DNA Modification Database
Names
More detailed information about this field from each metasource.
DNA Modification Database
metasource: Fairsharing.org
version: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
DNAmod
metasource: Fairsharing.org
version: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
DNA modification database
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
DNA Modification Database
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
DNAmod
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
DNA modification database
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Other names: DNAmod, DNA modification database
Names
More detailed information about this field from each metasource.
DNA Modification Database
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
DNAmod
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
DNA modification database
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
Description
More detailed information about this field from each metasource.
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Covalent DNA modifications have been found in numerous organisms and more are continually being discovered and characterized, as detection methods improve. Many of these modifications can affect the conformation of the DNA double helix, often resulting in downstream effects upon transcription factor binding. Some of these modifications have been demonstrated to be stable, while others are viewed as merely transient. DNAmod catalogues information on known DNA modifications, of which the well-known 5-methylcytosine is only one. It aims to profile modifications' properties, building upon data contained within the Chemical Entities of Biological Interest (ChEBI) database. It also provides literature citations and includes curated annotations on mapping techniques and natural occurrence information.
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Webpage:
https://dnamod.hoffmanlab.org/Webpage
More detailed information about this field from each metasource.
https://dnamod.hoffmanlab.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
https://dnamod.hoffmanlab.org/index.html
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Licence:
Name: CCLicence name
More detailed information about this field from each metasource.
CC
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
DNAmod: the DNA modification database
PMID: 31016417
metasource: Fairsharing.org
version: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
DNAmod: the DNA modification database
PMID: 31016417
metasource: Fairsharing.org
version: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
-
DNAmod: the DNA modification database
PubMed citations: 23.
23 articles citing: DNAmod: the DNA modification database
MIAOME: Human microbiome affect the host epigenome. PMID:35664224
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers. PMID:35440061
Systematic Analysis and Accurate Identification of DNA N4-Methylcytosine Sites by Deep Learning. PMID:35401453
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling. PMID:35384842
Transcription factor specificity limits the number of DNA-binding motifs. PMID:35089985
Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures. PMID:34764310
Quantification and mapping of DNA modifications. PMID:34458826
Epitranscriptomic Modifications Modulate Normal and Pathological Functions in CNS. PMID:34224107
Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology. PMID:34132589
Beyond ribose and phosphate: Selected nucleic acid modifications for structure-function investigations and therapeutic applications. PMID:33981365
MODOMICS: An Operational Guide to the Use of the RNA Modification Pathways Database. PMID:33835459
Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. PMID:33624017
Elevated Levels of Oxidative Nucleic Acid Modification Markers in Urine From Gastric Cancer Patients: Quantitative Analysis by Ultra Performance Liquid Chromatography-Tandem Mass Spectrometry. PMID:33392149
Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts. PMID:32597959
Synthetic Biological Circuits within an Orthogonal Central Dogma. PMID:32586633
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning. PMID:32578842
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks. PMID:32423472
DNA N6-Methyladenine Modification in Plant Genomes-A Glimpse into Emerging Epigenetic Code. PMID:32075056
Methplotlib: analysis of modified nucleotides from nanopore sequencing. PMID:32053166
Latest techniques to study DNA methylation. PMID:31755932
A general strategy exploiting m5C duplex-remodelling effect for selective detection of RNA and DNA m5C methyltransferase activity in cells. PMID:31691820
Sequence and chromatin determinants of transcription factor binding and the establishment of cell type-specific binding patterns. PMID:31639474
MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae. PMID:31240103
Tags:
Tags
More detailed information about this field from each metasource.
nucleotide
metasource: Fairsharing.org
version: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
dna modification
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
epigenomics
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
nucleotide
metasource: Fairsharing.orgversion: FAIRsharing.org: DNAmod; DNA Modification Database; DOI: https://doi.org/10.25504/FAIRsharing.qgMKai; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
dna modification
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
epigenomics
metasource: re3data.orgversion: re3data.org: DNAmod; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8E last accessed: 2022-11-04
nucleotide dna modification bioinformatics epigenomics
Need help integrating and/or managing biomedical data?