EffectiveS346
Prediction of intact secretion systems III, IV and VI in bacterial genomes by using a Support Vector Machine (SVM) approach.
Description
More detailed information about this field from each metasource.
Prediction of intact secretion systems III, IV and VI in bacterial genomes by using a Support Vector Machine (SVM) approach.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:34.836091
Webpage:
http://www.effectivedb.org/method/effectives346Webpage
More detailed information about this field from each metasource.
http://www.effectivedb.org/method/effectives346
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:34.836091
Publications:
Publications
More detailed information about this field from each metasource.
Effective--a database of predicted secreted bacterial proteins
PMID: 21071416
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:34.836091
Publications
More detailed information about this field from each metasource.
Effective--a database of predicted secreted bacterial proteins
PMID: 21071416
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:34.836091
-
Effective--a database of predicted secreted bacterial proteins
PubMed citations: 57.
57 articles citing: Effective--a database of predicted secreted bacterial proteins
A Search for Novel Legionella pneumophila Effector Proteins Reveals a Strain Specific Nucleotropic Effector. PMID:35711665
Computational Systems Biology of Alfalfa - Bacterial Blight Host-Pathogen Interactions: Uncovering the Complex Molecular Networks for Developing Durable Disease Resistant Crop. PMID:35251063
Complete genome sequence of the kiwifruit bacterial canker pathogen Pseudomonas savastanoi strain MHT1. PMID:35120460
alfaNET: A Database of Alfalfa-Bacterial Stem Blight Protein-Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria. PMID:34361108
The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins. PMID:34145238
De Novo Sequencing Provides Insights Into the Pathogenicity of Foodborne Vibrio parahaemolyticus. PMID:34055666
Structural Profiling of Bacterial Effectors Reveals Enrichment of Host-Interacting Domains and Motifs. PMID:34012977
Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. PMID:33339499
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. PMID:33084862
Molecular Mimicry: a Paradigm of Host-Microbe Coevolution Illustrated by Legionella. PMID:33024033
Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism. PMID:32900811
Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont. PMID:32817434
Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f. PMID:32226422
Eukaryotic Cell Permeabilisation to Identify New Putative Chlamydial Type III Secretion System Effectors Secreted within Host Cell Cytoplasm. PMID:32138376
Complete genome sequences of two Enterococcus faecium strains and comparative genomic analysis. PMID:32104261
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum. PMID:31665454
Whole genome sequencing and identification of host-interactive genes in the rice endophytic Leifsonia sp. ku-ls. PMID:31482368
Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity. PMID:29726925
StraPep: a structure database of bioactive peptides. PMID:29688386
LasΔ5315 Effector Induces Extreme Starch Accumulation and Chlorosis as Ca. Liberibacter asiaticus Infection in Nicotiana benthamiana. PMID:29467782
Complete genome sequence of the Vibrio vulnificus strain VV2014DJH, a human-pathogenic bacterium isolated from a death case in China. PMID:29201149
Global Transcriptome Profiling of Xanthomonas oryzae pv. oryzae under in planta Growth and in vitro Culture Conditions. PMID:29018309
A TALE-inspired computational screen for proteins that contain approximate tandem repeats. PMID:28617832
Comparative Genomic and Phylogenetic Analysis of a Shiga Toxin Producing Shigella sonnei (STSS) Strain. PMID:28611956
Biphasic Metabolism and Host Interaction of a Chlamydial Symbiont. PMID:28593198
Complete sequence and comparative genomic analysis of eight native Pseudomonas syringae plasmids belonging to the pPT23A family. PMID:28486968
Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1. PMID:28443080
Complete Genome Sequence of Highly Virulent Haemophilus parasuis Serotype 11 Strain SC1401. PMID:27445368
Interactions "Candidatus Liberibacter solanacearum"-Bactericera cockerelli: Haplotype Effect on Vector Fitness and Gene Expression Analyses. PMID:27376032
Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts. PMID:27190004
Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. PMID:26849311
Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain. PMID:26823958
Genome-wide Screen of Pseudomonas aeruginosa in Saccharomyces cerevisiae Identifies New Virulence Factors. PMID:26636043
EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. PMID:26590402
BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors. PMID:26120140
Extracellular matrix-associated proteins form an integral and dynamic system during Pseudomonas aeruginosa biofilm development. PMID:26029669
The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements. PMID:26029184
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. PMID:25848874
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. PMID:25377257
Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches. PMID:25350354
Massive expansion of Ubiquitination-related gene families within the Chlamydiae. PMID:25069652
The genome of the fungal-interactive soil bacterium Burkholderia terrae BS001-a plethora of outstanding interactive capabilities unveiled. PMID:24923325
PhyBin: binning trees by topology. PMID:24167782
Functional analysis of SleC from Clostridium difficile: an essential lytic transglycosylase involved in spore germination. PMID:24140647
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PMID:24109552
The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors. PMID:24073886
New players in the same old game: a system level in silico study to predict type III secretion system and effector proteins in bacterial genomes reveals common themes in T3SS mediated pathogenesis. PMID:23890184
New sub-family of lysozyme-like proteins shows no catalytic activity: crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium. PMID:23572252
Evolutionary Genomics of Salmonella enterica Subspecies. PMID:23462113
RNA-seq and microarray complement each other in transcriptome profiling. PMID:23153100
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii. PMID:23133394
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
T3DB: an integrated database for bacterial type III secretion system. PMID:22545727
Genomic characterization of the Taylorella genus. PMID:22235352
Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms. PMID:22014092
Unity in variety--the pan-genome of the Chlamydiae. PMID:21690563
Tags:
metagenomics comparative genomics
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