ionomicHUB
Names
More detailed information about this field from each metasource.
ionomicHUB
metasource: Fairsharing.org
version: None
iHUB
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
IonomicHub
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Collaborative international network for ionomics
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
ionomicHUB
metasource: Fairsharing.orgversion: None
iHUB
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
IonomicHub
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Collaborative international network for ionomics
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Other names: iHUB, IonomicHub, Collaborative international network for ionomics
Names
More detailed information about this field from each metasource.
ionomicHUB
metasource: Fairsharing.orgversion: None
iHUB
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
IonomicHub
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Collaborative international network for ionomics
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
ionomicHUB provides curated ionomic data on many thousands of plant samples freely available to the public. It is an international collaborative cyber research environment to help identify and understand the genes and gene networks that function to control the ionome, the mineral nutrient and trace element composition of an organism or tissue. The iHUB is a collaborative workspace with components that integrate both cyberinfrastructure and human interactions to maximize both community access to ionomic resources, and knowledge extraction from these resources. An ongoing site migration has resulted in this resource being listed with an "In development" status.
Description
More detailed information about this field from each metasource.
ionomicHUB provides curated ionomic data on many thousands of plant samples freely available to the public. It is an international collaborative cyber research environment to help identify and understand the genes and gene networks that function to control the ionome, the mineral nutrient and trace element composition of an organism or tissue. The iHUB is a collaborative workspace with components that integrate both cyberinfrastructure and human interactions to maximize both community access to ionomic resources, and knowledge extraction from these resources. An ongoing site migration has resulted in this resource being listed with an "In development" status.
metasource: Fairsharing.orgversion: None
iHUB is a collaborative environment that supports research that relate to the genes and gene networks that control the ionomes, mineral nutrient, and trace element compositions of tissues and organisms. It provides tools to share data, literature, and coordinating collection efforts, among others. It contains ionomic data on more than 200.000 samples.
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Webpage:
https://www.ionomicshub.org/home/PiiMSWebpage
More detailed information about this field from each metasource.
https://www.ionomicshub.org/home/PiiMS
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Licence:
Name: University of Nottingham Terms of UseLicence name
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University of Nottingham Terms of Use
metasource: Fairsharing.orgversion: None
Copyrights
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Licence URL
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https://www.nottingham.ac.uk/utilities/terms.aspx
metasource: Fairsharing.orgversion: None
https://www.nottingham.ac.uk/utilities/copyright.aspx
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Purdue ionomics information management system. An integrated functional genomics platform
PMID: 17189337
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
Purdue ionomics information management system. An integrated functional genomics platform
PMID: 17189337
metasource: Fairsharing.org
version: None
-
Purdue ionomics information management system. An integrated functional genomics platform
PubMed citations: 51.
51 articles citing: Purdue ionomics information management system. An integrated functional genomics platform
Loss of SALT OVERLY SENSITIVE 1 prevents virescence in chloroplast K+/H+ EFFLUX ANTIPORTER-deficient mutants. PMID:35325208
Magnesium and calcium overaccumulate in the leaves of a schengen3 mutant of Brassica rapa. PMID:33831190
Disease Ionomics: Understanding the Role of Ions in Complex Disease. PMID:33212764
Extraction and Integration of Genetic Networks from Short-Profile Omic Data Sets. PMID:33137869
Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L. PMID:30386356
AtHMA4 Drives Natural Variation in Leaf Zn Concentration of Arabidopsis thaliana. PMID:29545819
Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics. PMID:29187860
Non-Specific Root Transport of Nutrient Gives Access to an Early Nutritional Indicator: The Case of Sulfate and Molybdate. PMID:27870884
Into the Wild: Oryza Species as Sources for Enhanced Nutrient Accumulation and Metal Tolerance in Rice. PMID:27446193
Proteomics, metabolomics, and ionomics perspectives of salinity tolerance in halophytes. PMID:26284080
Caspary's conductor. PMID:26283383
A software tool for the input and management of phenotypic data using personal digital assistants and other mobile devices. PMID:25866550
Genome-wide association mapping identifies a new arsenate reductase enzyme critical for limiting arsenic accumulation in plants. PMID:25464340
Variation in sulfur and selenium accumulation is controlled by naturally occurring isoforms of the key sulfur assimilation enzyme ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE2 across the Arabidopsis species range. PMID:25245030
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. PMID:25082855
Dissection of the control of anion homeostasis by associative transcriptomics in Brassica napus. PMID:25049360
Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser. PMID:24922320
The zinc transporter Zip5 (Slc39a5) regulates intestinal zinc excretion and protects the pancreas against zinc toxicity. PMID:24303081
Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere. PMID:24143806
In silico ionomics segregates parasitic from free-living eukaryotes. PMID:24048281
Clioquinol synergistically augments rescue by zinc supplementation in a mouse model of acrodermatitis enteropathica. PMID:24015258
Methodological approaches for using synchrotron X-ray fluorescence (SXRF) imaging as a tool in ionomics: examples from Arabidopsis thaliana. PMID:23912758
Roles of plant metal tolerance proteins (MTP) in metal storage and potential use in biofortification strategies. PMID:23717323
Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions. PMID:23671651
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. PMID:23471459
Natural variation of Arabidopsis root architecture reveals complementing adaptive strategies to potassium starvation. PMID:23329148
Loss of function of Arabidopsis C-terminal domain phosphatase-like1 activates iron deficiency responses at the transcriptional level. PMID:23144187
Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. PMID:22969436
Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana. PMID:22558123
Web-based Arabidopsis functional and structural genomics resources. PMID:22303243
Mapping of ionomic traits in Mimulus guttatus reveals Mo and Cd QTLs that colocalize with MOT1 homologues. PMID:22292026
Structure and evolution of the plant cation diffusion facilitator family of ion transporters. PMID:21435223
Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana. PMID:21421810
Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in Arabidopsis. PMID:21258004
Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants. PMID:21224340
A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. PMID:21085628
Growth performance and root transcriptome remodeling of Arabidopsis in response to Mars-like levels of magnesium sulfate. PMID:20808807
Caesium and strontium accumulation in shoots of Arabidopsis thaliana: genetic and physiological aspects. PMID:20624763
Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences. PMID:20559418
Comparative physiology of elemental distributions in plants. PMID:20410048
A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments. PMID:19966073
The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis. PMID:19861554
Genetic analysis of potassium use efficiency in Brassica oleracea. PMID:19815571
Iron uptake and transport in plants: the good, the bad, and the ionome. PMID:19754138
Phenome analysis in plant species using loss-of-function and gain-of-function mutants. PMID:19502383
Ionomics: studying the social network of mineral nutrients. PMID:19481970
Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. PMID:19461889
Using synchrotron X-ray fluorescence microprobes in the study of metal homeostasis in plants. PMID:19182222
The leaf ionome as a multivariable system to detect a plant's physiological status. PMID:18697928
Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1). PMID:18454190
Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. PMID:18281414
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gene
metasource: Fairsharing.org
version: None
protein interaction
metasource: Fairsharing.org
version: None
arabidopsis
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
arabidopsis thaliana research
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
botany
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
brassica
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
corn research
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
maize
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
nature and nurture
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
plants
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
rice research
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
soybean research
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
yeast fungi
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
yeast research
metasource: re3data.org
version: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: None
protein interaction
metasource: Fairsharing.orgversion: None
arabidopsis
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
arabidopsis thaliana research
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
botany
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
brassica
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
corn research
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
maize
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
nature and nurture
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
plants
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
rice research
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
soybean research
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
yeast fungi
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
yeast research
metasource: re3data.orgversion: re3data.org: IonomicHub; editing status 2021-05-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3BS63 last accessed: 2022-11-04
gene protein interaction arabidopsis arabidopsis thaliana research botany brassica corn research maize nature and nurture plants rice research soybean research yeast fungi yeast research
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