Gene Expression Barcode

Names
More detailed information about this field from each metasource.

Gene Expression Barcode
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

gene_expression_barcode
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

Other names: gene_expression_barcode

This source may no longer be available. No known URL could be resolved successfully.

Gene expression data sorted into two groups: expressed and not expressed genes

Webpage:

http://barcode.luhs.org/

Publications:

Publications
More detailed information about this field from each metasource.

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
PMID: 21177656
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

http://dx.doi.org/10.1093/nar/gkt1204
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes PubMed citations: 101.

101 articles citing: The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

Gene network modeling via TopNet reveals functional dependencies between diverse tumor-critical mediator genes. PMID:34936873
Whole-Genome Sequencing Reveals Exonic Variation of ASIC5 Gene Results in Recurrent Pregnancy Loss. PMID:34395479
Omics community detection using multi-resolution clustering. PMID:33974004
Blind normalization of public high-throughput databases. PMID:33816884
Nucleolin acts as the receptor for C1QTNF4 and supports C1QTNF4-mediated innate immunity modulation. PMID:33676896
Gene expression barcode values reveal a potential link between Parkinson's disease and gastric cancer. PMID:33596182
DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. PMID:33571201
A dynamic multi-tissue model to study human metabolism. PMID:33483512
SFRP4 drives invasion in gastric cancer and is an early predictor of recurrence. PMID:33277667
Methods for correcting inference based on outcomes predicted by machine learning. PMID:33208538
Identification of novel genes associated with dysregulation of B cells in patients with primary Sjögren's syndrome. PMID:32571405
Cryo-EM structure of rhinovirus C15a bound to its cadherin-related protein 3 receptor. PMID:32152109
The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer. PMID:31871106
Cancer targeting by TCR gene-engineered T cells directed against Kita-Kyushu Lung Cancer Antigen-1. PMID:31455429
A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism. PMID:31009458
An integrative method to predict signalling perturbations for cellular transitions. PMID:30949696
An integrative tissue-network approach to identify and test human disease genes. PMID:30346941
A Gene Expression Signature Predicts Bladder Cancer Cell Line Sensitivity to EGFR Inhibition. PMID:30112438
The relative resistance of children to sepsis mortality: from pathways to drug candidates. PMID:29773677
Two-phase differential expression analysis for single cell RNA-seq. PMID:29688282
Digitizing omics profiles by divergence from a baseline. PMID:29666255
Interleukin-18 diagnostically distinguishes and pathogenically promotes human and murine macrophage activation syndrome. PMID:29326099
Systematic target function annotation of human transcription factors. PMID:29325558
A Whole Blood Molecular Signature for Acute Myocardial Infarction. PMID:28947747
Toward the human cellular microRNAome. PMID:28877962
An analysis of gene expression data involving examination of signaling pathways activation reveals new insights into the mechanism of action of minoxidil topical foam in men with androgenetic alopecia. PMID:28594262
An esophageal squamous cell carcinoma classification system that reveals potential targets for therapy. PMID:28591712
Identification of differentially-expressed genes between early-stage adenocarcinoma and squamous cell carcinoma lung cancer using meta-analysis methods. PMID:28521438
Comparative transcriptomics in human and mouse. PMID:28479595
RAG Recombinase as a Selective Pressure for Genome Evolution. PMID:27979968
Path2enet: generation of human pathway-derived networks in an expression specific context. PMID:27801297
Estimation of Gene Regulatory Networks. PMID:27595119
CYR61 and TAZ Upregulation and Focal Epithelial to Mesenchymal Transition May Be Early Predictors of Barrett's Esophagus Malignant Progression. PMID:27583562
Gene-specific patterns of expression variation across organs and species. PMID:27391956
Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method. PMID:27145226
Identifying gene expression modules that define human cell fates. PMID:27108395
FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases. PMID:27060136
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. PMID:26989145
An interactive web-based application for Comprehensive Analysis of RNAi-screen Data. PMID:26902267
Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms. PMID:26834640
The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription. PMID:26797124
Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network. PMID:26480823
Epiviz: a view inside the design of an integrated visual analysis software for genomics. PMID:26328750
Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia. PMID:26171964
Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis. PMID:26078586
Enriched transcription factor signatures in triple negative breast cancer indicates possible targeted therapies with existing drugs. PMID:26005638
Test on existence of histology subtype-specific prognostic signatures among early stage lung adenocarcinoma and squamous cell carcinoma patients using a Cox-model based filter. PMID:25887039
A melanoma subtype with intrinsic resistance to BRAF inhibition identified by receptor tyrosine kinases gene-driven classification. PMID:25742786
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329
Measuring the effect of inter-study variability on estimating prediction error. PMID:25330348
PROPER: comprehensive power evaluation for differential expression using RNA-seq. PMID:25273110
LncRBase: an enriched resource for lncRNA information. PMID:25233092
Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors. PMID:25191524
In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes. PMID:25093336
Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation. PMID:25091430
Epiviz: interactive visual analytics for functional genomics data. PMID:25086505
Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease. PMID:25017104
Post-transcriptional regulation of BCL2 mRNA by the RNA-binding protein ZFP36L1 in malignant B cells. PMID:25014217
On integrating multi-experiment microarray data. PMID:24751870
Transcriptional dissection of pancreatic tumors engrafted in mice. PMID:24739241
Transcript analysis reveals a specific HOX signature associated with positional identity of human endothelial cells. PMID:24651450
Linking tissues to phenotypes using gene expression profiles. PMID:24634472
Utility of network integrity methods in therapeutic target identification. PMID:24550933
A feedforward regulatory loop between HuR and the long noncoding RNA linc-MD1 controls early phases of myogenesis. PMID:24440503
Determinants of expression variability. PMID:24435799
On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior. PMID:24376454
The Gene Expression Barcode 3.0: improved data processing and mining tools. PMID:24271388
A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations. PMID:24241537
Reassessing target antigens for adoptive T-cell therapy. PMID:24142051
Multiplatform single-sample estimates of transcriptional activation. PMID:24128763
A minimal set of tissue-specific hypomethylated CpGs constitute epigenetic signatures of developmental programming. PMID:24069155
Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. PMID:24068705
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. PMID:24037214
A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments. PMID:23965047
Pathprinting: An integrative approach to understand the functional basis of disease. PMID:23890051
LifeMap Discovery™: the embryonic development, stem cells, and regenerative medicine research portal. PMID:23874394
RAP1 protects from obesity through its extratelomeric role regulating gene expression. PMID:23791526
Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open Problems. PMID:23762209
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking. PMID:23758851
Modelling gene expression profiles related to prostate tumor progression using binary states. PMID:23721350
Poor-prognosis colon cancer is defined by a molecularly distinct subtype and develops from serrated precursor lesions. PMID:23584090
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. PMID:23457041
Reuse of public genome-wide gene expression data. PMID:23269463
Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. PMID:23234303
CellLineNavigator: a workbench for cancer cell line analysis. PMID:23118487
Gene expression anti-profiles as a basis for accurate universal cancer signatures. PMID:23088656
Mice that express human interleukin-8 have increased mobilization of immature myeloid cells, which exacerbates inflammation and accelerates colon carcinogenesis. PMID:23041326
A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data. PMID:23001152
Brain and testicular tumors in mice with progenitor cells lacking BAX and BAK. PMID:22986529
CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data. PMID:22953731
The role of master regulators in the metabolic/transcriptional coupling in breast carcinomas. PMID:22952604
Direct integration of intensity-level data from Affymetrix and Illumina microarrays improves statistical power for robust reanalysis. PMID:22909195
Gene Expression Commons: an open platform for absolute gene expression profiling. PMID:22815738
The human carotid body transcriptome with focus on oxygen sensing and inflammation--a comparative analysis. PMID:22615433
Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients. PMID:22545094
Comparative modular analysis of gene expression in vertebrate organs. PMID:22458817
Single sample expression-anchored mechanisms predict survival in head and neck cancer. PMID:22291585
SpeCond: a method to detect condition-specific gene expression. PMID:22008066
Strategy to find molecular signatures in a small series of rare cancers: validation for radiation-induced breast and thyroid tumors. PMID:21853153
When orthologs diverge between human and mouse. PMID:21677033
Assessing affymetrix GeneChip microarray quality. PMID:21548974
http://dx.doi.org/10.1093/nar/gkt1204

Tags:

Tags
More detailed information about this field from each metasource.

microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

human biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:00.038313

microarray data and other gene expression gene expression microarray experiment pathology human gene transcripts

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