RESID Database of Protein Modifications
Names
More detailed information about this field from each metasource.
RESID Database of Protein Modifications
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
RESID
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
RESID database of protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
resid
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
Names
More detailed information about this field from each metasource.
RESID Database of Protein Modifications
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
RESID
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
RESID database of protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
resid
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
Other names: RESID, RESID database of protein modifications, resid
Names
More detailed information about this field from each metasource.
RESID Database of Protein Modifications
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
RESID
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
RESID database of protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
resid
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.
Description
More detailed information about this field from each metasource.
The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
The RESID Database of Protein Modifications presents supplemental information on protein modifications appearing as standardized feature annotations in the UniProt Database. The RESID Database includes: systematic and frequently observed alternate names, Chemical Abstracts Service registry numbers, atomic formulas, masses and mass differences, enzyme activities, indicators for amino-terminal, carboxyl-terminal or peptide chain cross-link modifications, keywords, literature citations, database cross-references, structural diagrams and molecular models. Since 1995 the database has been released quarterly, with interim updates appearing as often as biweekly. The database is hosted at the European Bioinformatics Institute at http://www.ebi.ac.uk/RESID/ and at the National Cancer Institute Frederick Advanced Biomedical Computer Center at http://www.ncifcrf.gov/RESID/. A search facility using SRS is available at http://www.ebi.ac.uk/RESID/search.html. The database is freely accessible for FTP through the EBI at ftp://ftp.ebi.ac.uk/pub/databases/RESID or through the NCIFCRF at ftp://ftp.ncifcrf.gov/pub/users/residues/.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
Webpage:
http://pir.georgetown.edu/resid/Webpage
More detailed information about this field from each metasource.
http://pir.georgetown.edu/resid/
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
http://www.ebi.ac.uk/RESID/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
https://pir.georgetown.edu/resid/resid.shtml
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ODC
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
https://opendatacommons.org/licenses/pddl/1.0/
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The RESID Database of Protein Modifications as a resource and annotation tool
PMID: 15174122
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
The RESID Database of Protein Modifications: 2003 developments
PMID: 12520062
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1002/pmic.200300764
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
Publications
More detailed information about this field from each metasource.
The RESID Database of Protein Modifications as a resource and annotation tool
PMID: 15174122
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
The RESID Database of Protein Modifications: 2003 developments
PMID: 12520062
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1002/pmic.200300764
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
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The RESID Database of Protein Modifications as a resource and annotation tool
PubMed citations: 61.
61 articles citing: The RESID Database of Protein Modifications as a resource and annotation tool
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. PMID:35290070
SILIA-Based 4C Quantitative PTM Proteomics. PMID:34270050
Characterization of Phosphorylated Proteins Using Mass Spectrometry. PMID:33231146
Protein Acetylation/Deacetylation: A Potential Strategy for Fungal Infection Control. PMID:33133044
Regulatory effects of post-translational modifications on zDHHC S-acyltransferases. PMID:32817054
Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications. PMID:32639981
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks. PMID:32423472
Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle-Down Strategy. PMID:30063333
ProForma: A Standard Proteoform Notation. PMID:29397739
iPTMnet: an integrated resource for protein post-translational modification network discovery. PMID:29145615
Toxoplasma gondii and Neospora caninum induce different host cell responses at proteome-wide phosphorylation events; a step forward for uncovering the biological differences between these closely related parasites. PMID:28803361
biochem4j: Integrated and extensible biochemical knowledge through graph databases. PMID:28708831
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. PMID:28334105
UniProt: the universal protein knowledgebase. PMID:27899622
GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes. PMID:27630248
Common errors in mass spectrometry-based analysis of post-translational modifications. PMID:26667783
Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications. PMID:26265041
Mapping the SUMOylated landscape. PMID:26185901
Models of protein-ligand crystal structures: trust, but verify. PMID:25665575
Sulfenome mining in Arabidopsis thaliana. PMID:25049418
A controlled vocabulary for pathway entities and events. PMID:24951798
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins. PMID:24857970
SysPTM 2.0: an updated systematic resource for post-translational modification. PMID:24705204
Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data. PMID:24622611
Initial characterization of histone H3 serine 10 O-acetylation. PMID:23949383
Access guide to human proteinpedia. PMID:23504933
Isobar(PTM): a software tool for the quantitative analysis of post-translationally modified proteins. PMID:23470796
DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. PMID:23193290
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. PMID:23165928
BioJava: an open-source framework for bioinformatics in 2012. PMID:22877863
PILOT_PROTEIN: identification of unmodified and modified proteins via high-resolution mass spectrometry and mixed-integer linear optimization. PMID:22788846
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data. PMID:22465017
Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design. PMID:22431978
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. PMID:22159132
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations. PMID:22025670
Uncovering ubiquitin and ubiquitin-like signaling networks. PMID:22004258
Structure determination and interception of biosynthetic intermediates for the plantazolicin class of highly discriminating antibiotics. PMID:21950656
Substrate selectivity of the sublancin S-glycosyltransferase. PMID:21910430
A face in the crowd: recognizing peptides through database search. PMID:21876205
Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. PMID:20927658
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. PMID:20615486
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. PMID:20369061
Fast and efficient searching of biological data resources--using EB-eye. PMID:20150321
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications. PMID:20137074
A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry. PMID:20103568
From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase. PMID:20043185
AntigenDB: an immunoinformatics database of pathogen antigens. PMID:19820110
A guide to the Proteomics Identifications Database proteomics data repository. PMID:19662629
A comprehensive resource for integrating and displaying protein post-translational modifications. PMID:19549291
PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. PMID:18927104
Precision proteomics: the case for high resolution and high mass accuracy. PMID:18818311
Involvement of acidic fibroblast growth factor in spinal cord injury repair processes revealed by a proteomics approach. PMID:18482974
Framework for a protein ontology. PMID:18047702
ChEBI: a database and ontology for chemical entities of biological interest. PMID:17932057
Alternative Neisseria spp. type IV pilin glycosylation with a glyceramido acetamido trideoxyhexose residue. PMID:17804791
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. PMID:17690205
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. PMID:17391016
Crystallographic refinement of ligand complexes. PMID:17164531
Mass spectrometry-based proteomics and its application to studies of Porphyromonas gingivalis invasion and pathogenicity. PMID:16918489
PRIDE: a public repository of protein and peptide identifications for the proteomics community. PMID:16381953
dbPTM: an information repository of protein post-translational modification. PMID:16381945 -
The RESID Database of Protein Modifications: 2003 developments
PubMed citations: 4.
4 articles citing: The RESID Database of Protein Modifications: 2003 developments
Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides. PMID:26704149
Human Proteinpedia: a unified discovery resource for proteomics research. PMID:18948298
Human Proteinpedia as a resource for clinical proteomics. PMID:18573810
ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry. PMID:15215407 - http://dx.doi.org/10.1002/pmic.200300764
Tags:
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
small molecule
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein structure
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
proteomics resources
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genomes
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
life sciences
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
proteomes
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
protein structural motifs and surfaces
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:48.086297
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
small molecule
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RESID; RESID Database of Protein Modifications; DOI: https://doi.org/10.25504/FAIRsharing.qaszjp; Last edited: June 22, 2021, 11:58 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein structure
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
proteomics resources
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genomes
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
life sciences
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
proteomes
metasource: re3data.orgversion: re3data.org: RESID Database of Protein Modifications; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HP70 last accessed: 2022-11-04
protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
protein structural motifs and surfaces
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:48.086297
molecular structure protein small molecule structure structure protein structure proteomics resources genomes life sciences proteins proteomes protein modifications protein structural motifs and surfaces
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