RiceXPro

Names
More detailed information about this field from each metasource.

RiceXPro
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

ricexpro
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

Other names: ricexpro

Rice transcriptome under natural conditions

Webpage:

http://ricexpro.dna.affrc.go.jp/

Publications:

Publications
More detailed information about this field from each metasource.

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions
PMID: 21045061
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

http://nar.oxfordjournals.org/content/39/suppl_1/D1141
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions PubMed citations: 100.

100 articles citing: RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

Genome-Wide Association Study of the Genetic Basis of Effective Tiller Number in Rice. PMID:34170442
Transcriptome-based approaches for clarification of nutritional responses and improvement of crop production. PMID:33762878
Genome-wide analysis of spatiotemporal expression patterns during rice leaf development. PMID:33750294
Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice. PMID:33547986
Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice. PMID:33467721
Targeted Transgene Expression in Rice Using a Callus Strong Promoter for Selectable Marker Gene Control. PMID:33362834
A fast, efficient and high-throughput procedure involving laser microdissection and RT droplet digital PCR for tissue-specific expression profiling of rice roots. PMID:33302866
Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice. PMID:33211715
Transcriptome and Gene Editing Analyses Reveal MOF1a Defect Alters the Expression of Genes Associated with Tapetum Development and Chromosome Behavior at Meiosis Stage Resulting in Low Pollen Fertility of Tetraploid Rice. PMID:33050591
Evolution of Abscisic Acid Signaling for Stress Responses to Toxic Metals and Metalloids. PMID:32765540
Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice. PMID:32494867
Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDα1) of wild Oryza species implies to its low expression in rice bran. PMID:32313086
Transcriptomic Insights into Mechanisms of Early Seed Maturation in the Garden Pea (Pisum sativum L.). PMID:32210065
Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.). PMID:32153645
Suppression of Melatonin 2-Hydroxylase Increases Melatonin Production Leading to the Enhanced Abiotic Stress Tolerance against Cadmium, Senescence, Salt, and Tunicamycin in Rice Plants. PMID:31597397
OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice. PMID:31552586
Genome-wide analysis of the rice J-protein family: identification, genomic organization, and expression profiles under multiple stresses. PMID:31544012
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice. PMID:31481833
The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism. PMID:31416828
Genetic dissection of developmental responses of agro-morphological traits under different doses of nutrient fertilizers using high-density SNP markers. PMID:31335882
A web-based tool for the prediction of rice transcription factor function. PMID:31169887
Recent advances in the characterization of plant transcriptomes in response to drought, salinity, heat, and cold stress. PMID:31131087
Detection of stable QTLs for grain protein content in rice (Oryza sativa L.) employing high throughput phenotyping and genotyping platforms. PMID:30824776
The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination. PMID:30669630
Development of transgenic male-sterile rice by using anther-specific promoters identified by comprehensive screening of the gene expression profile database 'RiceXPro'. PMID:30369816
Pathway Editing Targets for Thiamine Biofortification in Rice Grains. PMID:30042775
Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry. PMID:29991484
Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance. PMID:29915249
ARMOUR - A Rice miRNA: mRNA Interaction Resource. PMID:29868062
In Silico Analysis of Natural Resistance-Associated Macrophage Protein (NRAMP) Family of Transporters in Rice. PMID:29785641
Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance. PMID:29335785
High Temperature-Induced Expression of Rice α-Amylases in Developing Endosperm Produces Chalky Grains. PMID:29270189
Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles. PMID:29086189
RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement. PMID:28964253
Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice. PMID:28830102
Molecular bases for differential aging programs between flag and second leaves during grain-filling in rice. PMID:28821707
Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data. PMID:28768814
An integrated hyperspectral imaging and genome-wide association analysis platform provides spectral and genetic insights into the natural variation in rice. PMID:28667309
Assessment of Five Chilling Tolerance Traits and GWAS Mapping in Rice Using the USDA Mini-Core Collection. PMID:28642772
Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice. PMID:28510861
Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice. PMID:28499072
The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling. PMID:27330561
Comparative Transcriptional Profiling of Melatonin Synthesis and Catabolic Genes Indicates the Possible Role of Melatonin in Developmental and Stress Responses in Rice. PMID:27242875
Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice. PMID:27234238
Are Symbiotic Methanotrophs Key Microbes for N Acquisition in Paddy Rice Root? PMID:26960961
Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease. PMID:26879413
Nucleolar DEAD-Box RNA Helicase TOGR1 Regulates Thermotolerant Growth as a Pre-rRNA Chaperone in Rice. PMID:26848586
Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm. PMID:26792122
Detection of QTLs for cold tolerance of rice cultivar 'Kuchum' and effect of QTL pyramiding. PMID:26747044
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. PMID:26744119
Information Commons for Rice (IC4R). PMID:26519466
Transgenic rice seed expressing flavonoid biosynthetic genes accumulate glycosylated and/or acylated flavonoids in protein bodies. PMID:26438413
"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases. PMID:26241330
A Novel Gene, OZONE-RESPONSIVE APOPLASTIC PROTEIN1, Enhances Cell Death in Ozone Stress in Rice. PMID:26220952
Generation of transgenic rice with reduced content of major and novel high molecular weight allergens. PMID:26055998
Comparative Transcriptomics of Sijung and Jumli Marshi Rice during Early Chilling Stress Imply Multiple Protective Mechanisms. PMID:25973918
Marker-assisted breeding of a LOX-3-null rice line with improved storability and resistance to preharvest sprouting. PMID:25917598
Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds? PMID:25732383
Metabolic and co-expression network-based analyses associated with nitrate response in rice. PMID:25471115
Rice chalky ring formation caused by temporal reduction in starch biosynthesis during osmotic adjustment under foehn-induced dry wind. PMID:25330305
OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice. PMID:25081037
Changes in primary and secondary metabolite levels in response to gene targeting-mediated site-directed mutagenesis of the anthranilate synthase gene in rice. PMID:24957777
Identification and functional characterization of sorbitol-6-phosphate dehydrogenase protein from rice and structural elucidation by in silico approach. PMID:24817585
RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions. PMID:24742282
A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input. PMID:24441161
The knockdown of OsVIT2 and MIT affects iron localization in rice seed. PMID:24280309
The Rice Oligonucleotide Array Database: an atlas of rice gene expression. PMID:24279809
Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation. PMID:24253678
Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice. PMID:24223786
Organ- and stress-specific expression of the ASR genes in rice. PMID:24085307
Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence. PMID:24028154
Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress. PMID:23852542
Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice. PMID:23629836
DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants. PMID:23586618
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics. PMID:23299411
RiceFREND: a platform for retrieving coexpressed gene networks in rice. PMID:23180784
RiceXPro version 3.0: expanding the informatics resource for rice transcriptome. PMID:23180765
The role of heavy-metal ATPases, HMAs, in zinc and cadmium transport in rice. PMID:23072989
Transcriptional network analysis of the tryptophan-accumulating rice mutant during grain filling. PMID:22836167
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots. PMID:22807623
A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley. PMID:22791834
OsNRAMP5, a major player for constitutive iron and manganese uptake in rice. PMID:22751306
Identification of grass-specific enzyme that acylates monolignols with p-coumarate. PMID:22267741
Short grain1 decreases organ elongation and brassinosteroid response in rice. PMID:22209874
Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains. PMID:22160725
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, 'Lijiangxintuanheigu', in rice, Oryza sativa L. PMID:22113591
A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice. PMID:22101345
Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice. PMID:22067109
Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PMID:22046259
Identification and characterization of the major mitochondrial Fe transporter in rice. PMID:21921696
A wheat homolog of MOTHER OF FT AND TFL1 acts in the regulation of germination. PMID:21896881
Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.). PMID:21795261
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. PMID:21729923
The rice mitochondrial iron transporter is essential for plant growth. PMID:21610725
The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions. PMID:21551283
Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. PMID:21441235
Distinct roles of protein disulfide isomerase and P5 sulfhydryl oxidoreductases in multiple pathways for oxidation of structurally diverse storage proteins in rice. PMID:21278127
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. PMID:21226959
Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics. PMID:21216747
http://nar.oxfordjournals.org/content/39/suppl_1/D1141

Tags:

Tags
More detailed information about this field from each metasource.

plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

rice
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

surgery
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.822342

plant rice gene expression plant biology model organisms surgery gene transcripts

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Rice Pipeline

RiceFREND

Rice Proteome Database

RiceGAAS

rOGED

Rice Annotation Database

Information Commons for Rice

MGI Mouse Gene Expression Database

PEATmoss

Expression Atlas

RAP-DB

Rice Gene Thresher

CleanEx

VariED

Gene Expression Omnibus

Beijing Genomics Institute Rice Information System

Bgee DataBase for Gene Expression Evolution

Chickspress

Rice Mutant Database

miRGator v2.0