FAIRsharing.k1p51k; Last edited: April 26, 2021, 9:19 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

CleanEx database of gene expression profiles
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:10.516105

cleanex
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:10.516105

Other names: CleanEx database of gene expression profiles, cleanex

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CleanEx is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons.

Webpage:

http://www.cleanex.isb-sib.ch/

Publications:

Publications
More detailed information about this field from each metasource.

CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature
PMID: 14681477
metasource: Fairsharing.org
version: FAIRsharing.org: CleanEx; CleanEx; DOI: https://doi.org/10.25504/FAIRsharing.k1p51k; Last edited: April 26, 2021, 9:19 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1093/nar/gkn878
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:10.516105

CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature PubMed citations: 26.

26 articles citing: CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature

Protein Bioinformatics Databases and Resources. PMID:28150231
Dysregulation of MALAT1 and miR-619-5p as a prognostic indicator in advanced colorectal carcinoma. PMID:28101234
Tumor-suppressive function of long noncoding RNA MALAT1 in glioma cells by suppressing miR-155 expression and activating FBXW7 function. PMID:27904771
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
Long non-coding RNA metastasis associated in lung adenocarcinoma transcript 1 (MALAT1) interacts with estrogen receptor and predicted poor survival in breast cancer. PMID:27191888
Systems Perturbation Analysis of a Large-Scale Signal Transduction Model Reveals Potentially Influential Candidates for Cancer Therapeutics. PMID:26904540
Genome-wide gene expression profiling to predict resistance to anthracyclines in breast cancer patients. PMID:26484051
Downregulation of long noncoding RNA MALAT1 induces epithelial-to-mesenchymal transition via the PI3K-AKT pathway in breast cancer. PMID:26191181
Long noncoding RNA MALAT1 associates with the malignant status and poor prognosis in glioma. PMID:25613066
High expression of lncRNA MALAT1 suggests a biomarker of poor prognosis in colorectal cancer. PMID:25031737
MALAT1 -- a paradigm for long noncoding RNA function in cancer. PMID:23529762
Deriving transcriptional programs and functional processes from gene expression databases. PMID:22408194
In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer. PMID:21923952
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
Can survival prediction be improved by merging gene expression data sets? PMID:19851466
Meta Analysis of Gene Expression Data within and Across Species. PMID:19516959
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. PMID:19379481
CleanEx: new data extraction and merging tools based on MeSH term annotation. PMID:19073704
Navigating public microarray databases. PMID:18629145
Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen. PMID:18498629
Indexing strategies for rapid searches of short words in genome sequences. PMID:17593978
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. PMID:17430561
EPD in its twentieth year: towards complete promoter coverage of selected model organisms. PMID:16381980
Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes. PMID:15882471
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. PMID:15608201
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. PMID:14681364
http://dx.doi.org/10.1093/nar/gkn878

Tags:

Tags
More detailed information about this field from each metasource.

gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: CleanEx; CleanEx; DOI: https://doi.org/10.25504/FAIRsharing.k1p51k; Last edited: April 26, 2021, 9:19 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:10.516105

gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:10.516105

gene expression microarray data and other gene expression transcriptomics gene and protein families

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