DRAMP
updated data repository of antimicrobial peptides | Browse, Create and Mining Antimicrobial Peptides | 157 new entries are added to in DRAMP. 33 entries are natural AMPs including 31 animal AMPs and 2 plant AMPs. 124 entries are synthetic AMPs | A brief introduction to DRAMP database | DRAMP database is an information portal to biological active peptides. Peptides in this database come from three sources : Public databases (Swiss-Prot, PDB, PubMed), Clinical antimicrobial peptides (preclinical and clinical) and Patents | DRAMP(Data repository of antimicrobial peptides) is an open-access and manually curated database harboring diverse annotations of AMPs including sequences, structures, activities, physicochemical, patent, clinical and reference information | We are responsible for maintaining the website daily and updating the database regularly
Description
More detailed information about this field from each metasource.
updated data repository of antimicrobial peptides | Browse, Create and Mining Antimicrobial Peptides | 157 new entries are added to in DRAMP. 33 entries are natural AMPs including 31 animal AMPs and 2 plant AMPs. 124 entries are synthetic AMPs | A brief introduction to DRAMP database | DRAMP database is an information portal to biological active peptides. Peptides in this database come from three sources : Public databases (Swiss-Prot, PDB, PubMed), Clinical antimicrobial peptides (preclinical and clinical) and Patents | DRAMP(Data repository of antimicrobial peptides) is an open-access and manually curated database harboring diverse annotations of AMPs including sequences, structures, activities, physicochemical, patent, clinical and reference information | We are responsible for maintaining the website daily and updating the database regularly
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:29.808963
Webpage:
http://dramp.cpu-bioinfor.org/Webpage
More detailed information about this field from each metasource.
http://dramp.cpu-bioinfor.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:29.808963
Publications:
Publications
More detailed information about this field from each metasource.
DRAMP 2.0, an updated data repository of antimicrobial peptides
PMID: 31409791
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.808963
Publications
More detailed information about this field from each metasource.
DRAMP 2.0, an updated data repository of antimicrobial peptides
PMID: 31409791
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.808963
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DRAMP 2.0, an updated data repository of antimicrobial peptides
PubMed citations: 74.
74 articles citing: DRAMP 2.0, an updated data repository of antimicrobial peptides
Traditional and Computational Screening of Non-Toxic Peptides and Approaches to Improving Selectivity. PMID:35337121
Antimicrobial Compounds from Microorganisms. PMID:35326749
New Insights into the Toxin Diversity and Antimicrobial Activity of the "Fire Coral" Millepora complanata. PMID:35324703
Machine Learning Prediction of Antimicrobial Peptides. PMID:35298806
Antimicrobial Peptide Mechanisms Studied by Whole-Cell Deuterium NMR. PMID:35269882
SuPepMem: A database of innate immune system peptides and their cell membrane interactions. PMID:35222846
Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products. PMID:35195510
Identification of Distinct Characteristics of Antibiofilm Peptides and Prospection of Diverse Sources for Efficacious Sequences. PMID:35185814
Drug Delivery Systems for the Oral Administration of Antimicrobial Peptides: Promising Tools to Treat Infectious Diseases. PMID:35146486
The evolution of clinical guidelines for antimicrobial photodynamic therapy of skin. PMID:35132604
Multiple roles of ribosomal antimicrobial peptides in tackling global antimicrobial resistance. PMID:35116161
In Silico and In Vitro Structure-Activity Relationship of Mastoparan and Its Analogs. PMID:35056876
Indolicidin revisited: biological activity, potential applications and perspectives of an antimicrobial peptide not yet fully explored. PMID:35018535
AMPing Up the Search: A Structural and Functional Repository of Antimicrobial Peptides for Biofilm Studies, and a Case Study of Its Application to Corynebacterium striatum, an Emerging Pathogen. PMID:34976872
Rational Designed Hybrid Peptides Show up to a 6-Fold Increase in Antimicrobial Activity and Demonstrate Different Ultrastructural Changes as the Parental Peptides Measured by BioSAXS. PMID:34966279
An Antibacterial Peptide with High Resistance to Trypsin Obtained by Substituting d-Amino Acids for Trypsin Cleavage Sites. PMID:34943677
Cell-Penetrating Antimicrobial Peptides Derived from an Atypical Staphylococcal δ-Toxin. PMID:34937169
Antiviral peptides against the main protease of SARS-CoV-2: A molecular docking and dynamics study. PMID:34909064
In-Silico Tool for Predicting, Scanning, and Designing Defensins. PMID:34880873
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data. PMID:34850155
The Methods of Digging for "Gold" within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools. PMID:34828362
AI4AMP: an Antimicrobial Peptide Predictor Using Physicochemical Property-Based Encoding Method and Deep Learning. PMID:34783578
The transposable element-rich genome of the cereal pest Sitophilus oryzae. PMID:34749730
Mining for encrypted peptide antibiotics in the human proteome. PMID:34737399
Mechanistic Understanding from Molecular Dynamics in Pharmaceutical Research 2: Lipid Membrane in Drug Design. PMID:34681286
Discovery, Optimization, and Clinical Application of Natural Antimicrobial Peptides. PMID:34680498
PepVAE: Variational Autoencoder Framework for Antimicrobial Peptide Generation and Activity Prediction. PMID:34659152
Antimicrobial peptides as a feed additive alternative to animal production, food safety and public health implications: An overview. PMID:34632120
PredAPP: Predicting Anti-Parasitic Peptides with Undersampling and Ensemble Approaches. PMID:34608613
Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2. PMID:34595489
Bovine NK-lysin peptides exert potent antimicrobial activity against multidrug-resistant Salmonella outbreak isolates. PMID:34588573
Antimicrobial Peptides and Their Applications in Biomedical Sector. PMID:34572676
Accelerating antibiotic discovery through artificial intelligence. PMID:34504303
Taxonomic bias in AMP prediction of invertebrate peptides. PMID:34504226
Antimicrobial peptides: mechanism of action, activity and clinical potential. PMID:34496967
APPTEST is a novel protocol for the automatic prediction of peptide tertiary structures. PMID:34396417
DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides. PMID:34390348
Machine learning designs non-hemolytic antimicrobial peptides. PMID:34349895
Phage-encoded cationic antimicrobial peptide required for lysis. PMID:34339297
Antimicrobial Peptides and Proteins: From Nature's Reservoir to the Laboratory and Beyond. PMID:34222199
Comparison of a Short Linear Antimicrobial Peptide with Its Disulfide-Cyclized and Cyclotide-Grafted Variants against Clinically Relevant Pathogens. PMID:34201398
Prediction of Anticancer Peptides with High Efficacy and Low Toxicity by Hybrid Model Based on 3D Structure of Peptides. PMID:34073203
In Silico Predicted Antifungal Peptides: In Vitro and In Vivo Anti-Candida Activity. PMID:34072802
The multifaceted nature of antimicrobial peptides: current synthetic chemistry approaches and future directions. PMID:34042120
Genomic analysis of novel Yarrowia-like yeast symbionts associated with the carrion-feeding burying beetle Nicrophorus vespilloides. PMID:33941076
An Overview of Biological and Computational Methods for Designing Mechanism-Informed Anti-biofilm Agents. PMID:33927701
Aggregation and Its Influence on the Bioactivities of a Novel Antimicrobial Peptide, Temporin-PF, and Its Analogues. PMID:33925935
Deep Learning for Novel Antimicrobial Peptide Design. PMID:33810011
Molecular Dynamics for Antimicrobial Peptide Discovery. PMID:33558318
Rediscovery of antimicrobial peptides as therapeutic agents. PMID:33527313
Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies. PMID:33497434
Molecular engineering of antimicrobial peptides: microbial targets, peptide motifs and translation opportunities. PMID:33495702
Ensemble-AMPPred: Robust AMP Prediction and Recognition Using the Ensemble Learning Method with a New Hybrid Feature for Differentiating AMPs. PMID:33494403
(Re)Defining the Proline-Rich Antimicrobial Peptide Family and the Identification of Putative New Members. PMID:33335890
Blattella germanica displays a large arsenal of antimicrobial peptide genes. PMID:33273496
Design, Screening, and Testing of Non-Rational Peptide Libraries with Antimicrobial Activity: In Silico and Experimental Approaches. PMID:33265897
Antibiofilm Activity on Candida albicans and Mechanism of Action on Biomembrane Models of the Antimicrobial Peptide Ctn[15-34]. PMID:33172206
DBAASP v3: database of antimicrobial/cytotoxic activity and structure of peptides as a resource for development of new therapeutics. PMID:33151284
CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides. PMID:33142753
Identification of New Ocellatin Antimicrobial Peptides by cDNA Precursor Cloning in the Frame of This Family of Intriguing Peptides. PMID:33138046
Antimicrobial Peptides as Potential Antiviral Factors in Insect Antiviral Immune Response. PMID:32983149
Peptides with Dual Antimicrobial-Anticancer Activity: Strategies to Overcome Peptide Limitations and Rational Design of Anticancer Peptides. PMID:32947811
Antimicrobial peptides - Advances in development of therapeutic applications. PMID:32931796
The Anti-Microbial Peptide (Lin-SB056-1)2-K Reduces Pro-Inflammatory Cytokine Release through Interaction with Pseudomonas aeruginosa Lipopolysaccharide. PMID:32911618
An Update on Antimicrobial Peptides (AMPs) and Their Delivery Strategies for Wound Infections. PMID:32887353
LAMP2: a major update of the database linking antimicrobial peptides. PMID:32844169
Transcriptome profiling and in silico detection of the antimicrobial peptides of red king crab Paralithodes camtschaticus. PMID:32728087
Antimicrobial Peptides as Anticancer Agents: Functional Properties and Biological Activities. PMID:32575664
Engineered Cationic Antimicrobial Peptides (eCAPs) to Combat Multidrug-Resistant Bacteria. PMID:32486228
Antimicrobial Peptides as Probes in Biosensors Detecting Whole Bacteria: A Review. PMID:32344585
Antifungal Peptides as Therapeutic Agents. PMID:32257965
BioDADPep: A Bioinformatics database for anti diabetic peptides. PMID:31902976
ADAPTABLE: a comprehensive web platform of antimicrobial peptides tailored to the user's research. PMID:31740563
Meta-iAVP: A Sequence-Based Meta-Predictor for Improving the Prediction of Antiviral Peptides Using Effective Feature Representation. PMID:31731751
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small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.808963
preclinical and clinical studies
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.808963
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.808963
Tags
More detailed information about this field from each metasource.
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:29.808963
preclinical and clinical studies
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:29.808963
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:29.808963
small molecule preclinical and clinical studies microbiology
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