Allele frequency resource for research and teaching
Names
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Allele frequency resource for research and teaching
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
ALlele FREquency Database
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Allele frequency resource for research and teaching
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
ALlele FREquency Database
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Other names: ALFRED, ALlele FREquency Database
Names
More detailed information about this field from each metasource.
Allele frequency resource for research and teaching
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
ALlele FREquency Database
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
ALFRED is designed to make allele frequency data on human population samples readily available for use by the scientific and educational communities.
Description
More detailed information about this field from each metasource.
ALFRED is designed to make allele frequency data on human population samples readily available for use by the scientific and educational communities.
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED is a free, web-accessible, curated compilation of allele frequency data on DNA sequence polymorphisms in anthropologically defined human populations. ALFRED is distinct from such databases as dbSNP, which catalogs sequence variation.
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Webpage:
http://alfred.med.yale.eduWebpage
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http://alfred.med.yale.edu
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://alfred.med.yale.edu/alfred/index.asp
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Licence:
Name: Public DomainLicence name
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Public Domain
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Licence URL
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https://alfred.med.yale.edu/alfred/ALFREDpreview.asp
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
ALFRED: an allele frequency resource for research and teaching
PMID: 22039151
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms
PMID: 10592274
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED: the ALelle FREquency Database. Update
PMID: 12519999
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
ALFRED: an allele frequency resource for research and teaching
PMID: 22039151
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms
PMID: 10592274
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ALFRED: the ALelle FREquency Database. Update
PMID: 12519999
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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ALFRED: an allele frequency resource for research and teaching
PubMed citations: 33.
33 articles citing: ALFRED: an allele frequency resource for research and teaching
In-hospital use of ACE inhibitors/angiotensin receptor blockers associates with COVID-19 outcomes in African American patients. PMID:34411004
STAT3 polymorphisms in North Africa and its implication in breast cancer. PMID:34251094
Warriors, Worriers, and COVID-19: An Exploratory Study of the Catechol O-Methyltransferase Val158Met Polymorphism Across Populations. PMID:32879833
Differentiation of Hispanic biogeographic ancestry with 80 ancestry informative markers. PMID:32385290
Distribution of variants in multiple vitamin D-related loci (DHCR7/NADSYN1, GC, CYP2R1, CYP11A1, CYP24A1, VDR, RXRα and RXRγ) vary between European, East-Asian and Sub-Saharan African-ancestry populations. PMID:32169032
Complement Receptor 1 availability on red blood cell surface modulates Plasmodium vivax invasion of human reticulocytes. PMID:31221984
Restoration of HCV-Specific Immune Responses with Antiviral Therapy: A Case for DAA Treatment in Acute HCV Infection. PMID:30959825
Population genetic data of 30 insertion-deletion markers in Punjabi population of Pakistan. PMID:30820644
Frequency of I655V SNP of HER-2/neu in colorectal cancer: a study from India. PMID:30622849
Alcohol Dehydrogenases, Aldehyde Dehydrogenases, and Alcohol Use Disorders: A Critical Review. PMID:30320893
IL28B gene polymorphism rs12979860, but not rs8099917, contributes to the occurrence of chronic HCV infection in Uruguayan patients. PMID:29499724
Ancestry inference of 96 population samples using microhaplotypes. PMID:29248957
Evaluating genetic ancestry and self-reported ethnicity in the context of carrier screening. PMID:29179688
Multivariate association between single-nucleotide polymorphisms in Alzgene linkage regions and structural changes in the brain: discovery, refinement and validation. PMID:29091582
APOL1 risk alleles among individuals with CKD in Northern Tanzania: A pilot study. PMID:28732083
Parenting and adolescents' psychological adjustment: Longitudinal moderation by adolescents' genetic sensitivity. PMID:28027713
Visualizing the geography of genetic variants. PMID:27742697
Recent advances in the study of fine-scale population structure in humans. PMID:27662060
Case report: on the use of the HID-Ion AmpliSeq™ Ancestry Panel in a real forensic case. PMID:27470319
Proposed nomenclature for microhaplotypes. PMID:27316555
HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosis. PMID:25502817
DRD4 and susceptibility to peer influence on alcohol use from adolescence to adulthood. PMID:25457740
Text mining in cancer gene and pathway prioritization. PMID:25392685
Genetic ancestry influences asthma susceptibility and lung function among Latinos. PMID:25301036
Geographical and ethnic distribution of single nucleotide polymorphisms within genes of the folate/homocysteine pathway metabolism. PMID:25106483
Genome scans for detecting footprints of local adaptation using a Bayesian factor model. PMID:24899666
Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases. PMID:24552817
Single-nucleotide polymorphisms interact to affect ADH7 transcription. PMID:24512552
Single-nucleotide polymorphisms of the dopamine D2 receptor increase inflammation and fibrosis in human renal proximal tubule cells. PMID:24379187
Molecular evolution of genetic susceptibility to hepatocellular carcinoma. PMID:24357186
Inference of human continental origin and admixture proportions using a highly discriminative ancestry informative 41-SNP panel. PMID:23815888
Introducing the Forensic Research/Reference on Genetics knowledge base, FROG-kb. PMID:22938150
Beyond STRs: The Role of Diallelic Markers in Forensic Genetics. PMID:22851932 -
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms
PubMed citations: 31.
31 articles citing: ALFRED: an allele frequency database for diverse populations and DNA polymorphisms
Review of the Forensic Applicability of Biostatistical Methods for Inferring Ancestry from Autosomal Genetic Markers. PMID:35052480
Alu retrotransposons and COVID-19 susceptibility and morbidity. PMID:33390179
DNA identification of compromised samples with massive parallel sequencing. PMID:32002491
Assessment of the Association of D2 Dopamine Receptor Gene and Reported Allele Frequencies With Alcohol Use Disorders: A Systematic Review and Meta-analysis. PMID:31702801
Mixture deconvolution by massively parallel sequencing of microhaplotypes. PMID:30758713
Systematics for types and effects of DNA variations. PMID:30591019
A common copy-number variant within SIRPB1 correlates with human Out-of-Africa migration after genetic drift correction. PMID:29518122
Haplotype structure and positive selection at TLR1. PMID:24002163
Online biomedical resources for malaria-related red cell disorders. PMID:23568771
Genetic Diversity and Balancing Selection within the Human Phenylalanine Hydroxylase (PAH) Gene Region in Iranian Population. PMID:23113183
Phylogenetic relationship analysis of Iranians and other world populations using allele frequencies at 12 polymorphic markers. PMID:23065267
Introducing the Forensic Research/Reference on Genetics knowledge base, FROG-kb. PMID:22938150
A polymorphism in a let-7 microRNA binding site of KRAS in women with endometriosis. PMID:22307873
ALFRED: an allele frequency resource for research and teaching. PMID:22039151
Rare BRCA1 haplotypes including 3'UTR SNPs associated with breast cancer risk. PMID:21191178
Using a pharmacokinetic model to relate an individual's susceptibility to alcohol dependence to genotypes. PMID:20714161
A new analysis tool for individual-level allele frequency for genomic studies. PMID:20602748
Synopsis and data synthesis of genetic association studies in hypertension for the adrenergic receptor family genes: the CUMAGAS-HYPERT database. PMID:20044737
Semantic Web-based integration of cancer pathways and allele frequency data. PMID:19458791
Computing power and sample size for case-control association studies with copy number polymorphism: application of mixture-based likelihood ratio test. PMID:18941524
A SNP in a let-7 microRNA complementary site in the KRAS 3' untranslated region increases non-small cell lung cancer risk. PMID:18922928
Impact of BRAF, MLH1 on the incidence of microsatellite instability high colorectal cancer in populations based study. PMID:18718023
Linkage analysis of a complex disease through use of admixed populations. PMID:15131754
A SNP-centric database for the investigation of the human genome. PMID:15046636
Estimating effective population size or mutation rate with microsatellites. PMID:15020444
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. PMID:12519962
A step in another direction: looking for maternal genetic and environmental effects on racial differences in birth weight. PMID:11723954
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms--an update. PMID:11125124
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. PMID:11125123
Opportunities at the intersection of bioinformatics and health informatics: a case study. PMID:10984461
Haplotypes and linkage disequilibrium at the phenylalanine hydroxylase locus, PAH, in a global representation of populations. PMID:10788337 -
ALFRED: the ALelle FREquency Database. Update
PubMed citations: 28.
28 articles citing: ALFRED: the ALelle FREquency Database. Update
Environment and culture shape both the colour lexicon and the genetics of colour perception. PMID:34580373
Gut Hormones as Potential Therapeutic Targets or Biomarkers of Response in Depression: The Case of Motilin. PMID:34575041
The role of rs242941, rs1876828, rs242939 and rs110402 polymorphisms of CRHR1 gene and the depression: systematic review and meta-analysis. PMID:34279801
Tone and genes: New cross-linguistic data and methods support the weak negative effect of the "derived" allele of ASPM on tone, but not of Microcephalin. PMID:34191836
Evaluation of microhaplotypes in forensic kinship analysis from a Swedish population perspective. PMID:33506298
Integrating Linguistics, Social Structure, and Geography to Model Genetic Diversity within India. PMID:33481022
Alu retrotransposons and COVID-19 susceptibility and morbidity. PMID:33390179
Worldwide distribution of the DCDC2 READ1 regulatory element and its relationship with phoneme variation across languages. PMID:29666269
TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing. PMID:29642839
PUBLIC HEALTH AND EPIDEMIOLOGICAL DATABASES FOR THE ENHANCEMENT OF MEDICAL EDUCATION. PMID:26392847
A molecular basis for classic blond hair color in Europeans. PMID:24880339
Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PMID:24586184
Alcoholism and liver disease in Mexico: genetic and environmental factors. PMID:24307790
Significant association of KIR2DL3-HLA-C1 combination with cerebral malaria and implications for co-evolution of KIR and HLA. PMID:22412373
ALFRED: an allele frequency resource for research and teaching. PMID:22039151
Genetics of post-traumatic stress disorder: review and recommendations for genome-wide association studies. PMID:20549395
Single-nucleotide polymorphism bioinformatics: a comprehensive review of resources. PMID:20031630
Semantic Web-based integration of cancer pathways and allele frequency data. PMID:19458791
ALFRED: an allele frequency database for microevolutionary studies. PMID:19325849
An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. PMID:19091018
Keeping pace with ACE: are ACE inhibitors and angiotensin II type 1 receptor antagonists potential doping agents? PMID:19026021
A common haplotype of DRD3 affected by recent positive selection is associated with protection from schizophrenia. PMID:18987889
A lesson not learned: allele misassignment. PMID:18154681
Linguistic tone is related to the population frequency of the adaptive haplogroups of two brain size genes, ASPM and Microcephalin. PMID:17537923
Haplotype analysis at the alcohol dehydrogenase gene region in New Zealand Māori. PMID:17180580
MamPol: a database of nucleotide polymorphism in the Mammalia class. PMID:17142236
Reconstructing genetic ancestry blocks in admixed individuals. PMID:16773560
Polymorphix: a sequence polymorphism database. PMID:15608242
Tags:
Tags
More detailed information about this field from each metasource.
allele
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
allele frequency
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
chromosome
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
dna polymorphism
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
haplotype
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
human population
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
pathway
metasource: re3data.org
version: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
allele
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
allele frequency
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: ALFRED; Allele frequency resource for research and teaching; DOI: https://doi.org/10.25504/FAIRsharing.y2yct1; Last edited: July 16, 2019, 7:51 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
chromosome
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
dna polymorphism
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
haplotype
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
human population
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
pathway
metasource: re3data.orgversion: re3data.org: ALlele FREquency Database; editing status 2019-02-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GZ2J last accessed: 2022-11-04
allele allele frequency polymorphism chromosome dna polymorphism genetics genomics haplotype human population pathway
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