-investigated "microbial dark matter" of drinking water treatment plants. PMID:28290543
Sampling Strategies for Three-Dimensional Spatial Community Structures in IBD Microbiota Research. PMID:28286741
Enterotype May Drive the Dietary-Associated Cardiometabolic Risk Factors. PMID:28280715
CD40-signalling abrogates induction of RORγt+ Treg cells by intestinal CD103+ DCs and causes fatal colitis. PMID:28276457
Distinct Microbiome-Neuroimmune Signatures Correlate With Functional Abdominal Pain in Children With Autism Spectrum Disorder. PMID:28275689
How Can We Understand the Genomic Basis of Nematode Parasitism? PMID:28274802
Low-dose penicillin exposure in early life decreases Th17 and the susceptibility to DSS colitis in mice through gut microbiota modification. PMID:28272549
Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota. PMID:28272161
Combined Signature of the Fecal Microbiome and Metabolome in Patients with Gout. PMID:28270806
Viruses in the Oceanic Basement. PMID:28270584
Response of Deep Subsurface Microbial Community to Different Carbon Sources and Electron Acceptors during ∼2 months Incubation in Microcosms. PMID:28265265
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. PMID:28265262
Phylogenetic diversity and in situ detection of eukaryotes in anaerobic sludge digesters. PMID:28264042
β2→1-Fructans Modulate the Immune System In Vivo in a Microbiota-Dependent and -Independent Fashion. PMID:28261212
Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes. PMID:28261173
SAG-QC: quality control of single amplified genome information by subtracting non-target sequences based on sequence compositions. PMID:28259144
Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils. PMID:28258137
Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage. PMID:28253864
Cultivable gut bacteria provide a pathway for adaptation of Chrysolina herbacea to Mentha aquatica volatiles. PMID:28249605
Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients. PMID:28245856
Genome-wide analysis of EgEVE_1, a transcriptionally active endogenous viral element associated to small RNAs in Eucalyptus genomes. PMID:28235127
The best of both worlds: A combined approach for analyzing microalgal diversity via metabarcoding and morphology-based methods. PMID:28234997
Diversity and Universality of Endosymbiotic Rickettsia in the Fish Parasite Ichthyophthirius multifiliis. PMID:28232825
Microbial potential for carbon and nutrient cycling in a geogenic supercritical carbon dioxide reservoir. PMID:28229521
Assessing mycoplasma contamination of cell cultures by qPCR using a set of universal primer pairs targeting a 1.5 kb fragment of 16S rRNA genes. PMID:28225826
Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life. PMID:28224116
Metataxonomics reveal vultures as a reservoir for Clostridium perfringens. PMID:28223683
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data. PMID:28222096
MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data. PMID:28218638
The mycobiome of the human urinary tract: potential roles for fungi in urology. PMID:28217696
Attached and Suspended Denitrifier Communities in Pristine Limestone Aquifers Harbor High Fractions of Potential Autotrophs Oxidizing Reduced Iron and Sulfur Compounds. PMID:28214969
Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils. PMID:28213542
Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales. PMID:28212383
Effects of Dietary Yogurt on the Healthy Human Gastrointestinal (GI) Microbiome. PMID:28212267
Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens. PMID:28202080
Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank. PMID:28198425
Home-Made Cost Effective Preservation Buffer Is a Better Alternative to Commercial Preservation Methods for Microbiome Research. PMID:28197142
Mineralizing Filamentous Bacteria from the Prony Bay Hydrothermal Field Give New Insights into the Functioning of Serpentinization-Based Subseafloor Ecosystems. PMID:28197130
Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions. PMID:28194448
Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation. PMID:28194144
Use of Endophytic and Rhizosphere Bacteria To Improve Phytoremediation of Arsenic-Contaminated Industrial Soils by Autochthonous Betula celtiberica. PMID:28188207
New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp. MP131-18. PMID:28186197
Optimization of DNA extraction for advancing coral microbiota investigations. PMID:28179023
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PMID:28178307
Microbiota composition of simultaneously colonized mice housed under either a gnotobiotic isolator or individually ventilated cage regime. PMID:28169374
Successive DNA extractions improve characterization of soil microbial communities. PMID:28168105
A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds. PMID:28167932
Global Molecular Epidemiology of IMP-Producing Enterobacteriaceae. PMID:28167555
A Culture-Independent Approach to Enrich Endophytic Bacterial Cells from Sugarcane Stems for Community Characterization. PMID:28160057
Tight Coupling of Glaciecola spp. and Diatoms during Cold-Water Phytoplankton Spring Blooms. PMID:28154558
Microbiome sharing between children, livestock and household surfaces in western Kenya. PMID:28152044
Transcriptomic analysis of common carp anterior kidney during Cyprinid herpesvirus 3 infection: Immunoglobulin repertoire and homologue functional divergence. PMID:28148967
Sediment Microbial Diversity of Three Deep-Sea Hydrothermal Vents Southwest of the Azores. PMID:28144700
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling. PMID:28144631
No effect of Bt Cry1Ie toxin on bacterial diversity in the midgut of the Chinese honey bees, Apis cerana cerana (Hymenoptera, Apidae). PMID:28139751
Airway Microbial Community Turnover Differs by BPD Severity in Ventilated Preterm Infants. PMID:28129336
Fungal diversity in soils across a gradient of preserved Brazilian Cerrado. PMID:28127719
Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture. PMID:28127419
Comparison of bacterial microbiota of the predatory mite Neoseiulus cucumeris (Acari: Phytoseiidae) and its factitious prey Tyrophagus putrescentiae (Acari: Acaridae). PMID:28127053
Draft Genome Sequence of Bacillus sp. FMQ74, a Dairy-Contaminating Isolate from Raw Milk. PMID:28126940
Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event. PMID:28122054
Temporal and Spatial Variations of Bacterial and Faunal Communities Associated with Deep-Sea Wood Falls. PMID:28122036
Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions. PMID:28119466
Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons. PMID:28103920
Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes. PMID:28102323
Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems. PMID:28102290
Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System. PMID:28101080
Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants. PMID:28098228
Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments. PMID:28096736
Deciphering composition and function of the root microbiome of a legume plant. PMID:28095877
The Composition of Human Milk and Infant Faecal Microbiota Over the First Three Months of Life: A Pilot Study. PMID:28094284
Efficient Low-pH Iron Removal by a Microbial Iron Oxide Mound Ecosystem at Scalp Level Run. PMID:28087535
McrA primers for the detection and quantification of the anaerobic archaeal methanotroph 'Candidatus Methanoperedens nitroreducens'. PMID:28084539
Age-related environmental gradients influence invertebrate distribution in the Prince Charles Mountains, East Antarctica. PMID:28083092
Effect of Different Lignocellulosic Diets on Bacterial Microbiota and Hydrolytic Enzyme Activities in the Gut of the Cotton Boll Weevil (Anthonomus grandis). PMID:28082962
Defective ATG16L1-mediated removal of IRE1α drives Crohn's disease-like ileitis. PMID:28082357
Reconstruction of the Metabolic Potential of Acidophilic Sideroxydans Strains from the Metagenome of an Microaerophilic Enrichment Culture of Acidophilic Iron-Oxidizing Bacteria from a Pilot Plant for the Treatment of Acid Mine Drainage Reveals Metabolic Versatility and Adaptation to Life at Low pH. PMID:28066396
Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea. PMID:28066392
High Diversity of Planctomycetes in Soils of Two Lichen-Dominated Sub-Arctic Ecosystems of Northwestern Siberia. PMID:28066382
Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection. PMID:28066380
Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments. PMID:28060363
RNA virus receptor Rig-I monitors gut microbiota and inhibits colitis-associated colorectal cancer. PMID:28057020
Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes. PMID:28049420
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID:28045932
Bacterial community profile of contaminated soils in a typical antimony mining site. PMID:28039624
Strengths and Biases of High-Throughput Sequencing Data in the Characterization of Freshwater Ciliate Microbiomes. PMID:28032127
Microbial diversity and autotrophic activity in Kamchatka hot springs. PMID:28028613
Comparative analysis of the gut microbiota of black bears in China using high-throughput sequencing. PMID:28028611
Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus. PMID:28025668
Trace Elements Induce Predominance among Methanogenic Activity in Anaerobic Digestion. PMID:28018337
Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine. PMID:28018236
Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes. PMID:28009005
Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-control Study. PMID:28005692
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. PMID:28005526
Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation. PMID:28002063
Local and Regional Diversity Reveals Dispersal Limitation and Drift as Drivers for Groundwater Bacterial Communities from a Fractured Granite Formation. PMID:27999569
Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins. PMID:27998811
Resilient microorganisms in dust samples of the International Space Station-survival of the adaptation specialists. PMID:27998314
Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe. PMID:27996978
Intraclade Heterogeneity in Nitrogen Utilization by Marine Prokaryotes Revealed Using Stable Isotope Probing Coupled with Tag Sequencing (Tag-SIP). PMID:27994576
Rare Freshwater Ciliate Paramecium chlorelligerum Kahl, 1935 and Its Macronuclear Symbiotic Bacterium "Candidatus Holospora parva". PMID:27992463
Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis. PMID:27991530
Sybr Green- and TaqMan-Based Quantitative PCR Approaches Allow Assessment of the Abundance and Relative Distribution of Frankia Clusters in Soils. PMID:27986724
Effects of Actinomycete Secondary Metabolites on Sediment Microbial Communities. PMID:27986719
Alterations of the gut microbiome in Chinese patients with systemic lupus erythematosus. PMID:27980687
A novel real-time PCR assay for quantitative detection of Campylobacter fetus based on ribosomal sequences. PMID:27978826
The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance. PMID:27974049
The MYB107 Transcription Factor Positively Regulates Suberin Biosynthesis. PMID:27965303
New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11. PMID:27959345
Triatomine bugs, their microbiota and Trypanosoma cruzi: asymmetric responses of bacteria to an infected blood meal. PMID:27938415
Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms. PMID:27935593
Pristine but metal-rich Río Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes. PMID:27933457
Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea. PMID:27933046
Metabarcoding of marine nematodes - evaluation of similarity scores used in alignment-based taxonomy assignment approach. PMID:27932928
Metabarcoding of marine nematodes - evaluation of reference datasets used in tree-based taxonomy assignment approach. PMID:27932919
Airway Microbiota in Bronchoalveolar Lavage Fluid from Clinically Well Infants with Cystic Fibrosis. PMID:27930727
Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes. PMID:27917931
Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO2/CH4 Production Ratios. PMID:27913414
Dechlorination of three tetrachlorobenzene isomers by contaminated harbor sludge-derived enrichment cultures follows thermodynamically favorable reactions. PMID:27909745
Bacterial Active Community Cycling in Response to Solar Radiation and Their Influence on Nutrient Changes in a High-Altitude Wetland. PMID:27909430
Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach. PMID:27907121
MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing. PMID:27905885
Effect of humic acid on anaerobic digestion of cellulose and xylan in completely stirred tank reactors: inhibitory effect, mitigation of the inhibition and the dynamics of the microbial communities. PMID:27900444
Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. PMID:27900395
European Nucleotide Archive in 2016. PMID:27899630
MEGARes: an antimicrobial resistance database for high throughput sequencing. PMID:27899569
Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems. PMID:27889811
Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases. PMID:27889804
Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient. PMID:27886241
Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL. PMID:27881988
Phylogenetic distribution of plant snoRNA families. PMID:27881081
Assessment of the Fecal Microbiota in Beef Calves. PMID:27873352
An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers. PMID:27872277
High Biofilm Conductivity Maintained Despite Anode Potential Changes in a Geobacter-Enriched Biofilm. PMID:27870324
Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities. PMID:27868387
"Candidatus Gortzia shahrazadis", a Novel Endosymbiont of Paramecium multimicronucleatum and a Revision of the Biogeographical Distribution of Holospora-Like Bacteria. PMID:27867371
Enteral High Fat-Polyunsaturated Fatty Acid Blend Alters the Pathogen Composition of the Intestinal Microbiome in Premature Infants with an Enterostomy. PMID:27856001
Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy. PMID:27853840
Illumina sequencing-based community analysis of bacteria associated with different bryophytes collected from Tibet, China. PMID:27852238
Alterations in the airborne bacterial community during Asian dust events occurring between February and March 2015 in South Korea. PMID:27849049
A method for automated pathogenic content estimation with application to rheumatoid arthritis. PMID:27846901
Microbiome analysis reveals the abundance of bacterial pathogens in Rousettus leschenaultii guano. PMID:27845426
Widespread Distribution of Dehalococcoides mccartyi in the Houston Ship Channel and Galveston Bay, Texas, Sediments and the Potential for Reductive Dechlorination of PCDD/F in an Estuarine Environment. PMID:27844293
Characterizing bacterial communities in tilapia pond surface sediment and their responses to pond differences and temporal variations. PMID:27832505
Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size. PMID:27829355
Physical Factors Correlate to Microbial Community Structure and Nitrogen Cycling Gene Abundance in a Nitrate Fed Eutrophic Lagoon. PMID:27826296
Identity of major sulfur-cycle prokaryotes in freshwater lake ecosystems revealed by a comprehensive phylogenetic study of the dissimilatory adenylylsulfate reductase. PMID:27824124
Enrichment of Cryoconite Hole Anaerobes: Implications for the Subglacial Microbiome. PMID:27822618
Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes. PMID:27822559
Microbial Communities Are Well Adapted to Disturbances in Energy Input. PMID:27822558
Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. PMID:27822552
16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife. PMID:27822541
Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre. PMID:27822538
Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton. PMID:27822523
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. PMID:27822518
Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes. PMID:27820856
Remote transient Lactobacillus animalis bacteremia causing prosthetic hip joint infection: a case report. PMID:27814684
Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen. PMID:27812355
Altered Gut Microbiota Composition Associated with Eczema in Infants. PMID:27812181
The endotracheal tube microbiome associated with Pseudomonas aeruginosa or Staphylococcus epidermidis. PMID:27812037
Pectin enhances the effect of fecal microbiota transplantation in ulcerative colitis by delaying the loss of diversity of gut flora. PMID:27809778
Community Composition and Abundance of Bacterial, Archaeal and Nitrifying Populations in Savanna Soils on Contrasting Bedrock Material in Kruger National Park, South Africa. PMID:27807431
Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. PMID:27806710
High Ozone (O3) Affects the Fitness Associated with the Microbial Composition and Abundance of Q Biotype Bemisia tabaci. PMID:27799921
Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis. PMID:27799386
Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). PMID:27799338
The Roles of Biofilm Conductivity and Donor Substrate Kinetics in a Mixed-Culture Biofilm Anode. PMID:27797183
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora. PMID:27791007
Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats. PMID:27790213
A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model. PMID:27789346
Phylogenetic and functional potential links pH and N2O emissions in pasture soils. PMID:27782174
VSEARCH: a versatile open source tool for metagenomics. PMID:27781170
Wine microbiology is driven by vineyard and winery anthropogenic factors. PMID:27778455
The mycobiome of root canal infections is correlated to the bacteriome. PMID:27771826
Microbial community structure of a freshwater system receiving wastewater effluent. PMID:27761851
mdRNA-Seq analysis of marine microbial communities from the northern Red Sea. PMID:27759035
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
Disentangling the Taxonomy of Rickettsiales and Description of Two Novel Symbionts ("Candidatus Bealeia paramacronuclearis" and "Candidatus Fokinia cryptica") Sharing the Cytoplasm of the Ciliate Protist Paramecium biaurelia. PMID:27742680
Microbial legacies alter decomposition in response to simulated global change. PMID:27740610
Comparative analysis of the fecal bacterial community of five harbor seals (Phoca vitulina). PMID:27734626
Changes in the Bacteriome of Honey Bees Associated with the Parasite Varroa destructor, and Pathogens Nosema and Lotmaria passim. PMID:27730366
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes. PMID:27729905
Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat. PMID:27727301
Comparative Assessment of Mediterranean Gorgonian-Associated Microbial Communities Reveals Conserved Core and Locally Variant Bacteria. PMID:27726033
Land-use choices follow profitability at the expense of ecological functions in Indonesian smallholder landscapes. PMID:27725673
The structure and diversity of human, animal and environmental resistomes. PMID:27717408
Modulation of the Bifidobacterial Communities of the Dog Microbiota by Zeolite. PMID:27713735
Differences in the Composition of Archaeal Communities in Sediments from Contrasting Zones of Lake Taihu. PMID:27708641
Mining gut microbiome oligopeptides by functional metaproteome display. PMID:27703179
Probing the diversity of healthy oral microbiome with bioinformatics approaches. PMID:27697111
Transcriptome Profiling of Petal Abscission Zone and Functional Analysis of an Aux/IAA Family Gene RhIAA16 Involved in Petal Shedding in Rose. PMID:27695465
Microbiome in the Apical Root Canal System of Teeth with Post-Treatment Apical Periodontitis. PMID:27689802
Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies. PMID:27683576
A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymenophorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls. PMID:27683199
Enrichment of Fusobacteria in Sea Surface Oil Slicks from the Deepwater Horizon Oil Spill. PMID:27681918
Next generation sequencing data of a defined microbial mock community. PMID:27673566
Probiotic legacy effects on gut microbial assembly in tilapia larvae. PMID:27670882
Assessing the composition of microbial communities in textile wastewater treatment plants in comparison with municipal wastewater treatment plants. PMID:27667132
IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies. PMID:27659943
Microbial Characterization of Qatari Barchan Sand Dunes. PMID:27655399
Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests. PMID:27650273
Effects of Elevated Tropospheric Ozone Concentration on the Bacterial Community in the Phyllosphere and Rhizoplane of Rice. PMID:27643794
Household siblings and nasal and fecal microbiota in infants. PMID:27638139
MetaStorm: A Public Resource for Customizable Metagenomics Annotation. PMID:27632579
Expanding the UniFrac Toolbox. PMID:27632205
Investigation of sinonasal microbiome spatial organization in chronic rhinosinusitis. PMID:27627048
Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents. PMID:27622637
Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini. PMID:27619014
The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle. PMID:27617976
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies. PMID:27617693
Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. PMID:27617057
rRNAFilter: A Fast Approach for Ribosomal RNA Read Removal Without a Reference Database. PMID:27610931
Prophylactic Administration of Vector-Encoded Porcine Granulocyte-Colony Stimulating Factor Reduces Salmonella Shedding, Tonsil Colonization, and Microbiota Alterations of the Gastrointestinal Tract in Salmonella-Challenged Swine. PMID:27610361
Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume. PMID:27598790
Phylogeography, Salinity Adaptations and Metabolic Potential of the Candidate Division KB1 Bacteria Based on a Partial Single Cell Genome. PMID:27597842
Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales. PMID:27595198
Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis). PMID:27594858
Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments. PMID:27594854
The Core Gut Microbiome of the American Cockroach, Periplaneta americana, Is Stable and Resilient to Dietary Shifts. PMID:27590811
Influence of soil contamination with PAH on microbial community dynamics and expression level of genes responsible for biodegradation of PAH and production of rhamnolipids. PMID:27585583
Bacterial succession and metabolite changes during flax (Linum usitatissimum L.) retting with Bacillus cereus HDYM-02. PMID:27585559
Metagenomic Analysis of Some Potential Nitrogen-Fixing Bacteria in Arable Soils at Different Formation Processes. PMID:27581036
Gut microbiome and dietary patterns in different Saudi populations and monkeys. PMID:27578328
Species-function relationships shape ecological properties of the human gut microbiome. PMID:27573110
Endemic hydrothermal vent species identified in the open ocean seed bank. PMID:27573109
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom. PMID:27572439
Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements. PMID:27566762
Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem. PMID:27562262
High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice. PMID:27562257
Considerations For Optimizing Microbiome Analysis Using a Marker Gene. PMID:27551678
Soil bacterial and fungal community dynamics in relation to Panax notoginseng death rate in a continuous cropping system. PMID:27549984
Effect of Vitamin E With Therapeutic Iron Supplementation on Iron Repletion and Gut Microbiome in US Iron Deficient Infants and Toddlers. PMID:27548249
Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen. PMID:27547442
Lichen-Associated Fungal Community in Hypogymnia hypotrypa (Parmeliaceae, Ascomycota) Affected by Geographic Distribution and Altitude. PMID:27547204
Resolvin E1 Reverses Experimental Periodontitis and Dysbiosis. PMID:27543615
Long-Term Recovery of Microbial Communities in the Boreal Bryosphere Following Fire Disturbance. PMID:27538873
Propionibacterium acnes overabundance and natural killer group 2 member D system activation in corpus-dominant lymphocytic gastritis. PMID:27538697
How Clonal Is Clonal? Genome Plasticity across Multicellular Segments of a "Candidatus Marithrix sp." Filament from Sulfidic, Briny Seafloor Sediments in the Gulf of Mexico. PMID:27536274
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. PMID:27525040
COMAN: a web server for comprehensive metatranscriptomics analysis. PMID:27515514
Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis. PMID:27512997
Does the Urinary Microbiome Play a Role in Urgency Urinary Incontinence and Its Severity? PMID:27512653
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes. PMID:27512389
Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants. PMID:27507222
Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris. PMID:27487037
Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene. PMID:27485508
INC-Seq: accurate single molecule reads using nanopore sequencing. PMID:27485345
Strain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees. PMID:27482856
Censusing marine eukaryotic diversity in the twenty-first century. PMID:27481783
On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. PMID:27480115
Members of the methanotrophic genus Methylomarinum inhabit inland mud pots. PMID:27478692
Where are the polyps? Molecular identification, distribution and population differentiation of Aurelia aurita jellyfish polyps in the southern North Sea area. PMID:27478251
Populations of Stored Product Mite Tyrophagus putrescentiae Differ in Their Bacterial Communities. PMID:27462300
Endozoicomonas Are Specific, Facultative Symbionts of Sea Squirts. PMID:27462299
Summer holidays as break-point in shaping a tannery sludge microbial community around a stable core microbiota. PMID:27461169
Unanticipated Geochemical and Microbial Community Structure under Seasonal Ice Cover in a Dilute, Dimictic Arctic Lake. PMID:27458438
"Candidatus Propionivibrio aalborgensis": A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants. PMID:27458436
On the origin and evolutionary consequences of gene body DNA methylation. PMID:27457936
Water management impacts rice methylmercury and the soil microbiome. PMID:27450246
Taxonomic Assessment of Rumen Microbiota Using Total RNA and Targeted Amplicon Sequencing Approaches. PMID:27446027
A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments. PMID:27446026
Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions. PMID:27446006
Microbiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific Octocorals. PMID:27445997
Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort. PMID:27442429
Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium. PMID:27434424
Global biogeography of microbial nitrogen-cycling traits in soil. PMID:27432978
Vancomycin-Resistant Enterococci and Bacterial Community Structure following a Sewage Spill into an Aquatic Environment. PMID:27422829
Differential Effects of Azithromycin, Doxycycline, and Cotrimoxazole in Ingested Blood on the Vectorial Capacity of Malaria Mosquitoes. PMID:27419152
Mobile genes in the human microbiome are structured from global to individual scales. PMID:27409808
High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite. PMID:27400733
Lactobacillus fermentum CRL1446 Ameliorates Oxidative and Metabolic Parameters by Increasing Intestinal Feruloyl Esterase Activity and Modulating Microbiota in Caloric-Restricted Mice. PMID:27399766
Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor. PMID:27399199
Influences of plant type on bacterial and archaeal communities in constructed wetland treating polluted river water. PMID:27392623
Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. PMID:27392086
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. PMID:27388460
Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya. PMID:27388368
Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond. PMID:27383682
After All, Only Millions? PMID:27381294
Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy. PMID:27375571
HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts. PMID:27375564
LotuS: an efficient and user-friendly OTU processing pipeline. PMID:27367037
Factors Influencing Bacterial Diversity and Community Composition in Municipal Drinking Waters in the Ohio River Basin, USA. PMID:27362708
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia. PMID:27357680
The Fecal Microbiota Profile and Bronchiolitis in Infants. PMID:27354456
Investigation of bacterial and archaeal communities: novel protocols using modern sequencing by Illumina MiSeq and traditional DGGE-cloning. PMID:27338271
Molecular Evolution of the Oxygen-Binding Hemerythrin Domain. PMID:27336621
Unraveling the Physiological Roles of the Cyanobacterium Geitlerinema sp. BBD and Other Black Band Disease Community Members through Genomic Analysis of a Mixed Culture. PMID:27336619
Adjusting microbiome profiles for differences in microbial load by spike-in bacteria. PMID:27329048
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. PMID:27327495
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses. PMID:27326545
Characterization of the microbiome of nipple aspirate fluid of breast cancer survivors. PMID:27324944
A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema. PMID:27324572
Seasonality and Locality Affect the Diversity of Anopheles gambiae and Anopheles coluzzii Midgut Microbiota from Ghana. PMID:27322614
Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring. PMID:27315483
The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments. PMID:27313567
Diversity, structure and convergent evolution of the global sponge microbiome. PMID:27306690
Capturing One of the Human Gut Microbiome's Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data. PMID:27303377
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. PMID:27300277
A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria. PMID:27283264
Differential Incorporation of Carbon Substrates among Microbial Populations Identified by Field-Based, DNA Stable-Isotope Probing in South China Sea. PMID:27280442
Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. PMID:27279900
Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules. PMID:27276347
Spirochaetes dominate the microbial community associated with the red coral Corallium rubrum on a broad geographic scale. PMID:27263657
MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses. PMID:27259475
Bacterial Community Diversity Harboured by Interacting Species. PMID:27258532
Abundance of sulfur-degrading bacteria in a benthic bacterial community of shallow sea sediment in the off-Terengganu coast of the South China Sea. PMID:27256005
The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation. PMID:27242734
Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil. PMID:27242725
Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea. PMID:27242706
Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria. PMID:27242705
Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies. PMID:27242686
Sample Processing Impacts the Viability and Cultivability of the Sponge Microbiome. PMID:27242673
Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large Intestine. PMID:27239562
Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes. PMID:27235440
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs. PMID:27235417
Biological characterization of the hygrobafilomycin antibiotic JBIR-100 and bioinformatic insights into the hygrolide family of natural products. PMID:27234886
Comparative Analysis of Gut Microbiota of Native Tibetan and Han Populations Living at Different Altitudes. PMID:27232599
The POU/Oct Transcription Factor Pdm1/nub Is Necessary for a Beneficial Gut Microbiota and Normal Lifespan of Drosophila. PMID:27231014
Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation. PMID:27222666
Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens. PMID:27208108
Nitrogen and Oxygen Isotope Effects of Ammonia Oxidation by Thermophilic Thaumarchaeota from a Geothermal Water Stream. PMID:27208107
Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria. PMID:27199936
Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. PMID:27199933
Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem. PMID:27199914
A Novel Extracellular Gut Symbiont in the Marine Worm Priapulus caudatus (Priapulida) Reveals an Alphaproteobacterial Symbiont Clade of the Ecdysozoa. PMID:27199899
A systematic computational analysis of the rRNA-3' UTR sequence complementarity suggests a regulatory mechanism influencing post-termination events in metazoan translation. PMID:27190231
Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies. PMID:27188959
Free-living amoebae and their associated bacteria in Austrian cooling towers: a 1-year routine screening. PMID:27177720
Nutrient uplift in a cyclonic eddy increases diversity, primary productivity and iron demand of microbial communities relative to a western boundary current. PMID:27168982
Phylogeny-aware identification and correction of taxonomically mislabeled sequences. PMID:27166378
The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model. PMID:27160191
Electricity generation from an inorganic sulfur compound containing mining wastewater by acidophilic microorganisms. PMID:27155452
Long-term changes of bacterial and viral compositions in the intestine of a recovered Clostridium difficile patient after fecal microbiota transplantation. PMID:27148577
Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology. PMID:27148242
Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis). PMID:27148239
Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics. PMID:27148170
Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota. PMID:27147260
The role of the gastrointestinal microbiome in infectious complications during induction chemotherapy for acute myeloid leukemia. PMID:27142181
Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection. PMID:27140611
Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome. PMID:27140533
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains. PMID:27138046
RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria. PMID:27137126
Microbiome of Deep Dentinal Caries Lesions in Teeth with Symptomatic Irreversible Pulpitis. PMID:27135405
Comparison of Varroa destructor and Worker Honeybee Microbiota Within Hives Indicates Shared Bacteria. PMID:27129319
Effects of Isoflavone-Enriched Feed on the Rumen Microbiota in Dairy Cows. PMID:27124615
Dynamics of the fecal microbiome in patients with recurrent and nonrecurrent Clostridium difficile infection. PMID:27121861
Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate. PMID:27114887
Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments. PMID:27114874
Reducing Salt in Raw Pork Sausages Increases Spoilage and Correlates with Reduced Bacterial Diversity. PMID:27107120
Contribution of Vegetation to the Microbial Composition of Nearby Outdoor Air. PMID:27107117
In Search of Alternative Antibiotic Drugs: Quorum-Quenching Activity in Sponges and their Bacterial Isolates. PMID:27092109
The effects of Bt Cry1Ie toxin on bacterial diversity in the midgut of Apis mellifera ligustica (Hymenoptera: Apidae). PMID:27090812
Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome. PMID:27087247
The microbiome associated with equine periodontitis and oral health. PMID:27080859
Airway Microbiota in Severe Asthma and Relationship to Asthma Severity and Phenotypes. PMID:27078029
Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PMID:27077014
Characterization of microbial communities in wetland mesocosms receiving caffeine-enriched wastewater. PMID:27068910
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle. PMID:27068581
Using Small RNA Deep Sequencing Data to Detect Human Viruses. PMID:27066498
Temporal and Spatial Dynamics of Archaeal Communities in Two Freshwater Lakes at Different Trophic Status. PMID:27065997
Mycobacterium avium Subspecies paratuberculosis Infection Modifies Gut Microbiota under Different Dietary Conditions in a Rabbit Model. PMID:27065994
Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. PMID:27065971
Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy. PMID:27065954
Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota. PMID:27061249
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters. PMID:27058503
Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. PMID:27054497
Gut Bacterial Community of the Xylophagous Cockroaches Cryptocercus punctulatus and Parasphaeria boleiriana. PMID:27054320
Microbial-Derived Metabolites Reflect an Altered Intestinal Microbiota during Catch-Up Growth in Undernourished Neonatal Mice. PMID:27052538
First report of Wautersiella falsenii genomovar 2 isolated from the respiratory tract of an immunosuppressed man. PMID:27051582
Composition and Interactions among Bacterial, Microeukaryotic, and T4-like Viral Assemblages in Lakes from Both Polar Zones. PMID:27047459
Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure. PMID:27047451
Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland. PMID:27020916
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. PMID:27015005
Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level. PMID:27014241
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. PMID:27004904
Modeling the integration of bacterial rRNA fragments into the human cancer genome. PMID:27001685
Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis. PMID:27000765
Ecological and evolutionary significance of novel protist lineages. PMID:26996654
Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura). PMID:26994086
Variability of the Sheep Lung Microbiota. PMID:26994083
Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PMID:26989611
R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring. PMID:26989149
Genome-Based Microbial Taxonomy Coming of Age. PMID:26988968
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community. PMID:26986467
Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden. PMID:26985997
Comparative Genomic Analysis of Sulfurospirillum cavolei MES Reconstructed from the Metagenome of an Electrosynthetic Microbiome. PMID:26983005
Influences of Plant Species, Season and Location on Leaf Endophytic Bacterial Communities of Non-Cultivated Plants. PMID:26974817
Bacterial Community Succession in Pine-Wood Decomposition. PMID:26973611
Ecosystem function decays by fungal outbreaks in Antarctic microbial mats. PMID:26972923
Paratransgenesis to control malaria vectors: a semi-field pilot study. PMID:26965746
A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA. PMID:26965054
Survey of microbial populations within Lake Michigan nearshore waters at two Chicago public beaches. PMID:26958608
Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree. PMID:26944845
Capturing the most wanted taxa through cross-sample correlations. PMID:26943627
Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen. PMID:26943620
Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease. PMID:26943329
Dispersal of Bacillus subtilis and its effect on strawberry phyllosphere microbiota under open field and protection conditions. PMID:26936109
A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge. PMID:26935537
Bacterial Communities of Three Saline Meromictic Lakes in Central Asia. PMID:26934492
Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. PMID:26931235
Changes in snoRNA and snRNA Abundance in the Human, Chimpanzee, Macaque, and Mouse Brain. PMID:26926764
Seasonal variation in nifH abundance and expression of cyanobacterial communities associated with boreal feather mosses. PMID:26918665
Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State. PMID:26916743
Thiosulfate oxidation by Thiomicrospira thermophila: metabolic flexibility in response to ambient geochemistry. PMID:26914243
Expansion of Microbial Forensics. PMID:26912746
Simultaneous DNA-based diet analysis of breeding, non-breeding and chick Adélie penguins. PMID:26909171
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge. PMID:26905629
Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France). PMID:26904006
Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility. PMID:26896143
Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. PMID:26895175
Evaluation of Enrichment Protocols for Bacterial Endosymbionts of Ciliates by Real-Time PCR. PMID:26894821
Opposing phylogenetic diversity gradients of plant and soil bacterial communities. PMID:26888037
Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice. PMID:26884164
FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing. PMID:26880910
Unique sequence characteristics account for good DGGE separation of almost full-length 18S rDNAs. PMID:26873559
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. PMID:26872043
Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane. PMID:26870011
Microbiome of the paranasal sinuses: Update and literature review. PMID:26867525
Plankton networks driving carbon export in the oligotrophic ocean. PMID:26863193
High-resolution phylogenetic microbial community profiling. PMID:26859772
Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing. PMID:26859146
Microbial Communities in Methane- and Short Chain Alkane-Rich Hydrothermal Sediments of Guaymas Basin. PMID:26858698
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome. PMID:26853110
Comparison of Fecal Microbiota between German Holstein Dairy Cows with and without Left-Sided Displacement of the Abomasum. PMID:26842700
Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PMID:26839738
Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea. PMID:26839246
Spatial Interaction of Archaeal Ammonia-Oxidizers and Nitrite-Oxidizing Bacteria in an Unfertilized Grassland Soil. PMID:26834718
Structural Iron (II) of Basaltic Glass as an Energy Source for Zetaproteobacteria in an Abyssal Plain Environment, Off the Mid Atlantic Ridge. PMID:26834704
Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L. PMID:26832927
Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. PMID:26823996
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer. PMID:26823973
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data. PMID:26821617
Chamber Specific Gene Expression Landscape of the Zebrafish Heart. PMID:26815362
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. PMID:26814032
Molecular Identification of Staphylococcus aureus in Airway Samples from Children with Cystic Fibrosis. PMID:26808658
Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs. PMID:26787827
Long term repeated fire disturbance alters soil bacterial diversity but not the abundance in an Australian wet sclerophyll forest. PMID:26787458
Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis. PMID:26784944
Expanding the World of Marine Bacterial and Archaeal Clades. PMID:26779174
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. PMID:26779135
Selective Pressure of Temperature on Competition and Cross-Feeding within Denitrifying and Fermentative Microbial Communities. PMID:26779132
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China. PMID:26771927
Antibiotic and Antiinflammatory Therapy Transiently Reduces Inflammation and Hypercoagulation in Acutely SIV-Infected Pigtailed Macaques. PMID:26764484
Enhancement of HIV-1 infection and intestinal CD4+ T cell depletion ex vivo by gut microbes altered during chronic HIV-1 infection. PMID:26762145
The 5300-year-old Helicobacter pylori genome of the Iceman. PMID:26744403
A Novel Pathway for Triacylglycerol Biosynthesis Is Responsible for the Accumulation of Massive Quantities of Glycerolipids in the Surface Wax of Bayberry (Myrica pensylvanica) Fruit. PMID:26744217
Assessing Bacterial Diversity in the Rhizosphere of Thymus zygis Growing in the Sierra Nevada National Park (Spain) through Culture-Dependent and Independent Approaches. PMID:26741495
Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene. PMID:26739153
The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics. PMID:26734060
Groundwater Isolation Governs Chemistry and Microbial Community Structure along Hydrologic Flowpaths. PMID:26733990
gbtools: Interactive Visualization of Metagenome Bins in R. PMID:26732662
"Candidatus Fokinia solitaria", a Novel "Stand-Alone" Symbiotic Lineage of Midichloriaceae (Rickettsiales). PMID:26731731
SeqFeatR for the Discovery of Feature-Sequence Associations. PMID:26731669
Dead or alive: Deoxyribonuclease I sensitive bacteria and implications for the sinus microbiome. PMID:26715059
Identification of Specialists and Abundance-Occupancy Relationships among Intestinal Bacteria of Aves, Mammalia, and Actinopterygii. PMID:26712546
Fickle or Faithful: The Roles of Host and Environmental Context in Determining Symbiont Composition in Two Bathymodioline Mussels. PMID:26710314
Age-Related Shifts in Bacterial Diversity in a Reef Coral. PMID:26700869
Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia). PMID:26696965
Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils. PMID:26694644
Network construction and structure detection with metagenomic count data. PMID:26692900
Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation. PMID:26682860
Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads. PMID:26680455
Community Structure of Arbuscular Mycorrhizal Fungi in Rhizospheric Soil of a Transgenic High-Methionine Soybean and a Near Isogenic Variety. PMID:26658560
The impact of rearing environment on the development of gut microbiota in tilapia larvae. PMID:26658351
Impact of oil spills on coral reefs can be reduced by bioremediation using probiotic microbiota. PMID:26658023
A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei. PMID:26655754
Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database. PMID:26651617
The Scion/Rootstock Genotypes and Habitats Affect Arbuscular Mycorrhizal Fungal Community in Citrus. PMID:26648932
Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting. PMID:26646166
Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes. PMID:26637598
Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source. PMID:26636551
riboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted Metagenomics. PMID:26635865
Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage. PMID:26635756
Prokaryotes in Subsoil-Evidence for a Strong Spatial Separation of Different Phyla by Analysing Co-occurrence Networks. PMID:26635741
De novo and comparative transcriptome analysis of cultivated and wild spinach. PMID:26635144
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. PMID:26633628
The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study. PMID:26626101
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. PMID:26623545
Improvement of barley genome annotations by deciphering the Haruna Nijo genome. PMID:26622062
Lactic acid is a sperm motility inactivation factor in the sperm storage tubules. PMID:26619826
Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage. PMID:26615204
StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes. PMID:26615197
Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. PMID:26610268
Complete nitrification by a single microorganism. PMID:26610025
Surveying the endomicrobiome and ectomicrobiome of bark beetles: The case of Dendroctonus simplex. PMID:26608752
SymbioGenomesDB: a database for the integration and access to knowledge on host-symbiont relationships. PMID:26607947
Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots. PMID:26603211
Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics. PMID:26594662
probeBase--an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016. PMID:26586809
Fungal Community Assembly in the Amazonian Dark Earth. PMID:26585119
Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus. PMID:26579722
Diversity and structure of soil bacterial communities in the Fildes Region (maritime Antarctica) as revealed by 454 pyrosequencing. PMID:26579095
Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth. PMID:26578794
Iron Modulates Butyrate Production by a Child Gut Microbiota In Vitro. PMID:26578675
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut. PMID:26577924
Sample storage conditions significantly influence faecal microbiome profiles. PMID:26572876
"Candidatus Finniella" (Rickettsiales, Alphaproteobacteria), Novel Endosymbionts of Viridiraptorid Amoeboflagellates (Cercozoa, Rhizaria). PMID:26567303
Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake. PMID:26567300
Assessment of microbial populations within Chicago area nearshore waters and interfaces with river systems. PMID:26566540
Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. PMID:26563586
Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta. PMID:26561437
Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis. PMID:26556047
Stable and sporadic symbiotic communities of coral and algal holobionts. PMID:26555246
Methanosarcina Play an Important Role in Anaerobic Co-Digestion of the Seaweed Ulva lactuca: Taxonomy and Predicted Metabolism of Functional Microbial Communities. PMID:26555136
A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies. PMID:26553806
A bulk segregant transcriptome analysis reveals metabolic and cellular processes associated with Orange allelic variation and fruit β-carotene accumulation in melon fruit. PMID:26553015
High Bacterial Diversity and Phylogenetic Novelty in Dark Euxinic Freshwaters Analyzed by 16S Tag Community Profiling. PMID:26552395
Microbial immigration across the Mediterranean via airborne dust. PMID:26542754
Administration of defined microbiota is protective in a murine Salmonella infection model. PMID:26531327
Salt resistance genes revealed by functional metagenomics from brines and moderate-salinity rhizosphere within a hypersaline environment. PMID:26528268
AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities. PMID:26523925
Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry. PMID:26504572
Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats. PMID:26499760
MHC variation sculpts individualized microbial communities that control susceptibility to enteric infection. PMID:26494419
Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses. PMID:26491167
Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence. PMID:26484274
Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics. PMID:26484187
Metagenomic evidence for reciprocal particle exchange between the mainstem estuary and lateral bay sediments of the lower Columbia River. PMID:26483785
Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll. PMID:26481089
Messenger RNA exchange between scions and rootstocks in grafted grapevines. PMID:26480945
Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract. PMID:26479034
Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes. PMID:26475107
Meat, dairy and plant proteins alter bacterial composition of rat gut bacteria. PMID:26463271
Variations of Tongue Coating Microbiota in Patients with Gastric Cancer. PMID:26457297
MicroRNA-146a constrains multiple parameters of intestinal immunity and increases susceptibility to DSS colitis. PMID:26456940
Solving a Bloody Mess: B-Vitamin Independent Metabolic Convergence among Gammaproteobacterial Obligate Endosymbionts from Blood-Feeding Arthropods and the Leech Haementeria officinalis. PMID:26454017
Large variability of bathypelagic microbial eukaryotic communities across the world's oceans. PMID:26451501
DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection. PMID:26446672
Profiling the Succession of Bacterial Communities throughout the Life Stages of a Higher Termite Nasutitermes arborum (Termitidae, Nasutitermitinae) Using 16S rRNA Gene Pyrosequencing. PMID:26444989
Growth and activity of ANME clades with different sulfate and sulfide concentrations in the presence of methane. PMID:26441917
Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates. PMID:26441877
Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils. PMID:26440376
Urban Market Gardening and Rodent-Borne Pathogenic Leptospira in Arid Zones: A Case Study in Niamey, Niger. PMID:26437456
A new tool for long-term studies of POM-bacteria interactions: overcoming the century-old Bottle Effect. PMID:26435525
Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection. PMID:26427004
Thiosulphate conversion in a methane and acetate fed membrane bioreactor. PMID:26423279
Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem. PMID:26421612
Transcriptome analysis of an apple (Malus × domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulation. PMID:26417021
Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers. PMID:26394010
Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses. PMID:26394007
Exometabolite niche partitioning among sympatric soil bacteria. PMID:26392107
Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression. PMID:26388838
Synthesis of phylogeny and taxonomy into a comprehensive tree of life. PMID:26385966
De Novo Assembly and Characterization of Four Anthozoan (Phylum Cnidaria) Transcriptomes. PMID:26384772
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels. PMID:26371554
Predicting microbial traits with phylogenies. PMID:26371406
Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments. PMID:26359912
A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon. PMID:26358418
454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils. PMID:26355944
Patterns of Endemism and Habitat Selection in Coalbed Microbial Communities. PMID:26341214
Characterization of the In Situ Ecophysiology of Novel Phylotypes in Nutrient Removal Activated Sludge Treatment Plants. PMID:26340564
Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes. PMID:26337239
Origin and higher-level diversification of acariform mites - evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment. PMID:26330076
Dynamics of an experimental microbial invasion. PMID:26324928
Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis. PMID:26322033
The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches. PMID:26322028
Characterization of the Bacterial Community Naturally Present on Commercially Grown Basil Leaves: Evaluation of Sample Preparation Prior to Culture-Independent Techniques. PMID:26308033
Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. PMID:26303516
Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites. PMID:26300865
Primer and platform effects on 16S rRNA tag sequencing. PMID:26300854
Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. PMID:26296065
A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife. PMID:26284930
Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics. PMID:26283689
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. PMID:26283343
Uncovering co-expression gene network modules regulating fruit acidity in diverse apples. PMID:26276125
Climate change and physical disturbance manipulations result in distinct biological soil crust communities. PMID:26276111
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils. PMID:26274049
Bacterial Landscape of Bloodstream Infections in Neutropenic Patients via High Throughput Sequencing. PMID:26270467
Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing. PMID:26264042
Assessing the global phylum level diversity within the bacterial domain: A review. PMID:26257925
Sex differences in gut fermentation and immune parameters in rats fed an oligofructose-supplemented diet. PMID:26251695
The effect of carbon subsidies on marine planktonic niche partitioning and recruitment during biofilm assembly. PMID:26236289
Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. PMID:26236284
Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. PMID:26230048
Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data. PMID:26226014
Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary. PMID:26221420
Oral Administration of P. gingivalis Induces Dysbiosis of Gut Microbiota and Impaired Barrier Function Leading to Dissemination of Enterobacteria to the Liver. PMID:26218067
Novel molecular markers for the detection of methanogens and phylogenetic analyses of methanogenic communities. PMID:26217325
Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks. PMID:26215102
The female urinary microbiome in urgency urinary incontinence. PMID:26210757
Comparative Transcriptomes Analysis of Red- and White-Fleshed Apples in an F1 Population of Malus sieversii f. niedzwetzkyana Crossed with M. domestica 'Fuji'. PMID:26207813
Developmental succession of the microbiome of Culex mosquitoes. PMID:26205080
Tsv-N1: A Novel DNA Algal Virus that Infects Tetraselmis striata. PMID:26193304
Genome Diversity of Spore-Forming Firmicutes. PMID:26184964
Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities. PMID:26182345
Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation. PMID:26157435
Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome. PMID:26157422
Identification, Functional Characterization, and Evolution of Terpene Synthases from a Basal Dicot. PMID:26157114
Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands. PMID:26150465
Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine. PMID:26147095
Abundance and Relative Distribution of Frankia Host Infection Groups Under Actinorhizal Alnus glutinosa and Non-actinorhizal Betula nigra Trees. PMID:26143359
Earthworms modify microbial community structure and accelerate maize stover decomposition during vermicomposting. PMID:26139410
Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome. PMID:26137199
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes. PMID:26136581
Guanchochroma wildpretii gen. et spec. nov. (Ochrophyta) Provides New Insights into the Diversification and Evolution of the Algal Class Synchromophyceae. PMID:26135124
Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing. PMID:26134411
Identifying novel sequence variants of RNA 3D motifs. PMID:26130723
Effects of high doses of vitamin D3 on mucosa-associated gut microbiome vary between regions of the human gastrointestinal tract. PMID:26130323
The immunotranscriptome of the Caribbean reef-building coral Pseudodiploria strigosa. PMID:26123975
Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice. PMID:26121046
MiDAS: the field guide to the microbes of activated sludge. PMID:26120139
Cable Bacteria in Freshwater Sediments. PMID:26116678
The Microbiota and Abundance of the Class 1 Integron-Integrase Gene in Tropical Sewage Treatment Plant Influent and Activated Sludge. PMID:26115093
Relationship between the decomposition process of coarse woody debris and fungal community structure as detected by high-throughput sequencing in a deciduous broad-leaved forest in Japan. PMID:26110605
Vitamin B12 modulates the transcriptome of the skin microbiota in acne pathogenesis. PMID:26109103
Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea. PMID:26099928
Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development. PMID:26099271
Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison. PMID:26089816
Unusual biology across a group comprising more than 15% of domain Bacteria. PMID:26083755
Prokaryotic Diversity in the Rhizosphere of Organic, Intensive, and Transitional Coffee Farms in Brazil. PMID:26083033
Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development. PMID:26079257
Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods. PMID:26078860
Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities? PMID:26078859
Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes. PMID:26068542
Functional and Structural Succession of Soil Microbial Communities below Decomposing Human Cadavers. PMID:26067226
Comprehensive analysis of Panax ginseng root transcriptomes. PMID:26063328
Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome. PMID:26058375
Acromyrmex Leaf-Cutting Ants Have Simple Gut Microbiota with Nitrogen-Fixing Potential. PMID:26048932
Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference. PMID:26048203
Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities. PMID:26047335
Repbase Update, a database of repetitive elements in eukaryotic genomes. PMID:26045719
Pyrosequencing-Based Assessment of the Microbial Community Structure of Pastoruri Glacier Area (Huascarán National Park, Perú), a Natural Extreme Acidic Environment. PMID:26045157
Horizontal gene transfer and genome evolution in Methanosarcina. PMID:26044078
In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3). PMID:26039074
Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. PMID:26038723
Murine model of chemotherapy-induced extraintestinal pathogenic Escherichia coli translocation. PMID:26034214
Carcass mass has little influence on the structure of gravesoil microbial communities. PMID:26024793
Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing. PMID:26020967
Determining Microeukaryotic Plankton Community around Xiamen Island, Southeast China, Using Illumina MiSeq and PCR-DGGE Techniques. PMID:26020532
Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome. PMID:26007311
Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea. PMID:25983723
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies. PMID:25983555
Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics. PMID:25979752
An Integrated Metagenomics/Metaproteomics Investigation of the Microbial Communities and Enzymes in Solid-state Fermentation of Pu-erh tea. PMID:25974221
Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange. PMID:25972851
Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data. PMID:25969736
Patterns in species persistence and biomass production in soil microcosms recovering from a disturbance reject a neutral hypothesis for bacterial community assembly. PMID:25961300
Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. PMID:25957349
Response of the Rumen Microbiota of Sika Deer (Cervus nippon) Fed Different Concentrations of Tannin Rich Plants. PMID:25955033
Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests. PMID:25954263
Genomic and proteomic evidences unravel the UV-resistome of the poly-extremophile Acinetobacter sp. Ver3. PMID:25954258
Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees. PMID:25953738
Influence of edaphic, climatic, and agronomic factors on the composition and abundance of nitrifying microorganisms in the rhizosphere of commercial olive crops. PMID:25950678
Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA. PMID:25947096
Complex archaea that bridge the gap between prokaryotes and eukaryotes. PMID:25945739
Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. PMID:25941521
Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil. PMID:25934620
Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes. PMID:25932617
Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. PMID:25926821
Phylogenetic placement of metagenomic reads using the minimum evolution principle. PMID:25923672
Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape. PMID:25922908
Comparison of Rock Varnish Bacterial Communities with Surrounding Non-Varnished Rock Surfaces: Taxon-Specific Analysis and Morphological Description. PMID:25921518
Gut dendritic cell activation links an altered colonic microbiome to mucosal and systemic T-cell activation in untreated HIV-1 infection. PMID:25921339
Comparison of the gut microbiota of people in France and Saudi Arabia. PMID:25915742
A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data. PMID:25914684
Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh. PMID:25909974
Differential assemblage of functional units in paddy soil microbiomes. PMID:25898319
NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads. PMID:25888405
Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes. PMID:25888081
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits. PMID:25887588
Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella. PMID:25886817
Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae. PMID:25884386
Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities. PMID:25883589
High-throughput sequencing of nematode communities from total soil DNA extractions. PMID:25880249
Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea. PMID:25879764
The oral and conjunctival microbiotas in cats with and without feline immunodeficiency virus infection. PMID:25879465
The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill. PMID:25869434
RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi. PMID:25852655
Transcriptome analyses to investigate symbiotic relationships between marine protists. PMID:25852650
A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies. PMID:25851097
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. PMID:25848874
Berberine blocks the relapse of Clostridium difficile infection in C57BL/6 mice after standard vancomycin treatment. PMID:25824219
Influence of a non-hospital medical care facility on antimicrobial resistance in wastewater. PMID:25821977
Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons. PMID:25818066
Diversity Profile of Microbes Associated with Anaerobic Sulfur Oxidation in an Upflow Anaerobic Sludge Blanket Reactor Treating Municipal Sewage. PMID:25817585
Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure. PMID:25815185
Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses. PMID:25806087
Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China. PMID:25805214
Spatial distribution of marine airborne bacterial communities. PMID:25800495
The microbial community of a passive biochemical reactor treating arsenic, zinc, and sulfate-rich seepage. PMID:25798439
Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night. PMID:25780242
Global dispersion and local diversification of the methane seep microbiome. PMID:25775520
Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria. PMID:25774156
Isolation of diverse members of the Aquificales from geothermal springs in Tengchong, China. PMID:25774153
A comprehensive analysis of the microbial communities of healthy and diseased marine macroalgae and the detection of known and potential bacterial pathogens. PMID:25759688
Transcriptomics in the tropics: Total RNA-based profiling of Costa Rican bromeliad-associated communities. PMID:25755850
The Gut Microbiota of Workers of the Litter-Feeding Termite Syntermes wheeleri (Termitidae: Syntermitinae): Archaeal, Bacterial, and Fungal Communities. PMID:25749937
High-resolution microbial community succession of microbially induced concrete corrosion in working sanitary manholes. PMID:25748024
Variations of gastric corpus microbiota are associated with early esophageal squamous cell carcinoma and squamous dysplasia. PMID:25743945
The ribosome challenge to the RNA world. PMID:25739364
Seagrass biofilm communities at a naturally CO2 -rich vent. PMID:25727314
pH influences the importance of niche-related and neutral processes in lacustrine bacterioplankton assembly. PMID:25724952
Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L. PMID:25713563
Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs. PMID:25712554
Rumen bacterial diversity of 80 to 110-day-old goats using 16S rRNA sequencing. PMID:25700157
Microbiota disbiosis is associated with colorectal cancer. PMID:25699023
Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis. PMID:25691586
Environmental selection pressures related to iron utilization are involved in the loss of the flavodoxin gene from the plant genome. PMID:25688107
Diversity of Actinobacteria Associated with the Marine Ascidian Eudistoma toealensis. PMID:25678260
Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. PMID:25673291
Microbial communities present in the lower respiratory tract of clinically healthy birds in Pakistan. PMID:25667427
Changing bacterial profile of Sundarbans, the world heritage mangrove: impact of anthropogenic interventions. PMID:25655378
Evaluation of the Performances of Ribosomal Database Project (RDP) Classifier for Taxonomic Assignment of 16S rRNA Metabarcoding Sequences Generated from Illumina-Solexa NGS. PMID:25653722
Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform. PMID:25647581
Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract. PMID:25644850
Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs. PMID:25644524
Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea. PMID:25642221
Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism. PMID:25642220
Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust. PMID:25642212
Identification of a recently active mammalian SINE derived from ribosomal RNA. PMID:25637222
Comparative analysis of the intestinal bacterial and RNA viral communities from sentinel birds placed on selected broiler chicken farms. PMID:25635690
Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. PMID:25633976
Different bacterial populations associated with the roots and rhizosphere of rice incorporate plant-derived carbon. PMID:25616793
Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait). PMID:25601856
Profiling microbial communities in manganese remediation systems treating coal mine drainage. PMID:25595765
Diverse protist grazers select for virulence-related traits in Legionella. PMID:25575308
Pseudomonas isolation and identification: an introduction to the challenges of polyphasic taxonomy. PMID:25574295
Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria. PMID:25566214
Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya. PMID:25566197
Antibiotics in ingested human blood affect the mosquito microbiota and capacity to transmit malaria. PMID:25562286
Does a barcoding gap exist in prokaryotes? Evidences from species delimitation in cyanobacteria. PMID:25561355
Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples. PMID:25549184
Bacterial diversity in the South Adriatic Sea during a strong, deep winter convection year. PMID:25548042
Effects of tigecycline and vancomycin administration on established Clostridium difficile infection. PMID:25547352
Genomic potential for polysaccharide deconstruction in bacteria. PMID:25527556
CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies. PMID:25527546
Group-specific multiplex PCR detection systems for the identification of flying insect prey. PMID:25525799
Effects of light and autochthonous carbon additions on microbial turnover of allochthonous organic carbon and community composition. PMID:25515425
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. PMID:25514533
Diversity, distribution and hydrocarbon biodegradation capabilities of microbial communities in oil-contaminated cyanobacterial mats from a constructed wetland. PMID:25514025
Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c. PMID:25505450
New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus methanoplasma termitum”. PMID:25501486
Growth of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a high-pressure membrane capsule bioreactor. PMID:25501484
Rapid species-level identification of vaginal and oral lactobacilli using MALDI-TOF MS analysis and 16S rDNA sequencing. PMID:25495549
PTPN2 controls differentiation of CD4⁺ T cells and limits intestinal inflammation and intestinal dysbiosis. PMID:25492475
A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome. PMID:25487328
Microbial sulfur transformations in sediments from Subglacial Lake Whillans. PMID:25477865
Early canine plaque biofilms: characterization of key bacterial interactions involved in initial colonization of enamel. PMID:25463050
High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology. PMID:25437800
Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions. PMID:25436772
Séance: reference-based phylogenetic analysis for 18S rRNA studies. PMID:25433763
Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots. PMID:25429293
Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA. PMID:25429287
Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility. PMID:25426290
Antibacterial gene transfer across the tree of life. PMID:25422936
Assessing the accuracy of quantitative molecular microbial profiling. PMID:25421243
Massive regime shifts and high activity of heterotrophic bacteria in an ice-covered lake. PMID:25419654
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development. PMID:25414355
Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis. PMID:25408892
Cyanobacterial Diversity in Biological Soil Crusts along a Precipitation Gradient, Northwest Negev Desert, Israel. PMID:25408227
Association of obesity with serum leptin, adiponectin, and serotonin and gut microflora in beagle dogs. PMID:25407880
Convergent bacterial microbiotas in the fungal agricultural systems of insects. PMID:25406380
Microbial diversity in sugarcane ethanol production in a Brazilian distillery using a culture-independent method. PMID:25404204
Novel biogenic aggregation of moss gemmae on a disappearing African glacier. PMID:25401789
Stable composition of the nano- and picoplankton community during the ocean iron fertilization experiment LOHAFEX. PMID:25401706
Type material in the NCBI Taxonomy Database. PMID:25398905
Phylogenetic analysis of algal symbionts associated with four North American amphibian egg masses. PMID:25393119
Molecular analysis of bacterial diversity in mudflats along the salinity gradient of an acidified tropical Bornean estuary (South East Asia). PMID:25392733
Interspecific and host-related gene expression patterns in nematode-trapping fungi. PMID:25384908
Faecal microbiota of forage-fed horses in New Zealand and the population dynamics of microbial communities following dietary change. PMID:25383707
ESTIMATING BACTERIAL DIVERSITY IN SCIRTOTHRIPS DORSALIS (THYSANOPTERA: THRIPIDAE) VIA NEXT GENERATION SEQUENCING. PMID:25382863
Assessment of quality control approaches for metagenomic data analysis. PMID:25376098
Effect of copper treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis. PMID:25370493
Long-term phenotypic evolution of bacteria. PMID:25363780
Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities. PMID:25361394
Quantitative and functional characterization of the hyper-conserved protein of Prochlorococcus and marine Synechococcus. PMID:25360678
Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents. PMID:25359595
Analytical tools and current challenges in the modern era of neuroepigenomics. PMID:25349914
Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake. PMID:25344237
Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. PMID:25340824
Changes in the bacterial microbiota in gut, blood, and lungs following acute LPS instillation into mice lungs. PMID:25333938
Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage. PMID:25333463
Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis. PMID:25330991
Biogeochemical typing of paddy field by a data-driven approach revealing sub-systems within a complex environment--a pipeline to filtrate, organize and frame massive dataset from multi-omics analyses. PMID:25330259
Systems biology studies of adult paragonimus lung flukes facilitate the identification of immunodominant parasite antigens. PMID:25329661
Specific microbiome changes in a mouse model of parenteral nutrition associated liver injury and intestinal inflammation. PMID:25329595
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. PMID:25325381
Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae. PMID:25301375
Aerobic methanotrophic communities at the Red Sea brine-seawater interface. PMID:25295031
Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms. PMID:25278091
Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally. PMID:25274366
Evaluation of the impact of refrigeration on next generation sequencing-based assessment of the canine and feline fecal microbiota. PMID:25267144
Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe(2+) concentrations. PMID:25228899
Multiple approaches to microbial source tracking in tropical northern Australia. PMID:25224738
Bacterial and archaeal communities in bleached mottles of tropical podzols. PMID:25219446
Draft Genome Sequence of Acinetobacter baumannii Strain ABBL099, a Multidrug-Resistant Clinical Outbreak Isolate with a Novel Multilocus Sequence Type. PMID:25212612
A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PMID:25208077
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. PMID:25203836
Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition. PMID:25195809
The presence of nitrate dramatically changed the predominant microbial community in perchlorate degrading cultures under saline conditions. PMID:25194715
Internal porosity of mineral coating supports microbial activity in rapid sand filters for groundwater treatment. PMID:25192987
Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. PMID:25183372
Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants. PMID:25180967
Illuminating microbial dark matter in meromictic Sakinaw Lake. PMID:25172853
The nasal cavity microbiota of healthy adults. PMID:25143824
Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum. PMID:25141304
Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria. PMID:25136122
Impact of next generation sequencing techniques in food microbiology. PMID:25132799
A tree of cellular life inferred from a genomic census of molecular functions. PMID:25128982
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. PMID:25118885
Phylogenetics and the human microbiome. PMID:25102857
The bacterial communities of Drosophila suzukii collected from undamaged cherries. PMID:25101226
Deep-branching novel lineages and high diversity of haptophytes in the Skagerrak (Norway) uncovered by 454 pyrosequencing. PMID:25099994
MediaDB: a database of microbial growth conditions in defined media. PMID:25098325
An unclassified microorganism: novel pathogen candidate lurking in human airways. PMID:25080337
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer. PMID:25079319
Effect of increasing total solids contents on anaerobic digestion of food waste under mesophilic conditions: performance and microbial characteristics analysis. PMID:25051352
Anaerobic oxidation of methane by sulfate in hypersaline groundwater of the Dead Sea aquifer. PMID:25039851
Conducting a microbiome study. PMID:25036628
Polyploid evolution of the Brassicaceae during the Cenozoic era. PMID:25035408
Alkane Biosynthesis Genes in Cyanobacteria and Their Transcriptional Organization. PMID:25022427
Metabolomics analysis identifies intestinal microbiota-derived biomarkers of colonization resistance in clindamycin-treated mice. PMID:24988418
Determining the culturability of the rumen bacterial microbiome. PMID:24986151
Characterization of bacteriophage communities and CRISPR profiles from dental plaque. PMID:24981669
Farming behaviour of reef fishes increases the prevalence of coral disease associated microbes and black band disease. PMID:24966320
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis. PMID:24965723
Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing. PMID:24965658
Carbadox has both temporary and lasting effects on the swine gut microbiota. PMID:24959163
Microbial community degradation of widely used quaternary ammonium disinfectants. PMID:24951783
Settling down: the genome of Serratia symbiotica from the aphid Cinara tujafilina zooms in on the process of accommodation to a cooperative intracellular life. PMID:24951564
Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing. PMID:24950754
Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin. PMID:24950109
Metagenomic analysis reveals presence of Treponema denticola in a tissue biopsy of the Iceman. PMID:24941044
Community shifts in the surface microbiomes of the coral Porites astreoides with unusual lesions. PMID:24937478
Parasites in algae mass culture. PMID:24936200
Peripheral benzodiazepine receptor/translocator protein global knock-out mice are viable with no effects on steroid hormone biosynthesis. PMID:24936060
Environmental controls on fungal community composition and abundance over 3 years in native and degraded shrublands. PMID:24935902
FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences. PMID:24929426
Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification. PMID:24928876
DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies. PMID:24928874
Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives. PMID:24917519
Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. PMID:24906017
Evidence of natural Wolbachia infections in field populations of Anopheles gambiae. PMID:24905191
Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat. PMID:24904545
Bacterial community assemblages associated with the phyllosphere, dermosphere, and rhizosphere of tree species of the Atlantic forest are host taxon dependent. PMID:24889284
Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community. PMID:24886150
The fecal microbiota of semi-free-ranging wood bison (Bison bison athabascae). PMID:24884592
Role of methylotrophs in the degradation of hydrocarbons during the Deepwater Horizon oil spill. PMID:24865772
River organic matter shapes microbial communities in the sediment of the Rhône prodelta. PMID:24858780
Altered oral viral ecology in association with periodontal disease. PMID:24846382
Handling temperature bursts reaching 464°C: different microbial strategies in the sisters peak hydrothermal chimney. PMID:24837379
Atmospheric N deposition increases bacterial laccase-like multicopper oxidases: implications for organic matter decay. PMID:24837374
Diverse alkane hydroxylase genes in microorganisms and environments. PMID:24829093
Dynamic microbe and molecule networks in a mouse model of colitis-associated colorectal cancer. PMID:24828543
Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes. PMID:24821787
Novel PCR primers for the archaeal phylum Thaumarchaeota designed based on the comparative analysis of 16S rRNA gene sequences. PMID:24805255
The giant ciliate Zoothamnium niveum and its thiotrophic epibiont Candidatus Thiobios zoothamnicoli: a model system to study interspecies cooperation. PMID:24778630
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. PMID:24771669
Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean. PMID:24763372
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale. PMID:24763141
Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure. PMID:24755991
Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota. PMID:24738594
Spatial variations of community structures and methane cycling across a transect of Lei-Gong-Hou mud volcanoes in eastern Taiwan. PMID:24723919
The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci. PMID:24723729
De novo transcriptome hybrid assembly and validation in the European earwig (Dermaptera, Forficula auricularia). PMID:24722757
Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps. PMID:24722631
Comparative metagenomic analysis of human gut microbiome composition using two different bioinformatic pipelines. PMID:24719854
An expanded genomic representation of the phylum cyanobacteria. PMID:24709563
Gene expression of lactobacilli in murine forestomach biofilms. PMID:24702817
Identification and characterization of alternative splicing in parasitic nematode transcriptomes. PMID:24690220
Towards decrypting cryptobiosis--analyzing anhydrobiosis in the tardigrade Milnesium tardigradum using transcriptome sequencing. PMID:24651535
Mycoplasma salivarium as a dominant coloniser of Fanconi anaemia associated oral carcinoma. PMID:24642836
Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). PMID:24637619
Evaluation of the nasal microbiota in slaughter-age pigs and the impact on nasal methicillin-resistant Staphylococcus aureus (MRSA) carriage. PMID:24628871
High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes. PMID:24624126
New insights into Oculina patagonica coral diseases and their associated Vibrio spp. communities. PMID:24621525
Molecular analysis of the microbiota in hard feces from healthy rabbits (Oryctolagus cuniculus) medicated with long term oral meloxicam. PMID:24618207
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples. PMID:24610857
History and impact of RDP: a legacy from Carl Woese to microbiology. PMID:24607969
Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing. PMID:24599149
High-throughput DNA sequencing of the ruminal bacteria from moose (Alces alces) in Vermont, Alaska, and Norway. PMID:24595908
Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis. PMID:24594623
Anaerobic methanotrophic community of a 5346-m-deep vesicomyid clam colony in the Japan Trench. PMID:24593671
Alteration of the murine gastrointestinal microbiota by tigecycline leads to increased susceptibility to Clostridium difficile infection. PMID:24590475
Diversity of rumen bacteria in canadian cervids. PMID:24586961
Diversity and distribution of eukaryotic microbes in and around a brine pool adjacent to the Thuwal cold seeps in the Red Sea. PMID:24575081
Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone. PMID:24550902
Specific microbial attachment to root knot nematodes in suppressive soil. PMID:24532076
Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins. PMID:24523277
Characterization of the 18S rRNA gene for designing universal eukaryote specific primers. PMID:24516555
Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data. PMID:24508279
Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae. PMID:24500618
The candidate phylum Poribacteria by single-cell genomics: new insights into phylogeny, cell-compartmentation, eukaryote-like repeat proteins, and other genomic features. PMID:24498082
MetaMetaDB: a database and analytic system for investigating microbial habitability. PMID:24475242
Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure. PMID:24475066
Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity. PMID:24465484
Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing. PMID:24418497
16S rDNA pyrosequencing analysis of bacterial community in heavy metals polluted soils. PMID:24402360
Host-specificity among abundant and rare taxa in the sponge microbiome. PMID:24401862
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. PMID:24401855
Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. PMID:24375144
Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity. PMID:24359686
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. PMID:24358444
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. PMID:24351936
Methanogens at the top of the world: occurrence and potential activity of methanogens in newly deglaciated soils in high-altitude cold deserts in the Western Himalayas. PMID:24348469
New insights into the phylogeny and molecular classification of nicotinamide mononucleotide deamidases. PMID:24340054
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences. PMID:24335607
Brood ball-mediated transmission of microbiome members in the dung beetle, Onthophagus taurus (Coleoptera: Scarabaeidae). PMID:24223880
Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit. PMID:24219562
Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants. PMID:24204702
POGO-DB--a database of pairwise-comparisons of genomes and conserved orthologous genes. PMID:24198250
Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. PMID:24196325
Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loop. PMID:24144333
Analytical tools and databases for metagenomics in the next-generation sequencing era. PMID:24124405
Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. PMID:24118837
Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand). PMID:24098632
The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. PMID:24098498
Winter-summer succession of unicellular eukaryotes in a meso-eutrophic coastal system. PMID:24081282
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. PMID:24065776
Advancing our understanding of the human microbiome using QIIME. PMID:24060131
SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markers. PMID:24058483
Alignment-free supervised classification of metagenomes by recursive SVM. PMID:24053649
Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem. PMID:24003156
A single betaproteobacterium dominates the microbial community of the crambescidine-containing sponge Crambe crambe. PMID:24002533
The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis. PMID:23985741
The effect of primer choice and short read sequences on the outcome of 16S rRNA gene based diversity studies. PMID:23977026
Primer evaluation and adaption for cost-efficient SYBR Green-based qPCR and its applicability for specific quantification of methanogens. PMID:23918633
A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum. PMID:23908650
The human mycobiome in health and disease. PMID:23899327
Transcriptome characterisation of the ant Formica exsecta with new insights into the evolution of desaturase genes in social hymenoptera. PMID:23874539
Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity. PMID:23872556
Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia. PMID:23853523
A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. PMID:23834245
Oral bacterial community dynamics in paediatric patients with malignancies in relation to chemotherapy-related oral mucositis: a prospective study. PMID:23829394
An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5' UTRs and its implications for eukaryotic gene translation regulation. PMID:23804757
Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP. PMID:23788333
Microbiological characterization of post-eruption "snowblower" vents at Axial Seamount, Juan de Fuca Ridge. PMID:23785361
Viral categorization and discovery in human circulation by transcriptome sequencing. PMID:23764402
The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats. PMID:23720658
Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia. PMID:23717306
Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions. PMID:23700443
Topographic diversity of fungal and bacterial communities in human skin. PMID:23698366
Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs. PMID:23698349
Insights into the structure and metabolic function of microbes that shape pelagic iron-rich aggregates ("iron snow"). PMID:23645202
Investigation of the effect of type 2 diabetes mellitus on subgingival plaque microbiota by high-throughput 16S rDNA pyrosequencing. PMID:23613868
Mobile elements in a single-filament orange Guaymas Basin Beggiatoa ("Candidatus Maribeggiatoa") sp. draft genome: evidence for genetic exchange with cyanobacteria. PMID:23603674
Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study. PMID:23384395
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks PubMed citations: 766.

766 articles citing: The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

Diversity and Selection of Surface Marine Microbiomes in the Atlantic-Influenced Arctic. PMID:35910621
Community structure of coral microbiomes is dependent on host morphology. PMID:35902906
Meta-Prism 2.0: Enabling algorithm and web server for ultra-fast, memory-efficient, and accurate analysis among millions of microbial community samples. PMID:35902093
Association of key species of vaginal bacteria of recurrent bacterial vaginosis patients before and after oral metronidazole therapy with short- and long-term clinical outcomes. PMID:35901180
Using metabarcoding and droplet digital PCR to investigate drivers of historical shifts in cyanobacteria from six contrasting lakes. PMID:35896561
Characterization of the Soil Bacterial Community from Selected Boxwood Gardens across the United States. PMID:35893572
Phylogenomic Analyses and Molecular Signatures Elucidating the Evolutionary Relationships amongst the Chlorobia and Ignavibacteria Species: Robust Demarcation of Two Family-Level Clades within the Order Chlorobiales and Proposal for the Family Chloroherpetonaceae fam. nov. PMID:35889031
Abundance and Niche Differentiation of Comammox in the Sludges of Wastewater Treatment Plants That Use the Anaerobic-Anoxic-Aerobic Process. PMID:35888046
Oceanospirillales containing the DMSP lyase DddD are key utilisers of carbon from DMSP in coastal seawater. PMID:35883169
Low abundance members of the gut microbiome exhibit high immunogenicity. PMID:35881003
Hydrolyzed chicken liver used as single source of animal protein in diet and its effect on cytokines, immunoglobulins, and fecal microbiota profile of adult dogs. PMID:35867776
Differential Overlap in Human and Animal Fecal Microbiomes and Resistomes in Rural versus Urban Bangladesh. PMID:35862660
Cancer type classification using plasma cell-free RNAs derived from human and microbes. PMID:35816095
Effects of Different Roughage Diets on Fattening Performance, Meat Quality, Fatty Acid Composition, and Rumen Microbe in Steers. PMID:35799586
The Microbiological Drivers of Temporally Dynamic Dimethylsulfoniopropionate Cycling Processes in Australian Coastal Shelf Waters. PMID:35783424
The coral pathogen Vibrio coralliilyticus kills non-pathogenic holobiont competitors by triggering prophage induction. PMID:35773344
S097: a single, peri-operative antibiotic can persistently alter the post-operative gut microbiome after Roux-en-Y gastric bypass. PMID:35768736
Host lung microbiota promotes malaria-associated acute respiratory distress syndrome. PMID:35768411
Genetic disruption of Arabidopsis secondary metabolite synthesis leads to microbiome-mediated modulation of nematode invasion. PMID:35760884
Lipid Biomarkers From Microbial Mats on the McMurdo Ice Shelf, Antarctica: Signatures for Life in the Cryosphere. PMID:35756013
Gut Steroids and Microbiota: Effect of Gonadectomy and Sex. PMID:35740892
Gut Microbiome Signatures in the Progression of Hepatitis B Virus-Induced Liver Disease. PMID:35733959
Evaluating hierarchical machine learning approaches to classify biological databases. PMID:35724625
Spatio-temporal variation in the root-associated microbiota of orchard-grown apple trees. PMID:35715810
The Effect of Syringic Acid and Phenoxy Herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) on Soil, Rhizosphere, and Plant Endosphere Microbiome. PMID:35712561
Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria. PMID:35704763
Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants. PMID:35695455
Organohalide respiration potential in marine sediments from Aarhus Bay. PMID:35689665
Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom. PMID:35688919
Nitrogen Removal Capacity of Microbial Communities Developing in Compost- and Woodchip-Based Multipurpose Reactive Barriers for Aquifer Recharge With Wastewater. PMID:35685927
Rhizosphere Soil Microbial Community Under Ice in a High-Latitude Wetland: Different Community Assembly Processes Shape Patterns of Rare and Abundant Microbes. PMID:35677902
High-throughput amplicon sequencing datasets of the metacommunity DNA of the gut microbiota of Zebrafish Danio rerio fed diets with differential quantities of protein and fat contents. PMID:35669004
Microbial Community Analysis and Food Safety Practice Survey-Based Hazard Identification and Risk Assessment for Controlled Environment Hydroponic/Aquaponic Farming Systems. PMID:35663856
Short chain fatty acids-producing and mucin-degrading intestinal bacteria predict the progression of early Parkinson's disease. PMID:35650236
Vaginal microbiota signatures in healthy and purulent vulvar discharge sows. PMID:35650232
Microbial community and antimicrobial resistance in fecal samples from wild and domestic ruminants in Maiella National Park, Italy. PMID:35647256
The lung microbiome in HIV-positive patients with active pulmonary tuberculosis. PMID:35643931
Composition and Functional Potential of the Human Mammary Microbiota Prior to and Following Breast Tumor Diagnosis. PMID:35642922
Development of gut microbiota during the first 2 years of life. PMID:35641542
Acidified drinking water attenuates motor deficits and brain pathology in a mouse model of a childhood neurodegenerative disorder. PMID:35637265
Effect of Killed PRRSV Vaccine on Gut Microbiota Diversity in Pigs. PMID:35632822
Fecal Microbiota Signatures Are Not Consistently Related to Symptom Severity in Irritable Bowel Syndrome. PMID:35624331
Shifts in gut microbiome across five decades of repeated guppy translocations in Trinidadian streams. PMID:35611540
A high-fibre personalised dietary advice given via a web tool reduces constipation complaints in adults. PMID:35573462
Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. PMID:35536036
Differential Effects of Natural Grazing and Feedlot Feeding on Yak Fecal Microbiota. PMID:35529830
Bacterial microbiomes from mucus and breath of southern resident killer whales (Orcinus orca). PMID:35492424
Insights into the microbiome assembly during different growth stages and storage of strawberry plants. PMID:35484554
Bacterial Dynamics and Their Influence on the Biogeochemical Cycles in a Subtropical Hypereutrophic Lake During the Rainy Season. PMID:35479621
Comparison of Actinobacteria communities from human-impacted and pristine karst caves. PMID:35478281
Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic. PMID:35477720
Sputum Metabolites Associated with Nontuberculous Mycobacterial Infection in Cystic Fibrosis. PMID:35477313
Bacteria, Protists, and Fungi May Hold Clues of Seamount Impact on Diversity and Connectivity of Deep-Sea Pelagic Communities. PMID:35464911
Enrichment of Anaerobic Microbial Communities from Midgut and Hindgut of Sun Beetle Larvae (Pachnoda marginata) on Wheat Straw: Effect of Inoculum Preparation. PMID:35456811
Ocular Microbiome in a Group of Clinically Healthy Horses. PMID:35454190
Microbiome Analysis via OTU and ASV-Based Pipelines-A Comparative Interpretation of Ecological Data in WWTP Systems. PMID:35447706
Feces DNA analyses track the rehabilitation of a free-ranging beluga whale. PMID:35440734
Diversity and distribution of sulfur metabolic genes in the human gut microbiome and their association with colorectal cancer. PMID:35440042
Pathogen-Mediated Assembly of Plant-Beneficial Bacteria to Alleviate Fusarium Wilt in Pseudostellaria heterophylla. PMID:35432244
Diversity and structure of sparids external microbiota (Teleostei) and its link with monogenean ectoparasites. PMID:35418308
Sea Cucumber Body Vesicular Syndrome Is Driven by the Pond Water Microbiome via an Altered Gut Microbiota. PMID:35418244
Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties. PMID:35416691
Biochar Amendment and Nitrogen Fertilizer Contribute to the Changes in Soil Properties and Microbial Communities in a Paddy Field. PMID:35401466
Fiber Composition in Sows' Diets Modifies Clostridioides difficile Colonization in Their Offspring. PMID:35397071
Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome. PMID:35365748
Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice. PMID:35365681
Association of gut microbiota with glycaemic traits and incident type 2 diabetes, and modulation by habitual diet: a population-based longitudinal cohort study in Chinese adults. PMID:35357559
Alterations in common marmoset gut microbiome associated with duodenal strictures. PMID:35347206
Environmental Factors Affecting the Community of Methane-oxidizing Bacteria. PMID:35342121
High-Rate Sulfate Removal Coupled to Elemental Sulfur Production in Mining Process Waters Based on Membrane-Biofilm Technology. PMID:35340841
Optimization of the 16S rRNA sequencing analysis pipeline for studying in vitro communities of gut commensals. PMID:35340431
Prophylactic Addition of Glucose Suppresses Cyanobacterial Abundance in Lake Water. PMID:35330137
The gut microbiome of exudivorous marmosets in the wild and captivity. PMID:35322053
Dietary Administration of L-Carnitine During the Fattening Period of Early Feed Restricted Lambs Modifies Ruminal Fermentation but Does Not Improve Feed Efficiency. PMID:35309073
Population Differences and Host Species Predict Variation in the Diversity of Host-Associated Microbes in Hydra. PMID:35308397
Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology. PMID:35297758
Analysis of gut microbiome profiles in common marmosets (Callithrix jacchus) in health and intestinal disease. PMID:35292670
Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka. PMID:35285678
Microbial Biofilms Along a Geochemical Gradient at the Shallow-Water Hydrothermal System of Vulcano Island, Mediterranean Sea. PMID:35283854
Gut Microbiome Alterations following Postnatal Iron Supplementation Depend on Iron Form and Persist into Adulthood. PMID:35276770
Selenium supplementation influences mice testicular selenoproteins driven by gut microbiota. PMID:35273298
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. PMID:35272716
The microbiota restrains neurodegenerative microglia in a model of amyotrophic lateral sclerosis. PMID:35272713
Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA. PMID:35265781
Immunogenetic variation shapes the gut microbiome in a natural vertebrate population. PMID:35256003
Gut microbiome modifications over time when removing in-feed antibiotics from the prophylaxis of post-weaning diarrhea in piglets. PMID:35255081
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease. PMID:35251123
Rap1 prevents colitogenic Th17 cell expansion and facilitates Treg cell differentiation and distal TCR signaling. PMID:35246619
Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges. PMID:35233042
Local Habitat Filtering Shapes Microbial Community Structure in Four Closely Spaced Lakes in the High Arctic. PMID:35222324
Diatom Biogeography, Temporal Dynamics, and Links to Bacterioplankton across Seven Oceanographic Time-Series Sites Spanning the Australian Continent. PMID:35208793
Effects of the Protein Concentration and Quality in a Canned Diet on the Fecal Microbiota of Healthy Adult Cats. PMID:35208180
Salinity Gradient Controls Microbial Community Structure and Assembly in Coastal Solar Salterns. PMID:35205428
Unraveling Gut Microbiota Signatures Associated with PPARD and PARGC1A Genetic Polymorphisms in a Healthy Population. PMID:35205333
Could Dietary Supplementation with Different Sources of N-3 Polyunsaturated Fatty Acids Modify the Rabbit Gut Microbiota? PMID:35203829
The lung microbiome regulates brain autoimmunity. PMID:35197636
Host microbiome responses to the Snake Fungal Disease pathogen (Ophidiomyces ophidiicola) are driven by changes in microbial richness. PMID:35197501
Gut microbiota and plasma cytokine levels in patients with attention-deficit/hyperactivity disorder. PMID:35197458
Differences in the composition and predicted functions of the intestinal microbiome of obese and normal weight adult dogs. PMID:35190784
Effect of water management on microbial diversity and composition in an Italian rice field system. PMID:35170720
Comparative analysis of microbial communities from different full-scale haloalkaline biodesulfurization systems. PMID:35147744
Sodium molybdate does not inhibit sulfate-reducing bacteria but increases shell growth in the Pacific oyster Magallana gigas. PMID:35139090
Colonic Microbial Abundances Predict Adenoma Formers. PMID:35129506
Fecal and soil microbiota composition of gardening and non-gardening families. PMID:35102166
Mapping the Green-Lipped Mussel (Perna canaliculus) Microbiome: A Multi-Tissue Analysis of Bacterial and Fungal Diversity. PMID:35091849
The Effect of Salmon Food-Derived DOM and Glacial Melting on Activity and Diversity of Free-Living Bacterioplankton in Chilean Patagonian Fjords. PMID:35087485
Changes in the stool and oropharyngeal microbiome in obsessive-compulsive disorder. PMID:35087123
Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria. PMID:35074914
Inverse Potts model improves accuracy of phylogenetic profiling. PMID:35060594
The Impact of Pre- and Probiotic Product Combinations on Ex vivo Growth of Avian Pathogenic Escherichia coli and Salmonella Enteritidis. PMID:35056569
Comparison of ready-to-eat "organic" antimicrobials, sodium bisulfate, and sodium lactate, on Listeria monocytogenes and the indigenous microbiome of organic uncured beef frankfurters stored under refrigeration for three weeks. PMID:35051217
Evaluation of Bacterial Diversity and Evolutionary Dynamics of Gut Bifidobacterium longum Isolates Obtained from Older Individuals in Hubei Province, China. PMID:35044201
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils. PMID:35040702
Modulation of Atlantic salmon (Salmo salar) gut microbiota composition and predicted metabolic capacity by feeding diets with processed black soldier fly (Hermetia illucens) larvae meals and fractions. PMID:35033208
Trophic and symbiotic links between obligate-glacier water bears (Tardigrada) and cryoconite microorganisms. PMID:35020747
Contrasting Community Assembly Mechanisms Underlie Similar Biogeographic Patterns of Surface Microbiota in the Tropical North Pacific Ocean. PMID:35019678
Effects of Dietary Cereal and Protein Source on Fiber Digestibility, Composition, and Metabolic Activity of the Intestinal Microbiota in Weaner Piglets. PMID:35011215
Microbiome diversity and reproductive incompatibility induced by the prevalent endosymbiont Arsenophonus in two species of African cassava Bemisia tabaci whiteflies. PMID:35003655
Dynamic and Assembly of Benthic Bacterial Community in an Industrial-Scale In-Pond Raceway Recirculating Culture System. PMID:35003028
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea. PMID:34986141
Characterization of captive and wild 13-lined ground squirrel cecal microbiotas using Illumina-based sequencing. PMID:34980290
Cold Acclimation in Brachypodium Is Accompanied by Changes in Above-Ground Bacterial and Fungal Communities. PMID:34961295
tascCODA: Bayesian Tree-Aggregated Analysis of Compositional Amplicon and Single-Cell Data. PMID:34950190
Host Identity and Geographic Location Significantly Affect Gastrointestinal Microbial Richness and Diversity in Western Lowland Gorillas (Gorilla gorilla gorilla) under Human Care. PMID:34944176
Assessment of Changes in the Oral Microbiome That Occur in Dogs with Periodontal Disease. PMID:34941818
Understanding of the Site-Specific Microbial Patterns towards Accurate Identification for Patients with Diarrhea-Predominant Irritable Bowel Syndrome. PMID:34937163
Honey Bee Larval and Adult Microbiome Life Stages Are Effectively Decoupled with Vertical Transmission Overcoming Early Life Perturbations. PMID:34933445
Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species. PMID:34932575
Sex disparate gut microbiome and metabolome perturbations precede disease progression in a mouse model of Rett syndrome. PMID:34916612
Novel high-resolution targeted sequencing of the cervicovaginal microbiome. PMID:34915863
House fly larval grazing alters dairy cattle manure microbial communities. PMID:34911456
You are more than what you eat: potentially adaptive enrichment of microbiome functions across bat dietary niches. PMID:34906258
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol. PMID:34897429
Lactiplantibacillusplantarum ATG-K2 Exerts an Anti-Obesity Effect in High-Fat Diet-Induced Obese Mice by Modulating the Gut Microbiome. PMID:34884471
Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil. PMID:34879068
Grapevine wood microbiome analysis identifies key fungal pathogens and potential interactions with the bacterial community implicated in grapevine trunk disease appearance. PMID:34863281
Coral reef biofilm bacterial diversity and successional trajectories are structured by reef benthic organisms and shift under chronic nutrient enrichment. PMID:34853316
The impact of bacterial diversity on resistance to biocides in oilfields. PMID:34845279
Diversity of Lactic Acid Bacteria Involved in the Fermentation of Awa-bancha. PMID:34840198
Colonic Medium-Chain Fatty Acids Act as a Source of Energy and for Colon Maintenance but Are Not Utilized to Acylate Ghrelin. PMID:34836064
An Insight into Vaginal Microbiome Techniques. PMID:34833105
Microbial Surface Biofilm Responds to the Growth-Reproduction-Senescence Cycle of the Dominant Coral Reef Macroalgae Sargassum spp. PMID:34833075
Improved quantitative microbiome profiling for environmental antibiotic resistance surveillance. PMID:34794510
Fifteen shades of clay: distinct microbial community profiles obtained from bentonite samples by cultivation and direct nucleic acid extraction. PMID:34785699
HashSeq: a Simple, Scalable, and Conservative De Novo Variant Caller for 16S rRNA Gene Data Sets. PMID:34751586
Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry. PMID:34745051
The Depletion of Carbohydrate Metabolic Genes in the Gut Microbiome Contributes to the Transition From Central Obesity to Type 2 Diabetes. PMID:34745012
Naturally occurring fire coral clones demonstrate a genetic and environmental basis of microbiome composition. PMID:34737272
fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing. PMID:34733246
Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria. PMID:34730808
Assessment of the plasmidome of an extremophilic microbial community from the Diamante Lake, Argentina. PMID:34728656
The microbiome of a shell mound: ancient anthropogenic waste as a source of Streptomyces degrading recalcitrant polysaccharides. PMID:34719741
Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral-killing sponge, Terpios hoshinota. PMID:34708512
The soil microbiomics of intact, degraded and partially-restored semi-arid succulent thicket (Albany Subtropical Thicket). PMID:34707927
Characterization of Frond and Flower Development and Identification of FT and FD Genes From Duckweed Lemna aequinoctialis Nd. PMID:34707626
Contribution of Maternal and Paternal Transmission to Bacterial Colonization in Nematostella vectensis. PMID:34707584
Patterns of syntrophic interactions in methanogenic conversion of propionate. PMID:34694448
Microbial contribution to the caloric restriction-triggered regulation of the intestinal levels of glutathione transferases, taurine, and bile acid. PMID:34693866
Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters. PMID:34686760
Impact of the gut microecology on Campylobacter presence revealed by comparisons of the gut microbiota from chickens raised on litter or in individual cages. PMID:34686130
Alleviation Effects of Bifidobacterium animalis subsp. lactis XLTG11 on Dextran Sulfate Sodium-Induced Colitis in Mice. PMID:34683415
Alleviative Effects of Exopolysaccharide Produced by Lactobacillus helveticus KLDS1.8701 on Dextran Sulfate Sodium-Induced Colitis in Mice. PMID:34683406
Machine Learning Predicts the Presence of 2,4,6-Trinitrotoluene in Sediments of a Baltic Sea Munitions Dumpsite Using Microbial Community Compositions. PMID:34659134
Footwear microclimate and its effects on the microbial community of the plantar skin. PMID:34645918
Bacterial community dynamics during embryonic development of the little skate (Leucoraja erinacea). PMID:34645528
Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities. PMID:34641782
Transmission of Bacterial Symbionts With and Without Genome Erosion Between a Beetle Host and the Plant Environment. PMID:34630349
Inoculation of mother's own milk could personalize pasteurized donor human milk used for feeding preterm infants. PMID:34627277
A cross-sectional study of the nasal and fecal microbiota of sows from different health status within six commercial swine farms. PMID:34616608
Two ST11 Klebsiella pneumoniae strains exacerbate colorectal tumorigenesis in a colitis-associated mouse model. PMID:34606408
Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics. PMID:34603853
Seasonal Dynamics of Epiphytic Microbial Communities on Marine Macrophyte Surfaces. PMID:34603223
Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening. PMID:34599256
Gut Microbiome: A Potential Indicator for Differential Diagnosis of Major Depressive Disorder and General Anxiety Disorder. PMID:34589003
Ecogenomics Reveals Microbial Metabolic Networks in a Psychrophilic Methanogenic Bioreactor Treating Soy Sauce Production Wastewater. PMID:34588388
Effect of Oxygen Contamination on Propionate and Caproate Formation in Anaerobic Fermentation. PMID:34568301
Chronic consumption of sweeteners in mice and its effect on the immune system and the small intestine microbiota. PMID:34559497
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network. PMID:34550967
Deciphering Succession and Assembly Patterns of Microbial Communities in a Two-Stage Solid-State Fermentation System. PMID:34549993
Local versus site-level effects of algae on coral microbial communities. PMID:34540243
Impact of building closures during the COVID-19 pandemic on Legionella infection risks. PMID:34537274
The digestive and reproductive tract microbiotas and their association with body weight in laying hens. PMID:34534851
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. PMID:34520557
Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World. PMID:34512595
Geographical separation and ethnic origin influence the human gut microbial composition: a meta-analysis from a Malaysian perspective. PMID:34463609
Patterns of protist distribution and diversification in alpine lakes across Europe. PMID:34459549
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance. PMID:34459542
Aryl Hydrocarbon Receptor Deficiency in Intestinal Epithelial Cells Aggravates Alcohol-Related Liver Disease. PMID:34454169
Characterizing the Cattle Gut Microbiome in Farms with a High and Low Prevalence of Shiga Toxin Producing Escherichia coli. PMID:34442815
Colorectal Cancer Stage-Specific Fecal Bacterial Community Fingerprinting of the Taiwanese Population and Underpinning of Potential Taxonomic Biomarkers. PMID:34442626
Native Yeasts and Lactic Acid Bacteria Isolated from Spontaneous Fermentation of Seven Grape Cultivars from the Maule Region (Chile). PMID:34441515
Late Gestation Maternal Feed Restriction Decreases Microbial Diversity of the Placenta While Mineral Supplementation Improves Richness of the Fetal Gut Microbiome in Cattle. PMID:34438676
Do initial concentration and activated sludge seasonality affect pharmaceutical biotransformation rate constants? PMID:34423412
A Combined Digital PCR and Next Generation DNA-Sequencing Based Approach for Tracking Nearshore Pollutant Dynamics Along the Southwest United States/Mexico Border. PMID:34421839
Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico. PMID:34406855
Characterization of the virome associated with Haemagogus mosquitoes in Trinidad, West Indies. PMID:34400676
Characterization of the fecal microbiota of sows and their offspring from German commercial pig farms. PMID:34398927
Lactobacillus plantarum HAC01 Supplementation Improves Glycemic Control in Prediabetic Subjects: A Randomized, Double-Blind, Placebo-Controlled Trial. PMID:34371847
The Mechanism Underlying of Long-Term Stable Indigo Reduction State in Indigo Fermentation Using Sukumo (Composted Polygonum tinctorium Leaves). PMID:34367099
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms. PMID:34361929
Using Plate-Wash PCR and High-Throughput Sequencing to Measure Cultivated Diversity for Natural Product Discovery Efforts. PMID:34354680
An Exploratory Study for the Association of Gut Microbiome with Efficacy of Immune Checkpoint Inhibitor in Patients with Hepatocellular Carcinoma. PMID:34336726
Influence of Filter Pore Size on Composition and Relative Abundance of Bacterial Communities and Select Host-Specific MST Markers in Coastal Waters of Southern Lake Michigan. PMID:34335496
Data analysis workflow for the detection of canine vector-borne pathogens using 16 S rRNA Next-Generation Sequencing. PMID:34332568
A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease. PMID:34313538
Feeding Pre-weaned Calves With Waste Milk Containing Antibiotic Residues Is Related to a Higher Incidence of Diarrhea and Alterations in the Fecal Microbiota. PMID:34307516
Oral Bacterial Microbiomes in Association with Potential Prediabetes Using Different Criteria of Diagnosis. PMID:34299886
Forming Consensus To Advance Urobiome Research. PMID:34282932
Synergistic effects of exercise and catalase overexpression on gut microbiome. PMID:34270161
Prospective correlation between the patient microbiome with response to and development of immune-mediated adverse effects to immunotherapy in lung cancer. PMID:34256732
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms. PMID:34249520
Evaluating extraction methods to study canine urine microbiota. PMID:34242284
Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal. PMID:34225812
Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation. PMID:34220732
Extremophiles in Soil Communities of Former Copper Mining Sites of the East Harz Region (Germany) Reflected by Re-Analyzed 16S rRNA Data. PMID:34209398
Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures. PMID:34203511
A Single Dose of Nitrate Increases Resilience Against Acidification Derived From Sugar Fermentation by the Oral Microbiome. PMID:34195102
Kmerator Suite: design of specific k-mer signatures and automatic metadata discovery in large RNA-seq datasets. PMID:34179780
Leveraging 16S rRNA Microbiome Sequencing Data to Identify Bacterial Signatures for Irritable Bowel Syndrome. PMID:34178718
Remodeling of the maternal gut microbiome during pregnancy is shaped by parity. PMID:34176489
Human encroachment into wildlife gut microbiomes. PMID:34172822
Impact of Antibiotic-Induced Depletion of Gut Microbiota and Selenium Supplementation on Plasma Selenoproteome and Metal Homeostasis in a Mice Model. PMID:34171188
Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus). PMID:34168170
Sex- and age-specific variation of gut microbiota in Brandt's voles. PMID:34164232
Characterising Post-mortem Bacterial Translocation Under Clinical Conditions Using 16S rRNA Gene Sequencing in Two Animal Models. PMID:34135873
Effect of concentration and hydraulic reaction time on the removal of pharmaceutical compounds in a membrane bioreactor inoculated with activated sludge. PMID:34132479
The largest moss carpet transplant in Antarctica and its bryosphere cryptic biodiversity. PMID:34117569
Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs. PMID:34116726
Selective DNA and Protein Isolation From Marine Macrophyte Surfaces. PMID:34108951
Degradation of the Indospicine Toxin from Indigofera spicata by a Mixed Population of Rumen Bacteria. PMID:34071579
Effect of You-Gui-Wan on House Dust Mite-Induced Mouse Allergic Asthma via Regulating Amino Acid Metabolic Disorder and Gut Dysbiosis. PMID:34070764
Comparative Analysis of Milk Microbiomes and Their Association with Bovine Mastitis in Two Farms in Central Russia. PMID:34068998
Extraction and characterisation of arabinoxylan from brewers spent grain and investigation of microbiome modulation potential. PMID:34057578
Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing. PMID:34045546
Consequences of herbal mixture supplementation on milk performance, ruminal fermentation, and bacterial diversity in water buffaloes. PMID:34040891
Diverse and active archaea communities occur in non-disinfected drinking water systems-Less activity revealed in disinfected and hot water systems. PMID:34027378
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. PMID:34020714
Microbial Diversity of Temperate Pine and Native Forest Soils Profiled by 16S rRNA Gene Amplicon Sequencing. PMID:34016677
Profiling of tumour-associated microbiota in human hepatocellular carcinoma. PMID:34012007
Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila. PMID:34006653
Biliary Microbiota in Choledocholithiasis and Correlation With Duodenal Microbiota. PMID:33996618
Prokaryotic diversity and biogeochemical characteristics of field living and laboratory cultured stromatolites from the hypersaline Laguna Interna, Salar de Atacama (Chile). PMID:33993356
The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression. PMID:33987532
Age-associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism. PMID:33970544
Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast. PMID:33967978
The Bacterial Community Diversity of Bathroom Hot Tap Water Was Significantly Lower Than That of Cold Tap and Shower Water. PMID:33967975
The commensal consortium of the gut microbiome is associated with favorable responses to anti-programmed death protein 1 (PD-1) therapy in thoracic neoplasms. PMID:33960176
Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast. PMID:33953214
Sequential Modulation of the Equine Fecal Microbiota and Fibrolytic Capacity Following Two Consecutive Abrupt Dietary Changes and Bacterial Supplementation. PMID:33946811
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. PMID:33944776
Metagenomic Analysis of Microbial Composition Revealed Cross-Contamination Pathway of Bacteria at a Foodservice Facility. PMID:33912146
Hydrogen as a Co-electron Donor for Chain Elongation With Complex Communities. PMID:33898406
Understanding the Shift in the Microbiome of Composts That Are Optimized for a Better Fit-for-Purpose in Growing Media. PMID:33897654
Non-small cell lung cancer microbiota characterization: Prevalence of enteric and potentially pathogenic bacteria in cancer tissues. PMID:33891617
Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy. PMID:33859339
Longitudinal analysis of sinus microbiota post endoscopic surgery in patients with cystic fibrosis and chronic rhinosinusitis: a pilot study. PMID:33849523
Multidimensional Approach for Investigating the Effects of an Antibiotic-Probiotic Combination on the Equine Hindgut Ecosystem and Microbial Fibrolysis. PMID:33841371
Genomic Metrics Applied to Rhizobiales (Hyphomicrobiales): Species Reclassification, Identification of Unauthentic Genomes and False Type Strains. PMID:33841347
Global Diversity and Biogeography of the Zostera marina Mycobiome. PMID:33837008
EzMAP: Easy Microbiome Analysis Platform. PMID:33827413
Prokaryotic taxonomy and nomenclature in the age of big sequence data. PMID:33824426
Temporal oral microbiome changes with brushing in children with cleft lip and palate. PMID:33817376
Pediococcus acidilactici Strains Improve Constipation Symptoms and Regulate Intestinal Flora in Mice. PMID:33816357
Rhizosphere Microbiomes in a Historical Maize-Soybean Rotation System Respond to Host Species and Nitrogen Fertilization at the Genus and Subgenus Levels. PMID:33811028
Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment. PMID:33810449
Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens. PMID:33809351
Differences in the Microbial Composition of Hemodialysis Patients Treated with and without β-Blockers. PMID:33809103
Bacterial and Archaeal Structural Diversity in Several Biodeterioration Patterns on the Limestone Walls of the Old Cathedral of Coimbra. PMID:33808176
Bacterial community structure alterations within the colorectal cancer gut microbiome. PMID:33789570
Fasting alters the gut microbiome reducing blood pressure and body weight in metabolic syndrome patients. PMID:33785752
The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures. PMID:33782436
Evaluation of Established Methods for DNA Extraction and Primer Pairs Targeting 16S rRNA Gene for Bacterial Microbiota Profiling of Olive Xylem Sap. PMID:33777075
Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria. PMID:33776974
Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson's disease individuals. PMID:33771222
Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy Season. PMID:33767675
Genome Mining and Evolutionary Analysis Reveal Diverse Type III Polyketide Synthase Pathways in Cyanobacteria. PMID:33739400
Motilimonas cestriensis sp. nov., isolated from an inland brine spring in Northern England. PMID:33739249
Benchmarking DNA isolation kits used in analyses of the urinary microbiome. PMID:33731788
Bacterial diversity patterns of desert dunes in the northeastern Qinghai-Tibet Plateau, China. PMID:33730221
Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures. PMID:33727403
Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life. PMID:33723382
Effects of calcium level and source, formic acid, and phytase on phytate degradation and the microbiota in the digestive tract of broiler chickens. PMID:33722307
Predicting spatial patterns of soil bacteria under current and future environmental conditions. PMID:33712699
Assessment of bacteriophage vB_Pd_PDCC-1 on bacterial dynamics during ontogenetic development of the longfin yellowtail (Seriola rivoliana). PMID:33710359
Microbiota Detection Patterns Correlate With Presence and Severity of Barrett's Esophagus. PMID:33708643
Characterization of biliary microbiota dysbiosis in extrahepatic cholangiocarcinoma. PMID:33690612
Different co-occurring bacteria enhance or decrease the growth of the microalga Nannochloropsis sp. CCAP211/78. PMID:33683803
Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities. PMID:33664723
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals. PMID:33650801
Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics. PMID:33621265
Relative genetic diversity of the rare and endangered Agave shawii ssp. shawii and associated soil microbes within a southern California ecological preserve. PMID:33614006
Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra. PMID:33613495
Neonicotinoid Seed Treatments Have Significant Non-target Effects on Phyllosphere and Soil Bacterial Communities. PMID:33584586
Localization of bacterial communities within gut compartments across Cephalotes turtle ants. PMID:33579688
The effect of acute moderate-intensity exercise on the serum and fecal metabolomes and the gut microbiota of cross-country endurance athletes. PMID:33574413
Effects of Mesobiliverdin IXα-Enriched Microalgae Feed on Gut Health and Microbiota of Broilers. PMID:33553275
Patterns of Relative and Quantitative Abundances of Marine Bacteria in Surface Waters of the Subtropical Northwest Pacific Ocean Estimated With High-Throughput Quantification Sequencing. PMID:33552014
Development of a robust protocol for the characterization of the pulmonary microbiota. PMID:33547364
The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning. PMID:33542373
Novel Ex Vivo Model to Examine the Mechanism and Relationship of Esophageal Microbiota and Disease. PMID:33540531
Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture. PMID:33531396
metaXplor: an interactive viral and microbial metagenomic data manager. PMID:33527143
The Alteration of Intestinal Microbiota Profile and Immune Response in Epinephelus coioides during Pathogen Infection. PMID:33525589
Anaerococcus urinimassiliensis sp. nov., a new bacterium isolated from human urine. PMID:33514860
Microbial community shifts reflect losses of native soil carbon with pyrogenic and fresh organic matter additions and are greatest in low-carbon soils. PMID:33514520
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. PMID:33510474
Characterization of Microbial Dynamics and Volatile Metabolome Changes During Fermentation of Chambourcin Hybrid Grapes From Two Pennsylvania Regions. PMID:33505380
Changes in the faecal microbiome of pied tamarins (Saguinus bicolor) associated with chronic, recurrent diarrhoea and weight loss. PMID:33500002
The microbiota of the surface, dermis and subcutaneous tissue of dog skin. PMID:33499979
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements. PMID:33499961
Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala. PMID:33499955
Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond Earth. PMID:33487169
Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants. PMID:33479274
Clostridioides difficile exploits toxin-mediated inflammation to alter the host nutritional landscape and exclude competitors from the gut microbiota. PMID:33469019
Infection trains the host for microbiota-enhanced resistance to pathogens. PMID:33453153
Contamination Sources and Transmission Routes for Campylobacter on (Mixed) Broiler Farms in Belgium, and Comparison of the Gut Microbiota of Flocks Colonized and Uncolonized with Campylobacter. PMID:33451094
The bacterial community of the lone star tick (Amblyomma americanum). PMID:33446262
Multiple co-occurring and persistently detected cyanotoxins and associated cyanobacteria in adjacent California lakes. PMID:33428970
Comparative Gut Microbiome Differences between Ferric Citrate and Calcium Carbonate Phosphate Binders in Patients with End-Stage Kidney Disease. PMID:33419265
Grapevine Microbiota Reflect Diversity among Compartments and Complex Interactions within and among Root and Shoot Systems. PMID:33401756
Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics. PMID:33396691
Microbiota Features Associated With a High-Fat/Low-Fiber Diet in Healthy Adults. PMID:33392236
Effect of Temperature on Acetate Mineralization Kinetics and Microbial Community Composition in a Hydrocarbon-Affected Microbial Community During a Shift From Oxic to Sulfidogenic Conditions. PMID:33391229
Cyanobacterial Mats in Calcite-Precipitating Serpentinite-Hosted Alkaline Springs of the Voltri Massif, Italy. PMID:33383678
Evidence for the amnion-fetal gut-microbial axis in late gestation beef calves. PMID:33381746
Characterization of Bacterial Microbiota Composition along the Gastrointestinal Tract in Rabbits. PMID:33375259
Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions. PMID:33375098
Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos). PMID:33375015
Microbial Diversity of Pinnacle and Conical Microbial Mats in the Perennially Ice-Covered Lake Untersee, East Antarctica. PMID:33362751
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Comprehensive Survey of the Litter Bacterial Communities in Commercial Turkey Farms. PMID:33344533
Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species. PMID:33339542
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. PMID:33319778
High-throughput sequencing-based analysis of fungal diversity and taste quality evaluation of Douchi, a traditional fermented food. PMID:33312545
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data. PMID:33275647
Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome. PMID:33264383
Aeolian Prokaryotic Communities of the Global Dust Belt Over the Red Sea. PMID:33262740
Similar Gut Bacterial Microbiota in Two Fruit-Feeding Moth Pests Collected from Different Host Species and Locations. PMID:33260684
Cage bedding modifies metabolic and gut microbiota profiles in mouse studies applying dietary restriction. PMID:33257713
Effects of Polysaccharides From Auricularia auricula on the Immuno-Stimulatory Activity and Gut Microbiota in Immunosuppressed Mice Induced by Cyclophosphamide. PMID:33240285
Prebiotic Maltose Gel Can Promote the Vaginal Microbiota From BV-Related Bacteria Dominant to Lactobacillus in Rhesus Macaque. PMID:33240248
Bacterial community dynamics with rhizosphere of Calotropis procera and Senna alexandrina desert plants in Saudi Arabia. PMID:33214744
Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery. PMID:33213511
Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep. PMID:33203858
Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters. PMID:33193263
Preserving Microbial Community Integrity in Oilfield Produced Water. PMID:33193212
Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata. PMID:33193176
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. PMID:33188211
Culturing-Enriched Metabarcoding Analysis of the Oryctes rhinoceros Gut Microbiome. PMID:33187223
Unravelling the importance of the eukaryotic and bacterial communities and their relationship with Legionella spp. ecology in cooling towers: a complex network. PMID:33183356
Microbial Species-Area Relationships in Antarctic Cryoconite Holes Depend on Productivity. PMID:33171740
High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method. PMID:33158461
A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes. PMID:33158252
Molecular Evidence for an Active Microbial Methane Cycle in Subsurface Serpentinite-Hosted Groundwaters in the Samail Ophiolite, Oman. PMID:33127818
Lactobacillus plantarum L15 Alleviates Colitis by Inhibiting LPS-Mediated NF-κB Activation and Ameliorates DSS-Induced Gut Microbiota Dysbiosis. PMID:33123156
Analysis of molecular diversity within single cyanobacterial colonies from environmental samples. PMID:33116154
Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom. PMID:33101231
Phylotype-Level Characterization of Complex Communities of Lactobacilli Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach. PMID:33097506
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile. PMID:33092111
The Impact of Methane on Microbial Communities at Marine Arctic Gas Hydrate Bearing Sediment. PMID:33071992
Performance and community structure dynamics of microbial electrolysis cells operated on multiple complex feedstocks. PMID:33062055
Repetitive Sampling and Control Threshold Improve 16S rRNA Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale. PMID:33042049
Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. PMID:33021315
The Rumen Specific Bacteriome in Dry Dairy Cows and Its Possible Relationship with Phenotypes. PMID:33019774
A Mixed Phytogenic Modulates the Rumen Bacteria Composition and Milk Fatty Acid Profile of Water Buffaloes. PMID:33005643
Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts. PMID:32994284
Characterization of Fecal Microbiota with Clinical Specimen Using Long-Read and Short-Read Sequencing Platform. PMID:32993155
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment. PMID:32983024
Effects of proton pump inhibitor use on the esophageal microbial community. PMID:32967615
Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax). PMID:32963001
Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis. PMID:32934115
Spatial distribution of microbial communities among colonies and genotypes in nursery-reared Acropora cervicornis. PMID:32913671
Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters. PMID:32874778
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont. PMID:32870981
Multi-omics analysis to examine microbiota, host gene expression and metabolites in the intestine of black tiger shrimp (Penaeus monodon) with different growth performance. PMID:32864208
Integrated microbiota and metabolite profiles link Crohn's disease to sulfur metabolism. PMID:32859898
Geochemistry and Microbiology Predict Environmental Niches With Conditions Favoring Potential Microbial Activity in the Bakken Shale. PMID:32849400
Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes. PMID:32825668
Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak. PMID:32821539
Cyclophosphamide Increases Lactobacillus in the Intestinal Microbiota in Chickens. PMID:32817382
Microbial Communities across Global Marine Basins Show Important Compositional Similarities by Depth. PMID:32817104
Metagenomic Studies in Inflammatory Skin Diseases. PMID:32813091
Schizasterid Heart Urchins Host Microorganisms in a Digestive Symbiosis of Mesozoic Origin. PMID:32793161
Distribution of microbiota across different intestinal tract segments of a stranded dwarf minke whale, Balaenoptera acutorostrata. PMID:32783331
An ambient temperature collection and stabilization strategy for canine microbiota studies. PMID:32770113
Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches. PMID:32765444
Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome. PMID:32759335
The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community. PMID:32756341
The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes. PMID:32754127
Comparative Analysis of the Bacterial and Fungal Communities in the Gut and the Crop of Aedes albopictus Mosquitoes: A Preliminary Study. PMID:32752163
Extreme environmental conditions reduce coral reef fish biodiversity and productivity. PMID:32737315
Maternal diet during pregnancy and intestinal markers are associated with early gut microbiota. PMID:32728880
Characterization of skin surface and dermal microbiota in dogs with mast cell tumor. PMID:32724217
Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years. PMID:32724059
Seasonal Dynamics of the Activated Sludge Microbiome in Sequencing Batch Reactors, Assessed Using 16S rRNA Transcript Amplicon Sequencing. PMID:32709723
Local and Geographic Factors Shape the Occupancy-Frequency Distribution of Freshwater Bacteria. PMID:32705311
Enhanced biodiversity of gut flora and feed efficiency in pond cultured tilapia under reduced frequency feeding strategies. PMID:32702020
First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna. PMID:32655530
Single-Cell Genomics of Novel Actinobacteria With the Wood-Ljungdahl Pathway Discovered in a Serpentinizing System. PMID:32655506
Globally Abundant "Candidatus Udaeobacter" Benefits from Release of Antibiotics in Soil and Potentially Performs Trace Gas Scavenging. PMID:32641424
Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju. PMID:32633756
Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota. PMID:32630095
Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers. PMID:32620152
Host and environmental determinants of microbial community structure in the marine phyllosphere. PMID:32614866
Composition of the North American Wood Frog (Rana sylvatica) Bacterial Skin Microbiome and Seasonal Variation in Community Structure. PMID:32613267
The Human Microbiome and Its Impacts on Health. PMID:32612660
Combined Targeted and Non-targeted PCR Based Methods Reveal High Levels of Compliance in Probiotic Products Sold as Dietary Supplements in United States and Canada. PMID:32582075
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. PMID:32576248
Phyllosphere bacterial assembly in citrus crop under conventional and ecological management. PMID:32547860
Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households. PMID:32529181
Temporal Dynamics of the Gut Bacteriome and Mycobiome in the Weanling Pig. PMID:32526857
A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae). PMID:32516485
Comparative metagenomics reveals the microbial diversity and metabolic potentials in the sediments and surrounding seawaters of Qinhuangdao mariculture area. PMID:32497143
Host Species Determines the Composition of the Prokaryotic Microbiota in Phlebotomus Sandflies. PMID:32485988
Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes. PMID:32483294
What Can the Bacterial Community of Atta sexdens (Linnaeus, 1758) Tell Us about the Habitats in Which This Ant Species Evolves? PMID:32481532
Phylum-level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert. PMID:32478485
Microbiota changes induced by microencapsulated sodium butyrate in patients with inflammatory bowel disease. PMID:32476236
Station and train surface microbiomes of Mexico City's metro (subway/underground). PMID:32472074
The Gut Microbial Architecture of Efficiency Traits in the Domestic Poultry Model Species Japanese Quail (Coturnix japonica) Assessed by Mixed Linear Models. PMID:32471941
Comparing the Influence of Assembly Processes Governing Bacterial Community Succession Based on DNA and RNA Data. PMID:32466517
Enhanced microbial degradation of irradiated cellulose under hyperalkaline conditions. PMID:32459307
Poor Unstable Midgut Microbiome of Hard Ticks Contrasts With Abundant and Stable Monospecific Microbiome in Ovaries. PMID:32457850
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets. PMID:32414415
Cloacal Swabs Are Unreliable Sources for Estimating Lower Gastro-Intestinal Tract Microbiota Membership and Structure in Broiler Chickens. PMID:32408567
Whole genome sequence analysis of Cupriavidus campinensis S14E4C, a heavy metal resistant bacterium. PMID:32406019
Microplastics affect sedimentary microbial communities and nitrogen cycling. PMID:32398678
Bioorthogonal non-canonical amino acid tagging reveals translationally active subpopulations of the cystic fibrosis lung microbiota. PMID:32385294
Selective carbon sources influence the end products of microbial nitrate respiration. PMID:32372050
Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study. PMID:32355187
"Candidatus Ethanoperedens," a Thermophilic Genus of Archaea Mediating the Anaerobic Oxidation of Ethane. PMID:32317322
Effect of Dietary Fiber Sources on In-Vitro Fermentation and Microbiota in Monogastrics. PMID:32294893
Probiotic Mixture of Lactobacillus plantarum Strains Improves Lipid Metabolism and Gut Microbiota Structure in High Fat Diet-Fed Mice. PMID:32273874
Visualizing the effects of antibiotics on the mouse colonic mucus layer. PMID:32269946
Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae). PMID:32244698
Investigating the mycobiome of the Holcomb Creosote Superfund Site. PMID:32229362
Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort. PMID:32228581
Comparative Analysis of Rhizosphere Microbiomes of Southern Highbush Blueberry (Vaccinium corymbosum L.), Darrow's Blueberry (V. darrowii Camp), and Rabbiteye Blueberry (V. virgatum Aiton). PMID:32226421
Densely Populated Water Droplets in Heavy-Oil Seeps. PMID:32220837
Effect of sulfate addition on carbon flow and microbial community composition during thermophilic digestion of cellulose. PMID:32219464
Metagenomic Exploration of the Marine Sponge Mycale hentscheli Uncovers Multiple Polyketide-Producing Bacterial Symbionts. PMID:32209692
Host Genetic and Environmental Factors Shape the Composition and Function of Gut Microbiota in Populations Living at High Altitude. PMID:32190648
The different dietary sugars modulate the composition of the gut microbiota in honeybee during overwintering. PMID:32183692
Isolation of Exopolysaccharide-Producing Yeast and Lactic Acid Bacteria from Quinoa (Chenopodium Quinoa) Sourdough Fermentation. PMID:32183117
The Microbial Diversity of Cabbage Pest Delia radicum Across Multiple Life Stages. PMID:32174906
Siboglinidae Tubes as an Additional Niche for Microbial Communities in the Gulf of Cádiz-A Microscopical Appraisal. PMID:32150959
Microbiological and Immunological Markers in Milk and Infant Feces for Common Gastrointestinal Disorders: A Pilot Study. PMID:32121004
Influence of host phylogeny, geographical location and seed harvesting diet on the bacterial community of globally distributed Pheidole ants. PMID:32117618
NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis. PMID:32117417
Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats. PMID:32117151
Documentation of a new hypotrich species in the family Amphisiellidae, Lamtostyla gui n. sp. (Protista, Ciliophora) using a multidisciplinary approach. PMID:32111909
Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate. PMID:32103096
Dataset of microbial community structure in alcohol sprayed banana associated with ripening process. PMID:32099874
The environment and species affect gut bacteria composition in laboratory co-cultured Anopheles gambiae and Aedes albopictus mosquitoes. PMID:32099004
pH and Phosphate Induced Shifts in Carbon Flow and Microbial Community during Thermophilic Anaerobic Digestion. PMID:32093251
Beneficial Effects of Lactobacillus plantarum Strains on Non-Alcoholic Fatty Liver Disease in High Fat/High Fructose Diet-Fed Rats. PMID:32093158
Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. PMID:32092934
Development of the Ileal Microbiota in Three Broiler Breeds. PMID:32083101
Designing Probiotic Therapies With Broad-Spectrum Activity Against a Wildlife Pathogen. PMID:32038568
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data. PMID:32016344
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding. PMID:32016319
Shale gas development has limited effects on stream biology and geochemistry in a gradient-based, multiparameter study in Pennsylvania. PMID:32015108
Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures. PMID:32010063
Tools for Analysis of the Microbiome. PMID:32002757
Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota. PMID:31991727
Bifidobacterium longum-fermented rice bran and rice bran supplementation affects the gut microbiome and metabolome. PMID:31965839
Phylosymbiosis across Deeply Diverging Lineages of Omnivorous Cockroaches (Order Blattodea). PMID:31953337
Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations. PMID:31924621
Goethite Reduction by a Neutrophilic Member of the Alphaproteobacterial Genus Telmatospirillum. PMID:31921089
Rhizoplane Bacteria and Plant Species Co-determine Phosphorus-Mediated Microbial Legacy Effect. PMID:31921037
Nasopharyngeal Microbiota Profiles in Rural Venezuelan Children Are Associated With Respiratory and Gastrointestinal Infections. PMID:31919525
The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria. PMID:31911589
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES. PMID:31906254
Secreted metabolite-mediated interactions between rhizosphere bacteria and Trichoderma biocontrol agents. PMID:31887213
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine. PMID:31862994
Topical Application of Adult Cecal Contents to Eggs Transplants Spore-Forming Microbiota but Not Other Members of the Microbiota to Chicks. PMID:31862722
The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities. PMID:31856911
Strong Seasonality in Arctic Estuarine Microbial Food Webs. PMID:31849850
Diversity of bacteria associated with Hormaphidinae aphids (Hemiptera: Aphididae). PMID:31840419
Synergistic Effects of Probiotics and Phytobiotics on the Intestinal Microbiota in Young Broiler Chicken. PMID:31835884
The Role of Housing Environment and Dietary Protein Source on the Gut Microbiota of Chicken. PMID:31817422
Metabolically similar cohorts of bacteria exhibit strong cooccurrence patterns with diet items and eukaryotic microbes in lizard guts. PMID:31788191
Complementary DNA/RNA-Based Profiling: Characterization of Corrosive Microbial Communities and Their Functional Profiles in an Oil Production Facility. PMID:31787960
Calorie restriction slows age-related microbiota changes in an Alzheimer's disease model in female mice. PMID:31784610
Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples. PMID:31781817
Accumulation of di-2-ethylhexyl phthalate from polyvinyl chloride flooring into settled house dust and the effect on the bacterial community. PMID:31772847
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. PMID:31740763
Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal Communities. PMID:31740751
Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks. PMID:31730472
Phylogenetic analysis revealed that Salmonella Typhimurium ST313 isolated from humans and food in Brazil presented a high genomic similarity. PMID:31728978
The European Nucleotide Archive in 2019. PMID:31722421
Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sediments. PMID:31704947
Reintroducing mothur: 10 Years Later. PMID:31704678
The planktonic protist interactome: where do we stand after a century of research? PMID:31685936
Yeasts of Burden: Exploring the Mycobiome-Bacteriome of the Piglet GI Tract. PMID:31649634
It's what's on the inside that counts: stress physiology and the bacterial microbiome of a wild urban mammal. PMID:31640519
Prediction of microbial communities for urban metagenomics using neural network approach. PMID:31639050
High-Throughput Detection of Bacterial Community and Its Drug-Resistance Profiling From Local Reclaimed Wastewater Plants. PMID:31637218
Dietary fibre enrichment of supplemental feed modulates the development of the intestinal tract in suckling piglets. PMID:31636904
Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria. PMID:31636618
Current Status and Potential Applications of Underexplored Prokaryotes. PMID:31635256
Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. PMID:31619759
Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths. PMID:31614540
Microbial Community Shifts Associated With the Ongoing Stony Coral Tissue Loss Disease Outbreak on the Florida Reef Tract. PMID:31608047
Variation in Actinobacterial Community Composition and Potential Function in Different Soil Ecosystems Belonging to the Arid Heihe River Basin of Northwest China. PMID:31608036
Succession of Microbial Decomposers Is Determined by Litter Type, but Site Conditions Drive Decomposition Rates. PMID:31604765
Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding. PMID:31595089
Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy. PMID:31579593
Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus. PMID:31577799
Particle-Associated Microbial Community in a Subtropical Lake During Thermal Mixing and Phytoplankton Succession. PMID:31572346
Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota. PMID:31572332
Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205
Interaction Between Conservation Tillage and Nitrogen Fertilization Shapes Prokaryotic and Fungal Diversity at Different Soil Depths: Evidence From a 23-Year Field Experiment in the Mediterranean Area. PMID:31551981
Rapid analysis of bacterial composition in prosthetic joint infection by 16S rRNA metagenomic sequencing. PMID:31537994
High-throughput amplicon sequencing datasets of the metacommunity DNA of the gut microbiota of naturally occurring and laboratory aquaculture green sea urchins Lytechinus variegatus. PMID:31528670
Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling. PMID:31518350
Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth. PMID:31507556
A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades. PMID:31506037
Characterization of ecto- and endoparasite communities of wild Mediterranean teleosts by a metabarcoding approach. PMID:31504055
Microflora composition in the gastrointestinal tract in patients with Barrett's esophagus. PMID:31489224
Challenges in the construction of knowledge bases for human microbiome-disease associations. PMID:31488215
Effects of Regular Kefir Consumption on Gut Microbiota in Patients with Metabolic Syndrome: A Parallel-Group, Randomized, Controlled Study. PMID:31487797
Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432). PMID:31454394
Sweet Corn Stalk Treated with Saccharomyces Cerevisiae Alone or in Combination with Lactobacillus Plantarum: Nutritional Composition, Fermentation Traits and Aerobic Stability. PMID:31450836
Diversity, Distribution and Co-occurrence Patterns of Bacterial Communities in a Karst Cave System. PMID:31447801
Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms. PMID:31447791
Microdiversity ensures the maintenance of functional microbial communities under changing environmental conditions. PMID:31417155
Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota. PMID:31409660
Multidisciplinary and Comparative Investigations of Potential Psychobiotic Effects of Lactobacillus Strains Isolated From Newborns and Their Impact on Gut Microbiota and Ileal Transcriptome in a Healthy Murine Model. PMID:31404163
Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome. PMID:31399563
Data on microbial community composition of sludge from high altitude wastewater treatment plants determined by 16S rRNA gene sequencing. PMID:31372405
Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. PMID:31363029
Developing Gut Microbiota Exerts Colonisation Resistance to Clostridium (syn. Clostridioides) difficile in Piglets. PMID:31357520
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures. PMID:31333598
Co-cultivation of the marine sponge Halichondria panicea and its associated microorganisms. PMID:31320673
Lung Microbiota and Pulmonary Inflammatory Cytokines Expression Vary in Children With Tracheomalacia and Adenoviral or Mycoplasma pneumoniae Pneumonia. PMID:31316955
Microbiota of the Oropharynx and Endoscope Compared to the Esophagus. PMID:31308485
Human gut microbiome changes during a 10 week Randomised Control Trial for micronutrient supplementation in children with attention deficit hyperactivity disorder. PMID:31300667
Development of the Caecal Microbiota in Three Broiler Breeds. PMID:31294039
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. PMID:31286860
Community analysis of gut microbiota in hornets, the largest eusocial wasps, Vespa mandarinia and V. simillima. PMID:31285515
Ecological Functions of Agricultural Soil Bacteria and Microeukaryotes in Chitin Degradation: A Case Study. PMID:31281293
Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing. PMID:31273307
The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica. PMID:31271524
iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis. PMID:31269897
Microbial indicators of environmental perturbations in coral reef ecosystems. PMID:31227022
Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing. PMID:31226149
Altered Stool Microbiota of Infants with Cystic Fibrosis Shows a Reduction in Genera Associated with Immune Programming from Birth. PMID:31209076
Characterization of the microbiota and volatile components of kocho, a traditional fermented food of Ethiopia. PMID:31206089
Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice. PMID:31195972
Comparison of the microbiomes of two drinking water distribution systems-with and without residual chloramine disinfection. PMID:31174608
CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection. PMID:31142601
The piglet mycobiome during the weaning transition: a pilot study1. PMID:31136650
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples. PMID:31136592
Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars. PMID:31133990
Differences in the Cyanobacterial Community Composition of Biocrusts From the Drylands of Central Mexico. Are There Endemic Species? PMID:31130933
What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. PMID:31058158
Bacterial Community Succession, Transmigration, and Differential Gene Transcription in a Controlled Vertebrate Decomposition Model. PMID:31057499
Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products. PMID:31035452
Isolation, Whole-Genome Sequencing, and Annotation of Yimella sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168. PMID:31023801
Bacterial and Fungal Endophytic Microbiomes of Salicornia europaea. PMID:31003988
Improved feeding tolerance and growth are linked to increased gut microbial community diversity in very-low-birth-weight infants fed mother's own milk compared with donor breast milk. PMID:30982856
The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant. PMID:30973601
Root traits and belowground herbivores relate to plant-soil feedback variation among congeners. PMID:30952863
The Eukaryotic Life on Microplastics in Brackish Ecosystems. PMID:30949147
Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities. PMID:30902854
Circadian disruption and divergent microbiota acquisition under extended photoperiod regimens in chicken. PMID:30886778
Long-Term Organic Farming Manipulated Rhizospheric Microbiome and Bacillus Antagonism Against Pepper Blight (Phytophthora capsici). PMID:30873141
Composition and Dynamics of the Activated Sludge Microbiome during Seasonal Nitrification Failure. PMID:30872659
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework. PMID:30863673
Anaerobic Degradation of Sulfated Polysaccharides by Two Novel Kiritimatiellales Strains Isolated From Black Sea Sediment. PMID:30833937
Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach. PMID:30828325
Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community. PMID:30828319
Differences in the path to exit the ribosome across the three domains of life. PMID:30805621
Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya. PMID:30786927
Methods for Studying Gut Microbiota: A Primer for Physicians. PMID:30774267
Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino. PMID:30770764
Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment. PMID:30718896
Antarctic Krill Are Reservoirs for Distinct Southern Ocean Microbial Communities. PMID:30697197
A longitudinal assessment of host-microbe-parasite interactions resolves the zebrafish gut microbiome's link to Pseudocapillaria tomentosa infection and pathology. PMID:30678738
Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico. PMID:30662434
Marine Sponges as Chloroflexi Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade. PMID:30637337
Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community. PMID:30635580
Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae (sensu lato) during colonization in the laboratory. PMID:30635018
Next-generation sequencing analysis reveals high bacterial diversity in wild venomous and non-venomous snakes from India. PMID:30598660
The Microbial Communities of Leaves and Roots Associated with Turtle Grass (Thalassia testudinum) and Manatee Grass (Syringodium filliforme) are Distinct from Seawater and Sediment Communities, but Are Similar between Species and Sampling Sites. PMID:30587804
Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary. PMID:30586428
Analysis of the community composition and bacterial diversity of the rhizosphere microbiome across different plant taxa. PMID:30565881
Bacterial communities in the digester bed and liquid effluent of a microflush composting toilet system. PMID:30564526
Microbial community composition and diversity in the Indian Ocean deep sea REY-rich muds. PMID:30557300
Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios. PMID:30555447
Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome. PMID:30551580
New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract. PMID:30534599
Evidence for regional aeolian transport of freshwater micrometazoans in arid regions. PMID:30534597
The hindgut microbiota of praying mantids is highly variable and includes both prey-associated and host-specific microbes. PMID:30533025
A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements. PMID:30524406
The Human Microbiota and Obesity: A Literature Systematic Review of In Vivo Models and Technical Approaches. PMID:30513674
Rumen microbiome in dairy calves fed copper and grape-pomace dietary supplementations: Composition and predicted functional profile. PMID:30496201
Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies. PMID:30466491
Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems. PMID:30443603
Selective colonization ability of human fecal microbes in different mouse gut environments. PMID:30442907
Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains. PMID:30405664
Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland. PMID:30401770
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. PMID:30376898
Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities. PMID:30370186
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes. PMID:30352611
Uncovering vector, parasite, blood meal and microbiome patterns from mixed-DNA specimens of the Chagas disease vector Triatoma dimidiata. PMID:30335763
Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products. PMID:30333179
PQ, a new program for phylogeny reconstruction. PMID:30314446
Scrophularia striata Extract Supports Rumen Fermentation and Improves Microbial Diversity in vitro Compared to Monensin. PMID:30283414
Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes. PMID:30273414
Rabbit Microbiota Changes Throughout the Intestinal Tract. PMID:30271392
Progress of analytical tools and techniques for human gut microbiome research. PMID:30267313
Protists Within Corals: The Hidden Diversity. PMID:30233528
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis. PMID:30223889
EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PMID:30222734
Global Networks of Symbiodinium-Bacteria Within the Coral Holobiont. PMID:30218130
One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review. PMID:30214898
Methods for automatic reference trees and multilevel phylogenetic placement. PMID:30169747
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. PMID:30148503
Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila. PMID:30140258
Phylogenetic Clustering of Genes Reveals Shared Evolutionary Trajectories and Putative Gene Functions. PMID:30137329
First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat. PMID:30087413
Bipolar dispersal of red-snow algae. PMID:30082897
Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs. PMID:30072970
Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity. PMID:30038421
Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. PMID:30015804
Agulhas Current properties shape microbial community diversity and potential functionality. PMID:30002454
Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA. PMID:29986118
Asymptomatic Intestinal Colonization with Protist Blastocystis Is Strongly Associated with Distinct Microbiome Ecological Patterns. PMID:29963639
HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies. PMID:29950165
Seasonal variation in winter wheat field soil arbuscular mycorrhizal fungus communities after non-mycorrhizal crop cultivation. PMID:29931405
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. PMID:29912385
Visualization of Microbiota in Tick Guts by Whole-mount In Situ Hybridization. PMID:29912204
Taxonomy annotation and guide tree errors in 16S rRNA databases. PMID:29910992
Suitability and setup of next-generation sequencing-based method for taxonomic characterization of aquatic microbial biofilm. PMID:29909524
Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp. nov. PMID:29900684
Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam. PMID:29900079
Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures. PMID:29891000
Microscale Biosignatures and Abiotic Mineral Authigenesis in Little Hot Creek, California. PMID:29887837
Characterization of Pustular Mats and Related Rivularia-Rich Laminations in Oncoids From the Laguna Negra Lake (Argentina). PMID:29872427
Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). PMID:29872424
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research. PMID:29871915
Development of a Custom MALDI-TOF MS Database for Species-Level Identification of Bacterial Isolates Collected From Spacecraft and Associated Surfaces. PMID:29867782
Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench. PMID:29806625
The concordance between upper and lower respiratory microbiota in children with Mycoplasma pneumoniae pneumonia. PMID:29789582
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments. PMID:29762668
High turnover of faecal microbiome from algal feedstock experimental manipulations in the Pacific oyster (Crassostrea gigas). PMID:29749083
EMDUniFrac: exact linear time computation of the UniFrac metric and identification of differentially abundant organisms. PMID:29691633
Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences. PMID:29682424
Bacterial Community in Water and Air of Two Sub-Alpine Lakes in Taiwan. PMID:29681561
Gelatinous plankton is important in the diet of European eel (Anguilla anguilla) larvae in the Sargasso Sea. PMID:29670123
River Flow Impacts Bacterial and Archaeal Community Structure in Surface Sediments in the Northern Gulf of Mexico. PMID:29666882
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes. PMID:29666365
Fecal microbiota in the female prairie vole (Microtus ochrogaster). PMID:29579049
A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera. PMID:29458340
Mosquito vector-associated microbiota: Metabarcoding bacteria and eukaryotic symbionts across habitat types in Thailand endemic for dengue and other arthropod-borne diseases. PMID:29375803
Drylands soil bacterial community is affected by land use change and different irrigation practices in the Mezquital Valley, Mexico. PMID:29362388
What's the risk? Identifying potential human pathogens within grey-headed flying foxes faeces. PMID:29360880
Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio. PMID:29319806
Uncovering the Potential of Termite Gut Microbiome for Lignocellulose Bioconversion in Anaerobic Batch Bioreactors. PMID:29312279
Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk. PMID:29312208
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias. PMID:29291348
Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis. PMID:29276502
Associations between infant fungal and bacterial dysbiosis and childhood atopic wheeze in a nonindustrialized setting. PMID:29241587
Eukaryotic Microbiomes of Membrane-Attached Biofilms in Membrane Bioreactors Analyzed by High-Throughput Sequencing and Microscopic Observations. PMID:29237993
The Alteration of Nasopharyngeal and Oropharyngeal Microbiota in Children with MPP and Non-MPP. PMID:29232879
Use of a mixed culture strategy to isolate halophilic bacteria with antibacterial and cytotoxic activity from the Manaure solar saltern in Colombia. PMID:29216824
Denitrification by Anaeromyxobacter dehalogenans, a Common Soil Bacterium Lacking the Nitrite Reductase Genes nirS and nirK. PMID:29196287
Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments. PMID:29187708
Species-specific signatures of the microbiome from Camponotus and Colobopsis ants across developmental stages. PMID:29166404
Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession. PMID:29163397
Skin and fur bacterial diversity and community structure on American southwestern bats: effects of habitat, geography and bat traits. PMID:29093998
Cecal Microbiota in Broilers Fed with Prebiotics. PMID:29089963
Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds. PMID:29078310
Distinctive Gut Microbiota Is Associated with Diarrheagenic Escherichia coli Infections in Chilean Children. PMID:29075617
Prokaryotic community profiling of local algae wastewaters using advanced 16S rRNA gene sequencing. PMID:29063392
Flooding Duration Affects the Structure of Terrestrial and Aquatic Microbial Eukaryotic Communities. PMID:29026984
The sponge microbiome project. PMID:29020741
Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms. PMID:29020009
Identification of IL-40, a Novel B Cell-Associated Cytokine. PMID:28978694
Gearing up to handle the mosaic nature of life in the quest for orthologs. PMID:28968857
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. PMID:28967885
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis. PMID:28961926
Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. PMID:28934286
Analysis and comparison of the wolf microbiome under different environmental factors using three different data of Next Generation Sequencing. PMID:28900198
Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkiapurinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov. PMID:28853681
Metagenomic investigation of gastrointestinal microbiome in cattle. PMID:28830126
Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank. PMID:28824568
Characterization of Legionella Species from Watersheds in British Columbia, Canada. PMID:28776042
Concurrent Methane Production and Oxidation in Surface Sediment from Aarhus Bay, Denmark. PMID:28713339
Comparison of two bioinformatics tools used to characterize the microbial diversity and predictive functional attributes of microbial mats from Lake Obersee, Antarctica. PMID:28655556
The Importance of Bacterial Culture to Food Microbiology in the Age of Genomics. PMID:28507541
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.). PMID:28484436
A Robust Framework for Microbial Archaeology. PMID:28460196
Integrating the microbiota of the respiratory tract with the unified airway model. PMID:28427552
Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning. PMID:28424662
Cultured microbes represent a substantial fraction of the human and mouse gut microbiota. PMID:28418756
Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater. PMID:28384184
Microbial composition of spiny ants (Hymenoptera: Formicidae: Polyrhachis) across their geographic range. PMID:28381207
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups. PMID:28365734
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare? PMID:28361695
Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics. PMID:28348455
Investigation and manipulation of metabolically active methanogen community composition during rumen development in black goats. PMID:28341835
The Host Microbiome Regulates and Maintains Human Health: A Primer and Perspective for Non-Microbiologists. PMID:28292977
Diversity and Universality of Endosymbiotic Rickettsia in the Fish Parasite Ichthyophthirius multifiliis. PMID:28232825
Changes in Metabolically Active Bacterial Community during Rumen Development, and Their Alteration by Rhubarb Root Powder Revealed by 16S rRNA Amplicon Sequencing. PMID:28223972
Mineralizing Filamentous Bacteria from the Prony Bay Hydrothermal Field Give New Insights into the Functioning of Serpentinization-Based Subseafloor Ecosystems. PMID:28197130
The abundance and diversity of arbuscular mycorrhizal fungi are linked to the soil chemistry of screes and to slope in the Alpic paleo-endemic Berardia subacaulis. PMID:28192471
No effect of Bt Cry1Ie toxin on bacterial diversity in the midgut of the Chinese honey bees, Apis cerana cerana (Hymenoptera, Apidae). PMID:28139751
Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons. PMID:28103920
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus. PMID:28025668
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov. PMID:27902180
Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes. PMID:27894159
Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities. PMID:27868387
mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. PMID:27822553
16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife. PMID:27822541
Comparative analysis of the fecal bacterial community of five harbor seals (Phoca vitulina). PMID:27734626
Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins. PMID:27638319
The Core Gut Microbiome of the American Cockroach, Periplaneta americana, Is Stable and Resilient to Dietary Shifts. PMID:27590811
Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean. PMID:27559333
Morphine Promotes Colonization of Anastomotic Tissues with Collagenase - Producing Enterococcus faecalis and Causes Leak. PMID:27530446
Metabolic Capability of a Predominant Halanaerobium sp. in Hydraulically Fractured Gas Wells and Its Implication in Pipeline Corrosion. PMID:27446028
Phylogenomic Analyses and Comparative Studies on Genomes of the Bifidobacteriales: Identification of Molecular Signatures Specific for the Order Bifidobacteriales and Its Different Subclades. PMID:27446019
A human gut ecosystem protects against C. difficile disease by targeting TcdA. PMID:27329502
Seasonality and Locality Affect the Diversity of Anopheles gambiae and Anopheles coluzzii Midgut Microbiota from Ghana. PMID:27322614
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. PMID:27300277
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling. PMID:27224977
The effects of Bt Cry1Ie toxin on bacterial diversity in the midgut of Apis mellifera ligustica (Hymenoptera: Apidae). PMID:27090812
18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species. PMID:27087935
Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience. PMID:27039047
Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm. PMID:27006640
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. PMID:27004904
Composition and dynamics of the respiratory tract microbiome in intubated patients. PMID:26865050
Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis. PMID:26784944
Expanding the World of Marine Bacterial and Archaeal Clades. PMID:26779174
Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene. PMID:26739153
Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database. PMID:26651617
Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea. PMID:26648911
Profiling the Succession of Bacterial Communities throughout the Life Stages of a Higher Termite Nasutitermes arborum (Termitidae, Nasutitermitinae) Using 16S rRNA Gene Pyrosequencing. PMID:26444989
Biogeography and evolution of Thermococcus isolates from hydrothermal vent systems of the Pacific. PMID:26441901
Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis. PMID:26416167
Bacterial Diversity in the Soda Saline Crater Lake from Isabel Island, Mexico. PMID:26391805
Synthesis of phylogeny and taxonomy into a comprehensive tree of life. PMID:26385966
Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics. PMID:26283689
Recent Invasion of the Symbiont-Bearing Foraminifera Pararotalia into the Eastern Mediterranean Facilitated by the Ongoing Warming Trend. PMID:26270964
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota. PMID:26170282
Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream. PMID:26133389
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. PMID:26130132
Differences in the Faecal Microbiome in Schistosoma haematobium Infected Children vs. Uninfected Children. PMID:26114287
Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison. PMID:26089816
Databases for Microbiologists. PMID:26013493
Phylum level change in the cecal and fecal gut communities of rats fed diets containing different fermentable substrates supports a role for nitrogen as a factor contributing to community structure. PMID:25954902
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling. PMID:25915636
Impact of the CFTR-potentiator ivacaftor on airway microbiota in cystic fibrosis patients carrying a G551D mutation. PMID:25853698
Phylogenomic and molecular demarcation of the core members of the polyphyletic pasteurellaceae genera actinobacillus, haemophilus, and pasteurella. PMID:25821780
Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis. PMID:25789552
Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth. PMID:25713387
Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing. PMID:25556908
Type material in the NCBI Taxonomy Database. PMID:25398905
Shifting the metallocentric molybdoenzyme paradigm: the importance of pyranopterin coordination. PMID:25267303
Anti-MRSA-acting carbamidocyclophanes H-L from the Vietnamese cyanobacterium Nostoc sp. CAVN2. PMID:25182484
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. PMID:25118885
Syntrophic exchange in synthetic microbial communities. PMID:24778240
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. PMID:24316579
25 years of serving the community with ribosomal RNA gene reference databases and tools PubMed citations: 182.

182 articles citing: 25 years of serving the community with ribosomal RNA gene reference databases and tools

Gut microbiota profile of patients on peritoneal dialysis: comparison with household contacts. PMID:35906334
Using metabarcoding and droplet digital PCR to investigate drivers of historical shifts in cyanobacteria from six contrasting lakes. PMID:35896561
Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea. PMID:35889056
Exogenous Short Chain Fatty Acid Effects in APP/PS1 Mice. PMID:35860296
The Mini Colon Model: a benchtop multi-bioreactor system to investigate the gut microbiome. PMID:35844189
Early Weaning and Milk Substitutes Affect the Gut Microbiome, Metabolomics, and Antibody Profile in Goat Kids Suffering From Diarrhea. PMID:35801115
Statistical Learning and Uncommon Soil Microbiota Explain Biogeochemical Responses after Wildfire. PMID:35703548
Short-Term Dairy Product Elimination and Reintroduction Minimally Perturbs the Gut Microbiota in Self-Reported Lactose-Intolerant Adults. PMID:35695459
Development of gut microbiota during the first 2 years of life. PMID:35641542
Soil Environments Influence Gut Prokaryotic Communities in the Larvae of the Invasive Japanese Beetle Popillia japonica Newman. PMID:35572692
RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their Validation. PMID:35563314
Microbiome assembly predictably shapes diversity across a range of disturbance frequencies in experimental microcosms. PMID:35562363
Metabarcoding dataset on the elicitation of Soybean and Mungbean using Ragi Tape as elicitors for enhancing secondary metabolites production. PMID:35539029
Protist feeding patterns and growth rate are related to their predatory impacts on soil bacterial communities. PMID:35524686
Patchy Blooms and Multifarious Ecotypes of Labyrinthulomycetes Protists and Their Implication in Vertical Carbon Export in the Pelagic Eastern Indian Ocean. PMID:35502912
Prophylactic Addition of Glucose Suppresses Cyanobacterial Abundance in Lake Water. PMID:35330137
Microbe-Immune Crosstalk: Evidence That T Cells Influence the Development of the Brain Metabolome. PMID:35328680
The gut microbiome of exudivorous marmosets in the wild and captivity. PMID:35322053
Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka. PMID:35285678
Gut Microbiome Alterations following Postnatal Iron Supplementation Depend on Iron Form and Persist into Adulthood. PMID:35276770
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease. PMID:35251123
Stimulated Organic Carbon Cycling and Microbial Community Shift Driven by a Simulated Cold-Seep Eruption. PMID:35229641
Assessment of a New Copper-Based Formulation to Control Esca Disease in Field and Study of Its Impact on the Vine Microbiome, Vine Physiology and Enological Parameters of the Juice. PMID:35205905
The emerging potential of microbiome transplantation on human health interventions. PMID:35140882
Biological manganese-dependent sulfide oxidation impacts elemental gradients in redox-stratified systems: indications from the Black Sea water column. PMID:35124702
APOE genetics influence murine gut microbiome. PMID:35115575
Diversity of cultivable bacteria from deep-sea sediments of the Colombian Caribbean and their potential in bioremediation. PMID:35066712
Rokubacteria in Northern Peatlands: Habitat Preferences and Diversity Patterns. PMID:35056460
Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas. PMID:35051309
Comparison of ready-to-eat "organic" antimicrobials, sodium bisulfate, and sodium lactate, on Listeria monocytogenes and the indigenous microbiome of organic uncured beef frankfurters stored under refrigeration for three weeks. PMID:35051217
Single-cell Microbiomics Unveils Distribution and Patterns of Microbial Symbioses in the Natural Environment. PMID:35048168
Cytokinin-microbiome interactions regulate developmental functions. PMID:35033189
Trophic and symbiotic links between obligate-glacier water bears (Tardigrada) and cryoconite microorganisms. PMID:35020747
Comparison of Gut Microbiota and Metabolic Status of Sows With Different Litter Sizes During Pregnancy. PMID:35004929
Microbiome analyses of 12 psyllid species of the family Psyllidae identified various bacteria including Fukatsuia and Serratia symbiotica, known as secondary symbionts of aphids. PMID:34996376
Characterization of captive and wild 13-lined ground squirrel cecal microbiotas using Illumina-based sequencing. PMID:34980290
Cold Acclimation in Brachypodium Is Accompanied by Changes in Above-Ground Bacterial and Fungal Communities. PMID:34961295
Peat-Inhabiting Verrucomicrobia of the Order Methylacidiphilales Do Not Possess Methanotrophic Capabilities. PMID:34946166
Low-Molecular-Weight Seaweed-Derived Polysaccharides Lead to Increased Faecal Bulk but Do Not Alter Human Gut Health Markers. PMID:34945540
Microsporidian Infection in Mosquitoes (Culicidae) Is Associated with Gut Microbiome Composition and Predicted Gut Microbiome Functional Content. PMID:34939130
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol. PMID:34897429
Aberrant enteric neuromuscular system and dysbiosis in amyotrophic lateral sclerosis. PMID:34812107
Fifteen shades of clay: distinct microbial community profiles obtained from bentonite samples by cultivation and direct nucleic acid extraction. PMID:34785699
Knockout of Anopheles stephensi immune gene LRIM1 by CRISPR-Cas9 reveals its unexpected role in reproduction and vector competence. PMID:34784388
Evaluation of Effects of Laboratory Disinfectants on Mouse Gut Microbiota. PMID:34763749
Metagenomic analysis of Raphidiopsisraciborskii microbiome: beyond the individual. PMID:34754266
Gilbert's Syndrome and the Gut Microbiota - Insights From the Case-Control BILIHEALTH Study. PMID:34604105
Does algae β-glucan affect the fecal bacteriome in dairy calves? PMID:34591937
Ruminal and Fecal Bacteriome of Dairy Calves Fed Different Levels and Sources of NDF. PMID:34573671
Social groups constrain the spatiotemporal dynamics of wild sifaka gut microbiomes. PMID:34558751
In vitro Colon Fermentation of Soluble Arabinoxylan Is Modified Through Milling and Extrusion. PMID:34513901
A Combined Digital PCR and Next Generation DNA-Sequencing Based Approach for Tracking Nearshore Pollutant Dynamics Along the Southwest United States/Mexico Border. PMID:34421839
Lifelong dietary omega-3 fatty acid suppresses thrombotic potential through gut microbiota alteration in aged mice. PMID:34401676
Characterization of the virome associated with Haemagogus mosquitoes in Trinidad, West Indies. PMID:34400676
ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences. PMID:34395092
Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation. PMID:34384346
Local Network Properties of Soil and Rhizosphere Microbial Communities in Potato Plantations Treated with a Biological Product Are Important Predictors of Crop Yield. PMID:34378980
Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach. PMID:34335529
Helminth Microbiota Profiling Using Bacterial 16S rRNA Gene Amplicon Sequencing: From Sampling to Sequence Data Mining. PMID:34313994
Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient. PMID:34305833
The Effect of Secondary Metabolites Produced by Serratia marcescens on Aedes aegypti and Its Microbiota. PMID:34305822
Cytokinin drives assembly of the phyllosphere microbiome and promotes disease resistance through structural and chemical cues. PMID:34272494
Trunk Surgery as a Tool to Reduce Foliar Symptoms in Diseases of the Esca Complex and Its Influence on Vine Wood Microbiota. PMID:34210025
Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils. PMID:34207954
Passive Immunization of Chickens with Anti-Enterobactin Egg Yolk Powder for Campylobacter Control. PMID:34205835
Human encroachment into wildlife gut microbiomes. PMID:34172822
A Metagenomic Insight Into the Hindgut Microbiota and Their Metabolites for Dairy Goats Fed Different Rumen Degradable Starch. PMID:34163442
Soil, senescence and exudate utilisation: characterisation of the Paragon var. spring bread wheat root microbiome. PMID:34154664
Elevated Atmospheric CO2 Modifies Mostly the Metabolic Active Rhizosphere Soil Microbiome in the Giessen FACE Experiment. PMID:34148108
Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs. PMID:34116726
Impact of dietary carbohydrate type and protein-carbohydrate interaction on metabolic health. PMID:34099926
Profiling of tumour-associated microbiota in human hepatocellular carcinoma. PMID:34012007
Understanding the Shift in the Microbiome of Composts That Are Optimized for a Better Fit-for-Purpose in Growing Media. PMID:33897654
Non-small cell lung cancer microbiota characterization: Prevalence of enteric and potentially pathogenic bacteria in cancer tissues. PMID:33891617
Analysis of Soil Fungal and Bacterial Communities in Tianchi Volcano Crater, Northeast China. PMID:33810555
Raw Milk-Induced Protection against Food Allergic Symptoms in Mice Is Accompanied by Shifts in Microbial Community Structure. PMID:33810380
Highly parallelized droplet cultivation and prioritization of antibiotic producers from natural microbial communities. PMID:33764297
Investigation of the prevalence and catalytic activity of rubredoxin-fused alkane monooxygenases (AlkBs). PMID:33752122
The lung microbiota in Korean patients with non-tuberculous mycobacterial pulmonary disease. PMID:33736609
Redox-active antibiotics enhance phosphorus bioavailability. PMID:33674490
Amazonia Seasons Have an Influence in the Composition of Bacterial Gut Microbiota of Mangrove Oysters (Crassostrea gasar). PMID:33643371
Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. PMID:33630830
Sea foams are ephemeral hotspots for distinctive bacterial communities contrasting sea-surface microlayer and underlying surface water. PMID:33625484
Biosurfactants Produced by Phyllosphere-Colonizing Pseudomonads Impact Diesel Degradation but Not Colonization of Leaves of Gnotobiotic Arabidopsis thaliana. PMID:33608298
Patterns in Benthic Microbial Community Structure Across Environmental Gradients in the Beaufort Sea Shelf and Slope. PMID:33584606
Terroir Is the Main Driver of the Epiphytic Bacterial and Fungal Communities of Mango Carposphere in Reunion Island. PMID:33584584
Ecological distribution and potential roles of Woesearchaeota in anaerobic biogeochemical cycling unveiled by genomic analysis. PMID:33552450
Database Mining to Unravel the Ecology of the Phylum Chloroflexi in Methanogenic Full Scale Bioreactors. PMID:33552017
Development of a robust protocol for the characterization of the pulmonary microbiota. PMID:33547364
Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants. PMID:33479274
Rock Surface Fungi in Deep Continental Biosphere-Exploration of Microbial Community Formation with Subsurface In Situ Biofilm Trap. PMID:33383728
Methane-Oxidizing Communities in Lichen-Dominated Forested Tundra Are Composed Exclusively of High-Affinity USCα Methanotrophs. PMID:33371270
Synthetic Sequencing Standards: A Guide to Database Choice for Rumen Microbiota Amplicon Sequencing Analysis. PMID:33363527
Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents. PMID:33328652
Sustained organic loading disturbance favors nitrite accumulation in bioreactors with variable resistance, recovery and resilience of nitrification and nitrifiers. PMID:33288775
Unravelling the importance of the eukaryotic and bacterial communities and their relationship with Legionella spp. ecology in cooling towers: a complex network. PMID:33183356
Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile. PMID:33153049
Response of Salivary Microbiota to Caries Preventive Treatment in Aboriginal and Torres Strait Islander Children. PMID:33149844
Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures. PMID:33117966
Advantages and Limitations of 16S rRNA Next-Generation Sequencing for Pathogen Identification in the Diagnostic Microbiology Laboratory: Perspectives from a Middle-Income Country. PMID:33066371
Performance and community structure dynamics of microbial electrolysis cells operated on multiple complex feedstocks. PMID:33062055
Intestinal inflammation alters mucosal carbohydrate foraging and monosaccharide incorporation into microbial glycans. PMID:32975882
Ultra-sensitive and rapid detection of nucleic acids and microorganisms in body fluids using single-molecule tethering. PMID:32963224
Spatiotemporal Changes in the Bacterial Community of the Meromictic Lake Uchum, Siberia. PMID:32915303
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont. PMID:32870981
Initial Sequencing and Characterization of the Gastrointestinal and Oral Microbiota in Urban Pakistani Adults. PMID:32850502
High-Fat Diet Induced Alteration of Mice Microbiota and the Functional Ability to Utilize Fructooligosaccharide for Ethanol Production. PMID:32850478
The Composition of Microbial Communities in Six Streams, and Its Association With Environmental Conditions, and Foodborne Pathogen Isolation. PMID:32849385
Two MarR-Type Repressors Balance Precursor Uptake and Glycine Betaine Synthesis in Bacillus subtilis to Provide Cytoprotection Against Sustained Osmotic Stress. PMID:32849357
Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors. PMID:32843539
Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics. PMID:32793124
SPDB: a specialized database and web-based analysis platform for swine pathogens. PMID:32761141
A Comparative Study of the Adherent-Invasive Escherichia coli Population and Gut Microbiota of Healthy Vegans versus Omnivores. PMID:32751971
Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps. PMID:32655505
Plant Growth Enhancement using Rhizospheric Halotolerant Phosphate Solubilizing Bacterium Bacillus licheniformis QA1 and Enterobacter asburiae QF11 Isolated from Chenopodium quinoa Willd. PMID:32599701
Challenges in Developing a Human Model System for Skin Microbiome Research. PMID:32522484
A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae). PMID:32516485
Enhanced microbial degradation of irradiated cellulose under hyperalkaline conditions. PMID:32459307
Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach. PMID:32457713
Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis. PMID:32457702
Modelling Free-Living and Particle-Associated Bacterial Assemblages across the Deep and Hypoxic Lower St. Lawrence Estuary. PMID:32434843
Organic management promotes natural pest control through altered plant resistance to insects. PMID:32415295
Characterizing changes in soil microbiome abundance and diversity due to different cover crop techniques. PMID:32369501
Functional Genomics Differentiate Inherent and Environmentally Influenced Traits in Dinoflagellate and Diatom Communities. PMID:32326461
"Candidatus Ethanoperedens," a Thermophilic Genus of Archaea Mediating the Anaerobic Oxidation of Ethane. PMID:32317322
Plasma levels of trimethylamine-N-oxide can be increased with 'healthy' and 'unhealthy' diets and do not correlate with the extent of atherosclerosis but with plaque instability. PMID:32267921
Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens. PMID:32235351
Densely Populated Water Droplets in Heavy-Oil Seeps. PMID:32220837
Metagenomic Exploration of the Marine Sponge Mycale hentscheli Uncovers Multiple Polyketide-Producing Bacterial Symbionts. PMID:32209692
tRNA Queuosine Modification Enzyme Modulates the Growth and Microbiome Recruitment to Breast Tumors. PMID:32182756
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils. PMID:32182280
Ursodeoxycholic acid enriches intestinal bile salt hydrolase-expressing Bacteroidetes in cholestatic pregnancy. PMID:32127609
Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment. PMID:32127422
Murine Gut Microbiome Association With APOE Alleles. PMID:32117315
Documentation of a new hypotrich species in the family Amphisiellidae, Lamtostyla gui n. sp. (Protista, Ciliophora) using a multidisciplinary approach. PMID:32111909
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
Response of the human gut and saliva microbiome to urbanization in Cameroon. PMID:32071424
Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Zetaproteobacteria Iron Mats at Marine Hydrothermal Vents. PMID:32071158
MICHELINdb: a web-based tool for mining of helminth-microbiota interaction datasets, and a meta-analysis of current research. PMID:32008578
Bifidobacterium longum-fermented rice bran and rice bran supplementation affects the gut microbiome and metabolome. PMID:31965839
Phylosymbiosis across Deeply Diverging Lineages of Omnivorous Cockroaches (Order Blattodea). PMID:31953337
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
Paneth Cell Ablation Aggravates Pancreatic and Intestinal Injuries in a Rat Model of Acute Necrotizing Pancreatitis after Normal and High-Fat Diet. PMID:31827383
Novel copper-containing membrane monooxygenases (CuMMOs) encoded by alkane-utilizing Betaproteobacteria. PMID:31796935
Characterization and comprehensive analysis of the ecological interaction networks of bacterial communities in Paullinia cupana var. sorbilis by 16S rRNA gene metabarcoding. PMID:31728757
Reintroducing mothur: 10 Years Later. PMID:31704678
Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling. PMID:31699148
Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria. PMID:31636618
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes. PMID:31636614
Thermoanaerosceptrum fracticalcis gen. nov. sp. nov., a Novel Fumarate-Fermenting Microorganism From a Deep Fractured Carbonate Aquifer of the US Great Basin. PMID:31611860
Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus. PMID:31533247
Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling. PMID:31518350
Characterization of ecto- and endoparasite communities of wild Mediterranean teleosts by a metabarcoding approach. PMID:31504055
Metagenomic Evaluation of Bacterial and Fungal Assemblages Enriched within Diffusion Chambers and Microbial Traps Containing Uraniferous Soils. PMID:31489900
Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome. PMID:31399563
Effect of temperature on methane oxidation and community composition in landfill cover soil. PMID:31317292
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. PMID:31286860
Acetotrophic Activity Facilitates Methanogenesis from LCFA at Low Temperatures: Screening from Mesophilic Inocula. PMID:31191117
Effects of Agricultural Management on Rhizosphere Microbial Structure and Function in Processing Tomato Plants. PMID:31175190
Sociodemographic variation in the oral microbiome. PMID:31151886
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework. PMID:30863673
Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses. PMID:30846981
A census-based estimate of Earth's bacterial and archaeal diversity. PMID:30716065
The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives. PMID:30715272
Optimizing peptide nucleic acid probes for hybridization-based detection and identification of bacterial pathogens. PMID:30656297
Effect of large magnetotactic bacteria with polyphosphate inclusions on the phosphate profile of the suboxic zone in the Black Sea. PMID:30643197
Lactobacillus rhamnosus GG treatment improves intestinal permeability and modulates microbiota dysbiosis in an experimental model of sepsis. PMID:30628657
ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa. PMID:30533906
The hindgut microbiota of praying mantids is highly variable and includes both prey-associated and host-specific microbes. PMID:30533025
Selective colonization ability of human fecal microbes in different mouse gut environments. PMID:30442907
Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains. PMID:30405664
The GbsR Family of Transcriptional Regulators: Functional Characterization of the OpuAR Repressor. PMID:30405586
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. PMID:30376898
Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains. PMID:30333799
OpuF, a New Bacillus Compatible Solute ABC Transporter with a Substrate-Binding Protein Fused to the Transmembrane Domain. PMID:30097444
Microbial Community Composition Reveals Spatial Variation and Distinctive Core Microbiome of the Weaver Ant Oecophylla smaragdina in Malaysia. PMID:30018403
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages. PMID:29884244
Development of a Custom MALDI-TOF MS Database for Species-Level Identification of Bacterial Isolates Collected From Spacecraft and Associated Surfaces. PMID:29867782
Microbiome and Culture Based Analysis of Chronic Rhinosinusitis Compared to Healthy Sinus Mucosa. PMID:29755418
Benthic Bacterial Community Composition in the Oligohaline-Marine Transition of Surface Sediments in the Baltic Sea Based on rRNA Analysis. PMID:29520255
Parallelization of MAFFT for large-scale multiple sequence alignments. PMID:29506019
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem. PMID:29482646
http://dx.doi.org/10.1093/nar/gkt1209
http://dx.doi.org/10.1093/nar/gks1219

http://dx.doi.org/10.1093/nar/gkm864

http://dx.doi.org/10.1093/bioinformatics/bts252

http://dx.doi.org/10.1016/j.jbiotec.2017.06.1198

Tags:

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More detailed information about this field from each metasource.

multiple sequence alignment
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

next generation dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

oligonucleotide probe annotation
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

ribosomal rna
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: SILVA; SILVA; DOI: https://doi.org/10.25504/FAIRsharing.5vtYGG; Last edited: April 27, 2021, 7:43 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

taxonomy and identification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

archaea
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

bacteria
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

bioinformatics
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

eukarya
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

hylogenetic inference
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

microbial dna sequence data
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

molecular biodiversity
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

rdna
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

rrna
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

taxonomy of the eukaryotics
metasource: re3data.org
version: re3data.org: SILVA; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FP60 last accessed: 2022-11-04

functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

sequence analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

phylogenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

taxonomy
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:40.192963

multiple sequence alignment next generation dna sequencing oligonucleotide probe annotation ribosomal rna taxonomic classification genomics taxonomy and identification archaea bacteria bioinformatics eukarya hylogenetic inference microbial dna sequence data molecular biodiversity rdna rrna taxonomy of the eukaryotics functional, regulatory and non-coding rna sequence analysis phylogenetics taxonomy

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Ribosomal Database Project (RDP-II)

Database of Aligned Ribosomal Complexes

probeBase

5S Ribosomal RNA Database

NCBI Taxonomy

The ribosomal RNA operon copy number database

European rRNA database

16S and 23S Ribosomal RNA Mutation Database

Greengenes

SYSTERS

cpnDB

RIDOM - Ribosomal Differentiation of Medical Microorganisms

PhylomeDB

The Small Subunit rRNA Modification Database

European Nucleotide Archive

UCSC Genome Browser database

Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database

MGnify

StrainInfo.net Bioportal

eLibrary of Microbial Systematics and Genomics