COMBREX

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COMBREX

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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combrex

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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Other names: combrex

Computational Bridge to Experiments

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Publications

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
PMID: 21097892

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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http://nar.oxfordjournals.org/content/39/suppl_1/D11

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• COMBREX: a project to accelerate the functional annotation of prokaryotic genomes PubMed citations: 31.

  31 articles citing: COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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  The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function. PMID:30698741

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  Functional Annotation of a Presumed Nitronate Monoxygenase Reveals a New Class of NADH:Quinone Reductases. PMID:27502282

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  COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. PMID:26635392

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  Synthetic Ecology of Microbes: Mathematical Models and Applications. PMID:26522937

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  A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. PMID:26042526

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  Databases for Microbiologists. PMID:26013493

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  Sequencing and beyond: integrating molecular 'omics' for microbial community profiling. PMID:25915636

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  Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497

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  Towards an informative mutant phenotype for every bacterial gene. PMID:25112473

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  The combined structural and kinetic characterization of a bacterial nitronate monooxygenase from Pseudomonas aeruginosa PAO1 establishes NMO class I and II. PMID:25002579

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  LUD, a new protein domain associated with lactate utilization. PMID:24274019

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  PANADA: protein association network annotation, determination and analysis. PMID:24265686

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  Metabolic proximity in the order of colonization of a microbial community. PMID:24204896

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  The COMBREX project: design, methodology, and initial results. PMID:24013487

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  The other face of restriction: modification-dependent enzymes. PMID:23990325

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  Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori. PMID:23825549

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  Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes. PMID:23516388

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  Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships. PMID:23308060

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  EcoGene 3.0. PMID:23197660

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  Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. PMID:23111013

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  The methylomes of six bacteria. PMID:23034806

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  An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB. PMID:22962482

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  The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes. PMID:22693442

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  Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PMID:22675498

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  Accurate evaluation and analysis of functional genomics data and methods. PMID:22268703

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  Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819

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  CharProtDB: a database of experimentally characterized protein annotations. PMID:22140108

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  Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PMID:22125499

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  Inference of functional properties from large-scale analysis of enzyme superfamilies. PMID:22069325

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  COMBREX: COMputational BRidge to EXperiments. PMID:21428943

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  The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
• http://nar.oxfordjournals.org/content/39/suppl_1/D11

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protein sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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general sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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function analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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functional genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:22.439109

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protein sequence general sequence genomics function analysis functional genomics proteins