DNA Methylation Database

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DNA Methylation Database

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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methdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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Other names: methdb

The database contains information about the occurrence of methylated cytosines in the DNA.

Webpage:

Publications:

Publications

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MethDB--a public database for DNA methylation data
PMID: 11125109

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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• MethDB--a public database for DNA methylation data PubMed citations: 34.

  34 articles citing: MethDB--a public database for DNA methylation data

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  The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates. PMID:35084499

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  Deep Learning for Human Disease Detection, Subtype Classification, and Treatment Response Prediction Using Epigenomic Data. PMID:34829962

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  scMethBank: a database for single-cell whole genome DNA methylation maps. PMID:34570235

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  MethHC 2.0: information repository of DNA methylation and gene expression in human cancer. PMID:33270889

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  Identification of four differentially methylated genes as prognostic signatures for stage I lung adenocarcinoma. PMID:29713243

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  MeDReaders: a database for transcription factors that bind to methylated DNA. PMID:29145608

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  The gymnastics of epigenomics in rice. PMID:28866772

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  Detection of methylation on dsDNA using nanopores in a MoS2 membrane. PMID:28795735

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  Molecular mechanisms underlying noncoding risk variations in psychiatric genetic studies. PMID:28044063

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  Integrating Epigenomics into the Understanding of Biomedical Insight. PMID:27980397

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  MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing. PMID:27924023

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  NGSmethDB 2017: enhanced methylomes and differential methylation. PMID:27794041

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  Methylation of a panel of genes in peripheral blood leukocytes is associated with colorectal cancer. PMID:27453436

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  Preservation of methylated CpG dinucleotides in human CpG islands. PMID:27005429

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  EpiFactors: a comprehensive database of human epigenetic factors and complexes. PMID:26153137

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  MethHC: a database of DNA methylation and gene expression in human cancer. PMID:25398901

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  MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. PMID:25294826

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  Methylation plotter: a web tool for dynamic visualization of DNA methylation data. PMID:25260021

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  NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes. PMID:24271385

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  EPITRANS: a database that integrates epigenome and transcriptome data. PMID:24213601

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  Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs. PMID:24149073

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  Combining position weight matrices and document-term matrix for efficient extraction of associations of methylated genes and diseases from free text. PMID:24147091

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  The correlation of genome size and DNA methylation rate in metazoans. PMID:23132463

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  Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844

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  The landscape for epigenetic/epigenomic biomedical resources. PMID:22874136

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  The emerging paradigm of network medicine in the study of human disease. PMID:22821909

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  HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PMID:22761927

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  Aberrant DNA methylation and prostate cancer. PMID:22547956

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  Reproducibility and concordance of differential DNA methylation and gene expression in cancer. PMID:22235325

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  Databases and bioinformatics tools for the study of DNA repair. PMID:22091405

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  Principles and challenges of genomewide DNA methylation analysis. PMID:20125086

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  DNA methylation signature analysis: how easy is it to perform? PMID:19183791

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  MeInfoText: associated gene methylation and cancer information from text mining. PMID:18194557

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  From bytes to bedside: data integration and computational biology for translational cancer research. PMID:17319736

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epigenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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dna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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methylated dna immunoprecipitation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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epigenetics dna methylated dna immunoprecipitation gene expression