Tag: public health and epidemiology

A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes.

The Allele Frequency Net Database (AFND) provides the scientific community with a freely available repository for the storage of frequency data (alleles, genes, haplotypes and genotypes) related to human leukocyte antigens (HLA), killer-cell immunogl ...

The goal of Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the sci ...

The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional advice. The ITHANET Portal integrates information on news, events, clinical ...

Universal Mutation Database (UMD) is a database for mutations. UMD-predictor is a tool that enables functional annotation of variants to find the relevant ones.

Biomarkers of exposure to disease risk factors

a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data. MEGAResFrom MEG, the Microbial Ecology Group. Welcome to MEGARes: an Antimicrobial Database for High-Throughput Sequencing. ...

ClinEpiDB is an open-access online resource for clinical and epidemiologic studies. The website allows users to visualize and subset data directly in the ClinEpiDB browser and explore potential associations. Supporting study documentation aids contex ...

Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization.

DatAC (Data Against COVID-19), a data fusion project with an interactive web frontend that integrates COVID-19 and environmental data in Spain. DatAC is provided with powerful data analysis and statistical capabilities that allow users to explore and ...

The COVID-19 ontology covers the role of molecular and cellular entities in virus-host-interactions, in the virus life cycle, as well as a wide spectrum of medical and epidemiological concepts linked to COVID-19.

The FDA Adverse Event Reporting System (FAERS) is a database that contains information on adverse event and medication error reports submitted to FDA.

The GA4GH Toolkit outlines a suite of secure standards and frameworks that will enable more meaningful research and patient data harmonization and sharing. This suite addresses a variety of challenges across the data sharing life cycle and is applica ...

Base de Datos para la Investigación Farmacoepidemiológica en Atención Primaria (BIFAP) is a population based database administered by the AEMPS (Spanish Agency for Medicines) of longitudinal electronic medical records (EMR) of patients attended in pr ...

A Rapid and Accessible Tool That Exploits Genomic Data in Public Health and Clinical Microbiology Applications. Public databases for molecular typing and microbial genome diversity. A collection of open-access, curated databases that integrate popu ...

A Comprehensive Hepatitis D Virus Database. Welcome to Hepatitis Delta Virus Database (HDVdb). The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV genetic sequences that allows the researchers to investigate the genetic v ...

A comprehensive, annotated database of microsatellites. Multiple Loci VNTR Analysis databases and software. Multi Locus VNTR Analysis (MLVA) databases and software. MICAS 3.0, Microsatellite Analysis Server is the online repository of All Bacteria ...

Optimal allocation of HIV resources among geographical regions.

The NEW ESID online database network. European Society for Immunodeficiencies. Exchange of ideas and information among doctors, nurses, biomedical investigators, patients and their families concerned with primary immunodeficiency diseases (PID). E ...

A myocardial infarction risk knowledge base. Myocardial Infarction Risk Knowledge Base. MIRKB (the Myocardial Infarction Risk Knowledge Base) is a database that collected single factors, combined factors, and risk models which are article-supported ...

Data integration platform for molecular and clinical epidemiological analysis of tuberculosis.

The database of zoonotic and vector-borne viruses.

New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection.

EpiMetal is an open-source graphical web browser tool for easy statistical analyses in epidemiology and metabolomics.

cgMLST@Taiwan is a web service platform for Vibrio cholerae cgMLST profiling and global strain tracking.

A database for tracking the contribution of genomics and precision health to the COVID-19 pandemic response.

Is an online platform focuses on providing an up-to-date account of Botryosphaeriales with notes on orders, families and genera and species, keeping abreast of the current literature.

Tools for Influenza Activity and Surveillance. U.S. Influenza Surveillance System. Overview of Influenza Surveillance in the United States - CDC. Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People. ...

Global genomic population structure of Clostridioides difficile

open-access repository for surveys of antimicrobial resistance in animals.

ADVP is a platform for the public community to browse, search and understand Alzheimer's Disease genetics findings easily. .

Publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis.

An integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs).

CoxBase is an online platform for epidemiological surveillance, visualization, analysis and typing of Coxiella burnetii genomic sequence.

This website contains implementations of the MGT for various species. The MGT and metadata is searchable to allow identification of GTs associated with spatial, temporal or clinical characteristics.

United States Swine Pathogen Database is integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine.

a common data model for global HIV cohort collaboration. IeDEA International epidemiology Databases to Evaluate AIDS. REDCap Data Dictionaries for IeDEA. IeDEA is an international research consortium established in 2006 by the National Institute o ...

EpiGraphDB is an analytical platform and database to support data mining in epidemiology. The platform incorporates a graph of causal estimates generated by systematically applying Mendelian randomization to a wide array of phenotypes, and augments t ...

A21 Retrospectively describing hepatitis C virus transmission dynamics and tracking HCV transmission networks in real-time for strategic elimination interventions | Real-time tracking of pathogen evolution | Nextstrain is an open-source project to ha ...

Esc (Immune escape variants in SARS-CoV-2) is a comprehensive and manually curated compendium of genetic variants in SARS-CoV-2 associated with immune escape. The data on variants and associations have been compiled from published literature as well ...

AREAdata is a worldwide climate dataset averaged across spatial units at different scales through time. It is a PearseLab data resource where you can download daily estimates of climate/environmental data which have been averaged across different lev ...

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples. Plasmodium falciparum Community Project. Dried blood spot collection. Photo credit: Will Hamilton. HiSeq machines at the Wellcome Trust Sanger Institute. Photo c ...

A cross-sectional analysis of the emergency events database from a pediatric perspective. The international disasters database. Disaster group: Two main groups of disasters are distinguished in EM-DAT: natural disasters and technological disasters. ...

WHO Coronavirus (COVID-19) Dashboard With Vaccination Data presents official daily counts of COVID-19 cases and deaths worldwide, along with vaccination rates and other vaccination data, while providing a hub to other resources. Interactive tools, in ...