Clusteval

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Clusteval

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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clusteval

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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Other names: clusteval

Free and extendable opensource platform for objective performance comparison of arbitrary Clustering Methods on different datasets.

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Publications:

Publications

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Comparing the performance of biomedical clustering methods
PMID: 26389570

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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• Comparing the performance of biomedical clustering methods PubMed citations: 59.

  59 articles citing: Comparing the performance of biomedical clustering methods

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  Computational analyses of mechanism of action (MoA): data, methods and integration. PMID:35360890

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  Challenges in translational machine learning. PMID:35246744

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  Unsupervised Algorithms for Microarray Sample Stratification. PMID:34902126

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  Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. PMID:34895139

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  Global changes in electricity consumption during COVID-19. PMID:34877481

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  Weighted Cox regression for the prediction of heterogeneous patient subgroups. PMID:34876106

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  Distance-based clustering challenges for unbiased benchmarking studies. PMID:34556686

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  Unsupervised Machine Learning to Identify Separable Clinical Alzheimer's Disease Sub-Populations. PMID:34439596

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  Clinical and biological clusters of sepsis patients using hierarchical clustering. PMID:34347776

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  Machine Learning in Epigenomics: Insights into Cancer Biology and Medicine. PMID:34245839

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  Spatially resolved 3D metabolomic profiling in tissues. PMID:33571119

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  Artificial Intelligence Pipeline to Bridge the Gap between Bench Researchers and Clinical Researchers in Precision Medicine. PMID:33511289

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  Identification of significantly mutated subnetworks in the breast cancer genome. PMID:33436820

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  BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis. PMID:33391870

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  Improving existing analysis pipeline to identify and analyze cancer driver genes using multi-omics data. PMID:33239644

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  ALICE: a hybrid AI paradigm with enhanced connectivity and cybersecurity for a serendipitous encounter with circulating hybrid cells. PMID:33042268

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  Hypercluster: a flexible tool for parallelized unsupervised clustering optimization. PMID:32993491

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  Spatial protein analysis in developing tissues: a sampling-based image processing approach. PMID:32829691

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  Obese-Inflammatory Phenotypes in Heart Failure With Preserved Ejection Fraction. PMID:32809874

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  SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters. PMID:32427564

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  A trainable clustering algorithm based on shortest paths from density peaks. PMID:32195334

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  Characterization of the Dynamic Behavior of Neutrophils Following Influenza Vaccination. PMID:31824481

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  Deep-learning approach to identifying cancer subtypes using high-dimensional genomic data. PMID:31603461

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  Defining subpopulations of differential drug response to reveal novel target populations. PMID:31602313

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  Using Large Datasets to Understand Nanotechnology. PMID:31429126

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  EPIC: software toolkit for elution profile-based inference of protein complexes. PMID:31308550

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  RAFTS3G: an efficient and versatile clustering software to analyses in large protein datasets. PMID:31307371

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  Essential guidelines for computational method benchmarking. PMID:31221194

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  The Application of Unsupervised Clustering Methods to Alzheimer's Disease. PMID:31178711

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  Evaluating measures of association for single-cell transcriptomics. PMID:30962620

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  Latent Model-Based Clustering for Biological Discovery. PMID:30954780

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  Clusterdv: a simple density-based clustering method that is robust, general and automatic. PMID:30407500

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  Overlapping clustering of gene expression data using penalized weighted normalized cut. PMID:30302823

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  A Large-Scale Gene Expression Intensity-Based Similarity Metric for Drug Repositioning. PMID:30267685

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  Clustering approaches for visual knowledge exploration in molecular interaction networks. PMID:30157777

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  Assisted gene expression-based clustering with AWNCut. PMID:30094873

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  Architecture of the Mouse Brain Synaptome. PMID:30078578

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  Nuclear Norm Clustering: a promising alternative method for clustering tasks. PMID:30022093

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  An unsupervised machine learning method for discovering patient clusters based on genetic signatures. PMID:30016722

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  Guiding biomedical clustering with ClustEval. PMID:29844526

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  Detecting complexes from edge-weighted PPI networks via genes expression analysis. PMID:29745859

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  ClueNet: Clustering a temporal network based on topological similarity rather than denseness. PMID:29738568

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  A comprehensive evaluation of module detection methods for gene expression data. PMID:29545622

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  Shrinkage Clustering: a fast and size-constrained clustering algorithm for biomedical applications. PMID:29361928

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  HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks. PMID:29315405

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  A network-based meta-analysis for characterizing the genetic landscape of human aging. PMID:29270911

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  De novo pathway-based biomarker identification. PMID:28934488

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  Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recovery. PMID:28842777

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  Assisted clustering of gene expression data using ANCut. PMID:28814280

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  Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. PMID:28753538

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  Health and Social-Physical Environment Profiles Among Older Adults Living Alone: Associations With Depressive Symptoms. PMID:28637214

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  Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome. PMID:28569836

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  Accounting for tumor purity improves cancer subtype classification from DNA methylation data. PMID:28472248

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  Clustering by fast search and merge of local density peaks for gene expression microarray data. PMID:28422088

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  SCOUT: simultaneous time segmentation and community detection in dynamic networks. PMID:27881879

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  Integrative classification of human coding and noncoding genes through RNA metabolism profiles. PMID:27870833

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  Multiparameter functional diversity of human C2H2 zinc finger proteins. PMID:27852650

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  multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles. PMID:27330269

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  densityCut: an efficient and versatile topological approach for automatic clustering of biological data. PMID:27153661

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systems biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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data management

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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computational biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:24.190821

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systems biology data management computational biology