SURFACE
SURFACE is a database containing the results of a large-scale protein annotation and local structural comparison project. The homepage of the resource has not been updated since 2003 (and the maintainer's website since 2010). Until we have confirmation of the status of this project, we have classified it as uncertain.
Description
More detailed information about this field from each metasource.
SURFACE is a database containing the results of a large-scale protein annotation and local structural comparison project. The homepage of the resource has not been updated since 2003 (and the maintainer's website since 2010). Until we have confirmation of the status of this project, we have classified it as uncertain.
metasource: Fairsharing.orgversion: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Webpage:
http://cbm.bio.uniroma2.it/surfaceWebpage
More detailed information about this field from each metasource.
http://cbm.bio.uniroma2.it/surface
metasource: Fairsharing.orgversion: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
SURFACE: a database of protein surface regions for functional annotation
PMID: 14681403
metasource: Fairsharing.org
version: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
SURFACE: a database of protein surface regions for functional annotation
PMID: 14681403
metasource: Fairsharing.org
version: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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SURFACE: a database of protein surface regions for functional annotation
PubMed citations: 20.
20 articles citing: SURFACE: a database of protein surface regions for functional annotation
Diffusion accessibility as a method for visualizing macromolecular surface geometry. PMID:26189444
Computational methods in drug discovery. PMID:24381236
Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison. PMID:22275074
Structure- and sequence-based function prediction for non-homologous proteins. PMID:22270458
Protein surface characterization using an invariant descriptor. PMID:22144981
Binding ligand prediction for proteins using partial matching of local surface patches. PMID:21614188
Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites. PMID:21342566
3V: cavity, channel and cleft volume calculator and extractor. PMID:20478824
Real-time ligand binding pocket database search using local surface descriptors. PMID:20455259
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity. PMID:19603073
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. PMID:19543979
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns. PMID:19406922
In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution. PMID:19136663
Application of new multi-resolution methods for the comparison of biomolecular electrostatic properties in the absence of global structural similarity. PMID:18841247
Bridging protein local structures and protein functions. PMID:18421562
Predicting gene ontology functions from protein's regional surface structures. PMID:18070366
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites. PMID:17430569
SUPERFICIAL--surface mapping of proteins via structure-based peptide library design. PMID:16153304
Functional annotation by identification of local surface similarities: a novel tool for structural genomics. PMID:16076399
pdbFun: mass selection and fast comparison of annotated PDB residues. PMID:15980442
Tags:
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: SURFACE; SURFACE; DOI: https://doi.org/10.25504/FAIRsharing.tbkzda; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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