BioCatalogue
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The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Services in the BioCatalogue can be described and searched in multiple ways based upon their technical types, bioinformatics categories, user tags, service providers or data inputs and outputs. They are also subject to constant monitoring, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. The system is accessible via a human-readable ‘Web 2.0’-style interface and a programmatic Web Service interface. The BioCatalogue follows a community approach in which all services can be registered, browsed and incrementally documented with annotations by any member of the scientific community.
Description
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The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Services in the BioCatalogue can be described and searched in multiple ways based upon their technical types, bioinformatics categories, user tags, service providers or data inputs and outputs. They are also subject to constant monitoring, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. The system is accessible via a human-readable ‘Web 2.0’-style interface and a programmatic Web Service interface. The BioCatalogue follows a community approach in which all services can be registered, browsed and incrementally documented with annotations by any member of the scientific community.
metasource: Fairsharing.orgversion: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Webpage:
https://www.biocatalogue.org/Webpage
More detailed information about this field from each metasource.
https://www.biocatalogue.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence:
Name: BioCatalogue Terms of UseLicence name
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BioCatalogue Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence URL
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https://www.biocatalogue.org/termsofuse
metasource: Fairsharing.orgversion: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
BioCatalogue: a universal catalogue of web services for the life sciences
PMID: 20484378
metasource: Fairsharing.org
version: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications
More detailed information about this field from each metasource.
BioCatalogue: a universal catalogue of web services for the life sciences
PMID: 20484378
metasource: Fairsharing.org
version: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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BioCatalogue: a universal catalogue of web services for the life sciences
PubMed citations: 67.
67 articles citing: BioCatalogue: a universal catalogue of web services for the life sciences
Perspectives on automated composition of workflows in the life sciences. PMID:34804501
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. PMID:33849055
UCSF ChimeraX: Structure visualization for researchers, educators, and developers. PMID:32881101
Recognizing software names in biomedical literature using machine learning. PMID:31566474
U-Index, a dataset and an impact metric for informatics tools and databases. PMID:29557976
Using bio.tools to generate and annotate workbench tool descriptions. PMID:29333231
Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows. PMID:28809006
UCSF ChimeraX: Meeting modern challenges in visualization and analysis. PMID:28710774
Bridging the gap between climate models and impact studies: the FORESEE Database. PMID:28616227
ReGaTE: Registration of Galaxy Tools in Elixir. PMID:28402416
From the evaluation of existing solutions to an all-inclusive package for biobanks. PMID:28344915
Text mining resources for the life sciences. PMID:27888231
Biological Web Service Repositories Review. PMID:27783459
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology. PMID:27765035
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. PMID:26587054
Tools and data services registry: a community effort to document bioinformatics resources. PMID:26538599
Semantic biomedical resource discovery: a Natural Language Processing framework. PMID:26423616
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences. PMID:26401099
JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing. PMID:26280450
Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies. PMID:26125026
BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services. PMID:26032494
BioSWR--semantic web services registry for bioinformatics. PMID:25233118
Extracting patterns of database and software usage from the bioinformatics literature. PMID:25161253
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation. PMID:25068035
Processing biological literature with customizable Web services supporting interoperable formats. PMID:25006225
Explorative search of distributed bio-data to answer complex biomedical questions. PMID:24564278
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. PMID:24564249
Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance. PMID:24432050
BioServices: a common Python package to access biological Web Services programmatically. PMID:24064416
Analysis Tool Web Services from the EMBL-EBI. PMID:23671338
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. PMID:23640334
BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements. PMID:23635042
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
Towards the collaborative curation of the registry underlying Identifiers.org. PMID:23584831
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. PMID:23479348
Deploying and sharing U-Compare workflows as web services. PMID:23419017
MAPI: a software framework for distributed biomedical applications. PMID:23311574
Application of an integrative computational framework in trancriptomic data of atherosclerotic mice suggests numerous molecular players. PMID:23193398
Data management strategies for multinational large-scale systems biology projects. PMID:23047157
LibKiSAO: a Java library for Querying KiSAO. PMID:23006857
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. PMID:22693220
A query integrator and manager for the query web. PMID:22531831
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012. PMID:22508994
Tav4SB: integrating tools for analysis of kinetic models of biological systems. PMID:22480273
Scientific workflow management in proteomics. PMID:22411703
The automatic annotation of bacterial genomes. PMID:22408191
A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi. PMID:22272365
Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language. PMID:22172142
MetaBase--the wiki-database of biological databases. PMID:22139927
Computational toxicology using the OpenTox application programming interface and Bioclipse. PMID:22075173
MAPI: towards the integrated exploitation of bioinformatics Web Services. PMID:22032807
SegMine workflows for semantic microarray data analysis in Orange4WS. PMID:22029475
The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation. PMID:22024447
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. PMID:21969471
Persistence and availability of Web services in computational biology. PMID:21966383
Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics. PMID:21791100
SIDECACHE: Information access, management and dissemination framework for web services. PMID:21672219
Developing a kidney and urinary pathway knowledge base. PMID:21624162
Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA. PMID:21593132
HMMER web server: interactive sequence similarity searching. PMID:21593126
The BioExtract Server: a web-based bioinformatic workflow platform. PMID:21546552
KBWS: an EMBOSS associated package for accessing bioinformatics web services. PMID:21529350
SADI, SHARE, and the in silico scientific method. PMID:21210986
Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces. PMID:21059217
PDBe: Protein Data Bank in Europe. PMID:21045060
CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid. PMID:21044328
The EMBRACE web service collection. PMID:20462862
Tags:
Tags
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web service
metasource: Fairsharing.org
version: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Tags
More detailed information about this field from each metasource.
web service
metasource: Fairsharing.orgversion: FAIRsharing.org: BioCatalogue; BioCatalogue; DOI: https://doi.org/10.25504/FAIRsharing.9vT2Wg; Last edited: March 19, 2021, 1:18 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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