Protein Structure Change Database
Names
More detailed information about this field from each metasource.
Protein Structure Change Database
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
PSCDB
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Protein Structure Change Database
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
PSCDB
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Protein Structure Change Database
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
PSCDB
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
The Protein Structural Change DataBase (PSCDB) presents the structural changes found in proteins, represented by pairs of ligand-free and ligand-bound structures of identical proteins, and links these changes to ligand-binding.
Description
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The Protein Structural Change DataBase (PSCDB) presents the structural changes found in proteins, represented by pairs of ligand-free and ligand-bound structures of identical proteins, and links these changes to ligand-binding.
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Protein Structural Change upon ligand binding
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/Webpage
More detailed information about this field from each metasource.
http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
Classification and annotation of the relationship between protein structural change and ligand binding
PMID: 21376729
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
PSCDB: a database for protein structural change upon ligand binding
PMID: 22080505
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/GKR966
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Classification and annotation of the relationship between protein structural change and ligand binding
PMID: 21376729
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
PSCDB: a database for protein structural change upon ligand binding
PMID: 22080505
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/GKR966
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Classification and annotation of the relationship between protein structural change and ligand binding
PubMed citations: 24.
24 articles citing: Classification and annotation of the relationship between protein structural change and ligand binding
An update of label-free protein target identification methods for natural active products. PMID:35198076
GSK-3β, FYN, and DYRK1A: Master Regulators in Neurodegenerative Pathways. PMID:34445804
Physical Chemistry of the Protein Backbone: Enabling the Mechanisms of Intrinsic Protein Disorder. PMID:32349480
Domain sliding of two Staphylococcus aureus N-acetylglucosaminidases enables their substrate-binding prior to its catalysis. PMID:32313083
Molecular dynamics simulations and linear response theories jointly describe biphasic responses of myoglobin relaxation and reveal evolutionarily conserved frequent communicators. PMID:31984199
Allosteric response to ligand binding: Molecular dynamics study of the N-terminal domains in IP 3 receptor. PMID:31984176
Large-Scale Conformational Changes and Protein Function: Breaking the in silico Barrier. PMID:31750315
Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures. PMID:30699115
Inhibition of tumor-microenvironment interaction and tumor invasion by small-molecule allosteric inhibitor of DDR2 extracellular domain. PMID:30061414
Thermodynamics of Conformational Transitions in a Disordered Protein Backbone Model. PMID:29925017
On the folding of a structurally complex protein to its metastable active state. PMID:29343647
Interactive comparison and remediation of collections of macromolecular structures. PMID:28901593
Elastic network model of learned maintained contacts to predict protein motion. PMID:28854238
Changes in hydration structure are necessary for collective motions of a multi-domain protein. PMID:27193111
In the multi-domain protein adenylate kinase, domain insertion facilitates cooperative folding while accommodating function at domain interfaces. PMID:25393408
Ligand-induced protein responses and mechanical signal propagation described by linear response theories. PMID:25229149
Global analysis of protein structural changes in complex proteomes. PMID:25218519
Quantitative method for the assignment of hinge and shear mechanism in protein domain movements. PMID:25078396
Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function. PMID:24502763
The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation. PMID:24313858
Classification of domain movements in proteins using dynamic contact graphs. PMID:24260562
Protein conformational switches: from nature to design. PMID:22688954
Composite structural motifs of binding sites for delineating biological functions of proteins. PMID:22347478
PSCDB: a database for protein structural change upon ligand binding. PMID:22080505 -
PSCDB: a database for protein structural change upon ligand binding
PubMed citations: 18.
18 articles citing: PSCDB: a database for protein structural change upon ligand binding
D3PM: a comprehensive database for protein motions ranging from residue to domain. PMID:35164668
"Protein" no longer means what it used to. PMID:34308370
Structure dictates the mechanism of ligand recognition in the histidine and maltose binding proteins. PMID:34235478
An intrinsic FRET sensor of protein-ligand interactions. PMID:32427252
ART-RRT: As-Rigid-As-Possible search for protein conformational transition paths. PMID:31435895
Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures. PMID:30699115
Normal mode analysis as a method to derive protein dynamics information from the Protein Data Bank. PMID:29103094
Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms. PMID:27513851
CCProf: exploring conformational change profile of proteins. PMID:27016699
The value of protein structure classification information-Surveying the scientific literature. PMID:26313554
ChSeq: A database of chameleon sequences. PMID:25970262
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability. PMID:25883149
Principles of allosteric interactions in cell signaling. PMID:25474128
sc-PDB: a 3D-database of ligandable binding sites--10 years on. PMID:25300483
Ligand-induced protein responses and mechanical signal propagation described by linear response theories. PMID:25229149
A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations. PMID:24762569
Classification of domain movements in proteins using dynamic contact graphs. PMID:24260562
Are predicted protein structures of any value for binding site prediction and virtual ligand screening? PMID:23415854 - http://dx.doi.org/10.1093/nar/GKR966
Tags:
Tags
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enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
enzyme commission number
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ligand
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
enzyme
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
enzyme commission number
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ligand
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PSCDB; Protein Structure Change Database; DOI: https://doi.org/10.25504/FAIRsharing.3d4jx0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
enzyme enzyme commission number ligand protein structure structure
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