Tag: agricultural science

The Banana Genome Hub centralises databases of genetic and genomic data for the Musa acuminata crop, and is the official portal for the Musa genome resources.

Genome-wide plant promoter database for several plant species, including Arabidopsis thaliana, rice, poplar, and Physcomitrella patens.

COPO is a portal for plant scientists to describe, store and retrieve data more easily, using community standards and public repositories that enable the open sharing of results. COPO can link your outputs to your ORCiD profile. By tracking unique id ...

Plant metabolic, regulatory and signaling pathways

The Agronomic Linked Data (AgroLD) is a knowledge-based system relying on Semantic Web technologies and exploiting standard domain ontologies, which integrates data about plant species of high interest for the plant science community. AgroLD is an RD ...

A manually curated database for experimentally supported lncRNAs during various cancer metastatic events. A database for experimentally supported lncRNAs during various cancer metastatic events.

The CGDB (Coriander Genome Database) is mainly contained the coriander genome, transcriptome, and metabolome datasets

PPNID: a manually curated reference database and identification tool for plant-parasitic nematode.

An extensive database for pan-species microsatellite investigation and marker development. A Django app for Pan-Species Microsatellite Database. Pan-Species Microsatellite Database. Microsatellites (simple repeat sequences, SSRs or short tandem re ...

A database of Plant Chloroplast Inverted Repeats. Plant Chloroplast Inverted Repeats. Welcome to PCIR! Plant Chloroplast Inverted Repeats (PCIR) is an interactive, web-based platform containing various sequenced chloroplast genomes that enables det ...

ForageGrassBase is molecular resource for the forage grass meadow fescue (Festuca pratensis Huds.).

A portal for geographic reference data for the Amazon.

The Organonitrogen Degradation Database (ONDB) is used to catalog information about the cost, chemical properties, and biodegradation potential of commonly used organonitrogen compounds.

The Virtual Herbarium ALTB (Russian interface ) is the largest digital collection of plants from the transboundary territory of the Altai Mountain Country

Huanglongbing (HLB) is a tritrophic disease complex involving citrus host trees, the Asian citrus psyllid (ACP) insect and a phloem restricted, bacterial pathogen Candidatus Liberibacter asiaticus (CLas). HLB is considered to be the most devastating ...

Web-based platform of nucleotide sequence alignments of plants.

A dynamic, open and global database on crop pollination

A platform for virtual screening and computer-aided drug designing.

A comprehensive resource for kiwifruit genomics.

A public library of bat calls

TropGeneDB is a database that manages genomic, genetic and phenotypic information about tropical crops. It is organised on a crop basis.

A database for orchid genomics and molecular biology.

A web-based tool to access and analyse bacterial pesticidal proteins.

MPDB 2.0 contains more than 500 indigenous medicinal plants of Bangladesh. It encompasses the plants scientific name, family name, local names, utilized parts, active compounds and the PubMed IDs of related articles.

USDA, NIH and FDA Iodine Database of U.S. Foods for Estimating Iodine Intakes.

A comprehensive database for alternative splicing in tea plants (Camellia sinensis).

A Database of Regulatory SNPs for Agricultural Animal Species.

A knowledge database of dense granule proteins of the Apicomplexa.

User interface to data from high-throughput sequencing studies of fungal communities across terrestrial biomes. Includes sequencing data, sample locations, sample metadata.

The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations.

GGVD is a goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions.

Rhododendron Plant Genome Database (RPGD) is a comprehensive online omics database for Rhododendron.

A Database of Alfalfa-Bacterial Stem Blight Protein-Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria.

Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants.

The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources.

A method of using global evidence for local decision making. Metadataset (www.metadataset.com) is a collection of open data from scientific publications. These publications are about the management of agricultural and natural resources (e.g., crops, ...

The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world. The web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an imple ...

ZebraShare is intended to help establish fruitful collaborations by sharing mutant fish lines, and information about these mutants, particularly when authors do not otherwise see a clear path to publication.

The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.

Black Pepper Drought Transcriptome Database (BPDRTDb) catalogues all the genomic information like differential expressed genes, microsatellites, variants, transcriptional factors, pathways, domain and families of assembled transcriptome associated wi ...

This project aims at building an International Wheat Information System (WheatIS) to support the wheat research community. The main objective is to provide a single-access web based system to access to the available data resources and bioinformatics ...

CRITTERBASE, a publicly accessible data warehouse and interactive portal that currently hosts quality-controlled and taxonomically standardized presence/absence, abundance, and biomass data for 18,644 samples and 3,664 benthic taxa (2,824 of which at ...

A novel approach for validation and completeness of protein orthologous groups. A novel approach for validation and enrichment of protein orthologous groups. KusakiDB is a database of protein orthologous groups (OGs) that:.

The CerealESTdb, a user-friendly, searchable, and interactive database has been developed with a primary goal to provide information on assembled and annotated ESTs from four major crop plants, namely wheat, rice, maize, and sorghum under multiple en ...

RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultiva ...

The South Green Genome Hub is a suite of crop-specific community portals to manage genomic datasets with focus on tropical and Mediterranean plants. Currently developed on Banana, Cassava, Cacao, Coffee, Grass, Rice and Sugarcane, genome hubs provide ...

Plant Repeat Database (Plantre) provides re-annotated repeat sequences of plant using a uniform pipeline. The current version of plantrep contains 206.04Gb of 396,041,410 repeats from 459 species that were divided into 15 clades based on their phylog ...

A database storing SNPs and their predicted impact on transcription factor (TF) binding in promoter regions for different crops.

DetR DB is a database of ionizing radiation resistance determinants contains a comprehensive catalog of radioresistant microbes and their molecular and genetic determinants of enhanced ionizing radiation tolerance. The database provides search tools ...

FAIDARE: FAIR Data-finder for Agronomic Research. The purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories. It is based on the Breeding API (BrAPI) specificat ...

A cross-sectional analysis of the emergency events database from a pediatric perspective. The international disasters database. Disaster group: Two main groups of disasters are distinguished in EM-DAT: natural disasters and technological disasters. ...