myExperiment
myExperiment is a collaborative environment where scientists can safely publish their workflows and in silico experiments, share them with groups and find those of others. Workflows, other digital objects and bundles (called Packs) can now be swapped, sorted and searched like photos and videos on the Web.
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myExperiment is a collaborative environment where scientists can safely publish their workflows and in silico experiments, share them with groups and find those of others. Workflows, other digital objects and bundles (called Packs) can now be swapped, sorted and searched like photos and videos on the Web.
metasource: Fairsharing.orgversion: None
Webpage:
https://www.myexperiment.org/Webpage
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Publications
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myExperiment: a repository and social network for the sharing of bioinformatics workflows
PMID: 20501605
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
myExperiment: a repository and social network for the sharing of bioinformatics workflows
PMID: 20501605
metasource: Fairsharing.org
version: None
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myExperiment: a repository and social network for the sharing of bioinformatics workflows
PubMed citations: 69.
69 articles citing: myExperiment: a repository and social network for the sharing of bioinformatics workflows
Perspectives on automated composition of workflows in the life sciences. PMID:34804501
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. PMID:34749633
Toward more rigorous and informative nutritional epidemiology: The rational space between dismissal and defense of the status quo. PMID:34678079
Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey. PMID:34268467
FAIR digital objects in environmental and life sciences should comprise workflow operation design data and method information for repeatability of study setups and reproducibility of results. PMID:32815545
Publishing reproducible dynamic kinetic models. PMID:32793969
Organizing genome engineering for the gigabase scale. PMID:32019919
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv. PMID:31675414
BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows. PMID:31506435
Social support for collaboration and group awareness in life science research teams. PMID:31320922
Enabling precision medicine via standard communication of HTS provenance, analysis, and results. PMID:30596645
BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments. PMID:30186700
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks. PMID:29971009
GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline. PMID:29425291
Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services. PMID:29093641
Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows. PMID:28809006
Kronos: a workflow assembler for genome analytics and informatics. PMID:28655203
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. PMID:28582575
Improving data workflow systems with cloud services and use of open data for bioinformatics research. PMID:28419324
From the evaluation of existing solutions to an all-inclusive package for biobanks. PMID:28344915
Integration of EGA secure data access into Galaxy. PMID:28232859
Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations. PMID:27974626
Biological Web Service Repositories Review. PMID:27783459
Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns. PMID:27774140
Scientific workflows for bibliometrics. PMID:27122644
From the desktop to the grid: scalable bioinformatics via workflow conversion. PMID:26968893
An ISA-TAB-Nano based data collection framework to support data-driven modelling of nanotoxicology. PMID:26665069
Semantic biomedical resource discovery: a Natural Language Processing framework. PMID:26423616
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences. PMID:26401099
NCBI BLAST+ integrated into Galaxy. PMID:26336600
A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience. PMID:26306864
Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies. PMID:26125026
BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services. PMID:26032494
Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants. PMID:25977786
Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms. PMID:25887434
Multi-omic data analysis using Galaxy. PMID:25658277
WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare? PMID:25437808
Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses. PMID:25392756
Structuring research methods and data with the research object model: genomics workflows as a case study. PMID:25276335
Collaborative mining and interpretation of large-scale data for biomedical research insights. PMID:25268270
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems. PMID:25115331
Uniting cheminformatics and chemical theory to predict the intrinsic aqueous solubility of crystalline druglike molecules. PMID:24564264
Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles. PMID:24320595
Ten simple rules for reproducible computational research. PMID:24204232
KNIME-CDK: Workflow-driven cheminformatics. PMID:24103053
Analysis Tool Web Services from the EMBL-EBI. PMID:23671338
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. PMID:23640334
BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements. PMID:23635042
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
Where in the genome are we? A cautionary tale of database use in genomics research. PMID:23519237
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. PMID:23479348
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows. PMID:23286517
Semantically enabling a genome-wide association study database. PMID:23244533
Application of an integrative computational framework in trancriptomic data of atherosclerotic mice suggests numerous molecular players. PMID:23193398
A graph-based approach for designing extensible pipelines. PMID:22788675
Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support. PMID:22559942
Tav4SB: integrating tools for analysis of kinetic models of biological systems. PMID:22480273
Computational toxicology using the OpenTox application programming interface and Bioclipse. PMID:22075173
Tools and collaborative environments for bioinformatics research. PMID:21984743
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. PMID:21969471
Agile parallel bioinformatics workflow management using Pwrake. PMID:21899774
Channeling the data deluge. PMID:21623351
The BioExtract Server: a web-based bioinformatic workflow platform. PMID:21546552
Current trends and new challenges of databases and web applications for systems driven biological research. PMID:21423387
Linking the Resource Description Framework to cheminformatics and proteochemometrics. PMID:21388575
SADI, SHARE, and the in silico scientific method. PMID:21210986
Community-driven computational biology with Debian Linux. PMID:21210984
GPCRDB: information system for G protein-coupled receptors. PMID:21045054
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. PMID:20738864
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